Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.52372 * 2 1 4 4 C 1.39124 * 119.99867 * 56.33035 * 3 2 1 5 5 C 1.39171 * 119.62775 * 185.77237 * 4 3 2 6 6 C 1.38210 * 119.16942 * 179.78933 * 5 4 3 7 7 C 1.39460 * 118.44630 * 0.47937 * 6 5 4 8 8 O 1.35807 * 120.40415 * 179.77800 * 7 6 5 9 9 C 1.34810 * 117.00093 * 5.31900 * 8 7 6 10 10 H 1.07998 * 120.00172 * 354.89803 * 9 8 7 11 11 C 1.38637 * 120.00291 * 174.90067 * 9 8 7 12 12 N 1.31572 * 119.99844 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99773 * 359.72575 * 11 9 8 14 14 H 1.48500 * 109.47212 * 270.27614 * 13 11 9 15 15 H 1.48505 * 109.47062 * 30.27259 * 13 11 9 16 16 H 1.48497 * 109.46881 * 150.27255 * 13 11 9 17 17 C 1.38670 * 119.19211 * 359.50616 * 7 6 5 18 18 N 1.31933 * 120.75583 * 0.26900 * 17 7 6 19 19 C 1.53117 * 109.52581 * 120.12991 * 2 1 3 20 20 C 1.53163 * 109.20724 * 177.55983 * 19 2 1 21 21 N 1.46852 * 109.55695 * 300.85700 * 20 19 2 22 22 C 1.46844 * 111.19576 * 61.74679 * 21 20 19 23 23 C 1.53041 * 109.52413 * 298.25465 * 22 21 20 24 24 H 1.08997 * 109.47539 * 64.64995 * 1 2 3 25 25 H 1.08997 * 109.47068 * 184.65893 * 1 2 3 26 26 H 1.09009 * 109.46504 * 304.65487 * 1 2 3 27 27 H 0.97001 * 119.99890 * 236.33226 * 3 2 1 28 28 H 1.08001 * 120.41765 * 0.05174 * 5 4 3 29 29 H 1.07993 * 120.78229 * 180.25692 * 6 5 4 30 30 H 0.97007 * 119.99785 * 179.72584 * 12 11 9 31 31 H 1.07995 * 119.62039 * 180.25370 * 17 7 6 32 32 H 1.08996 * 109.50380 * 297.56026 * 19 2 1 33 33 H 1.09000 * 109.50043 * 57.68076 * 19 2 1 34 34 H 1.09005 * 109.44707 * 180.83494 * 20 19 2 35 35 H 1.09002 * 109.44407 * 60.88325 * 20 19 2 36 36 H 1.00906 * 111.00073 * 185.83953 * 21 20 19 37 37 H 1.09003 * 109.46270 * 178.24064 * 22 21 20 38 38 H 1.08999 * 109.45703 * 58.26798 * 22 21 20 39 39 H 1.09001 * 109.50538 * 299.24332 * 23 22 21 40 40 H 1.08990 * 109.53727 * 179.13814 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6225 2.2596 1.0027 5 6 1.9935 3.5990 0.9303 6 6 1.5901 4.4646 1.9294 7 6 0.8307 3.9558 2.9826 8 8 0.4170 4.7701 3.9877 9 6 0.6785 6.0860 3.8563 10 1 1.2668 6.4390 3.0223 11 6 0.1924 6.9862 4.7919 12 7 0.4481 8.2705 4.6639 13 14 -0.8315 6.3766 6.2304 14 1 -2.2667 6.3701 5.8490 15 1 -0.4088 4.9992 6.5903 16 1 -0.6329 7.2756 7.3955 17 6 0.4984 2.6096 2.9882 18 7 0.8965 1.8123 2.0153 19 6 2.0418 -0.7244 1.2481 20 6 3.5721 -0.7736 1.2102 21 7 4.0115 -1.4767 -0.0018 22 6 3.5708 -0.7731 -1.2130 23 6 2.0416 -0.7243 -1.2484 24 1 -0.3634 0.4400 -0.9287 25 1 -0.3633 -1.0242 0.0835 26 1 -0.3633 0.5844 0.8454 27 1 2.6206 1.6822 -0.6992 28 1 2.5856 3.9584 0.1017 29 1 1.8597 5.5099 1.8972 30 1 0.1046 8.9008 5.3163 31 1 -0.0929 2.2091 3.7983 32 1 1.7154 -0.1885 2.1394 33 1 1.6457 -1.7397 1.2677 34 1 3.9402 -1.3017 2.0899 35 1 3.9678 0.2421 1.2045 36 1 5.0123 -1.6056 -0.0025 37 1 3.9377 -1.3008 -2.0934 38 1 3.9665 0.2425 -1.2072 39 1 1.6454 -1.7396 -1.2680 40 1 1.7145 -0.1888 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168186567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = 22.409459 kcal Electronic energy + Delta-G solvation = -21808.023463 eV Core-core repulsion = 18623.669619 eV Total energy + Delta-G solvation = -3184.353843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17026 -38.99048 -37.19924 -34.69034 -32.41129 -31.88214 -31.19855 -30.71208 -27.94135 -27.30353 -25.08048 -23.30003 -22.81772 -22.05290 -21.40313 -19.17849 -17.81325 -17.32623 -17.03540 -16.58222 -15.46655 -14.81713 -14.67876 -14.43979 -14.21918 -14.02988 -13.95440 -13.54149 -13.03590 -12.87314 -12.66906 -12.46659 -12.34462 -12.25265 -11.87577 -11.79066 -11.48534 -11.38474 -11.15133 -10.94247 -10.52481 -10.34539 -10.18971 -9.60024 -9.36284 -9.02083 -8.72788 -8.64430 -8.50746 -6.75434 -6.40542 -4.05301 1.92832 2.30779 3.23089 3.26969 3.41330 3.62172 4.12863 4.24779 4.56180 4.69344 4.82030 4.88289 4.99401 5.10164 5.20859 5.20952 5.30038 5.41754 5.54855 5.65822 5.69551 5.74172 5.81866 5.87575 5.93579 5.96782 6.00248 6.18633 6.21879 6.39906 6.50392 6.59091 6.71074 6.95264 7.04060 7.13949 7.23316 7.59474 7.76665 7.92829 8.03318 8.84247 8.95129 9.57132 10.67560 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037050 B = 0.003898 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.558154 B = 7180.881135 C = 7334.330362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.197 3.803 3 N -0.731 5.731 4 C 0.324 3.676 5 C -0.187 4.187 6 C -0.139 4.139 7 C 0.068 3.932 8 O -0.218 6.218 9 C -0.388 4.388 10 H 0.102 0.898 11 C 0.062 3.938 12 N -0.883 5.883 13 Si 0.906 3.094 14 H -0.274 1.274 15 H -0.259 1.259 16 H -0.283 1.283 17 C 0.064 3.936 18 N -0.492 5.492 19 C -0.126 4.126 20 C 0.061 3.939 21 N -0.691 5.691 22 C 0.059 3.941 23 C -0.119 4.119 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.395 0.605 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.279 0.721 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.338 0.662 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.081 0.919 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -16.286 -10.151 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.110 3.890 3 N -0.371 5.371 4 C 0.092 3.908 5 C -0.211 4.211 6 C -0.166 4.166 7 C 0.014 3.986 8 O -0.123 6.123 9 C -0.464 4.464 10 H 0.119 0.881 11 C -0.141 4.141 12 N -0.522 5.522 13 Si 0.732 3.268 14 H -0.199 1.199 15 H -0.183 1.183 16 H -0.209 1.209 17 C -0.094 4.094 18 N -0.209 5.209 19 C -0.165 4.165 20 C -0.068 4.068 21 N -0.322 5.322 22 C -0.071 4.071 23 C -0.157 4.157 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.230 0.770 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.526 -17.536 -9.744 20.368 hybrid contribution 0.802 1.926 0.153 2.092 sum 4.328 -15.609 -9.591 18.825 Atomic orbital electron populations 1.22227 0.94972 1.01705 1.03137 1.19968 0.93549 0.81297 0.94203 1.44286 1.54700 1.09461 1.28624 1.17946 0.96120 0.87318 0.89463 1.21081 1.06332 0.92408 1.01303 1.21492 0.99780 1.00971 0.94399 1.19980 0.96923 0.92038 0.89693 1.83580 1.71594 1.19024 1.38109 1.20682 1.34510 0.78020 1.13206 0.88065 1.24437 0.97067 0.94071 0.98480 1.69657 1.44773 1.00973 1.36754 0.86169 0.80347 0.79580 0.80736 1.19926 1.18292 1.20898 1.21518 1.02285 0.88001 0.97635 1.67051 1.14760 1.37026 1.02109 1.22076 0.93914 1.00269 1.00201 1.21901 0.96865 0.96278 0.91751 1.60345 1.18081 1.51597 1.02140 1.21876 0.95918 0.96336 0.92940 1.21883 0.95024 1.01435 0.97394 0.93581 0.92829 0.89432 0.76957 0.86662 0.84179 0.91127 0.83308 0.88500 0.91693 0.91475 0.94893 0.84530 0.91109 0.95328 0.90074 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.43 37.16 0.31 -1.77 16 2 C 0.20 2.38 0.66 -131.69 -0.09 2.29 16 3 N -0.73 -9.69 4.33 -47.58 -0.21 -9.90 16 4 C 0.32 5.42 6.88 -154.91 -1.07 4.36 16 5 C -0.19 -3.28 9.93 -39.25 -0.39 -3.67 16 6 C -0.14 -2.90 9.26 -39.14 -0.36 -3.26 16 7 C 0.07 1.52 6.67 -38.97 -0.26 1.26 16 8 O -0.22 -5.62 8.59 -0.07 0.00 -5.62 16 9 C -0.39 -10.77 9.96 30.88 0.31 -10.46 16 10 H 0.10 2.86 5.49 -52.49 -0.29 2.57 16 11 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 12 N -0.88 -25.38 13.96 55.48 0.77 -24.61 16 13 Si 0.91 21.50 28.62 -169.99 -4.86 16.64 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.06 1.25 11.14 -17.35 -0.19 1.06 16 18 N -0.49 -8.77 5.50 -12.25 -0.07 -8.84 16 19 C -0.13 -1.60 4.78 -26.59 -0.13 -1.73 16 20 C 0.06 0.72 6.41 -3.77 -0.02 0.69 16 21 N -0.69 -6.89 6.85 -113.74 -0.78 -7.67 16 22 C 0.06 0.54 6.39 -3.83 -0.02 0.51 16 23 C -0.12 -1.17 4.94 -26.64 -0.13 -1.30 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.35 5.78 -51.92 -0.30 1.05 16 27 H 0.40 4.58 7.36 -40.82 -0.30 4.28 16 28 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.14 3.03 5.75 -52.49 -0.30 2.73 16 30 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.15 2.67 8.06 -52.49 -0.42 2.25 16 32 H 0.10 1.46 6.01 -51.93 -0.31 1.15 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.44 7.69 -51.93 -0.40 0.04 16 36 H 0.34 2.83 8.90 -39.29 -0.35 2.48 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.27 6.94 -51.93 -0.36 -0.09 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -28.81 315.43 -8.08 -36.89 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.55 Total: 8.73 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.14 Total: -10.39 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.28 Total: -51.01 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: 0.00 Total: -5.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.81 -8.08 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168186567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.302 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds