Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.52372 * 2 1 4 4 C 1.39124 * 119.99867 * 56.33035 * 3 2 1 5 5 C 1.39171 * 119.62775 * 185.77237 * 4 3 2 6 6 C 1.38210 * 119.16942 * 179.78933 * 5 4 3 7 7 C 1.39460 * 118.44630 * 0.47937 * 6 5 4 8 8 O 1.35807 * 120.40415 * 179.77800 * 7 6 5 9 9 C 1.34810 * 117.00093 * 5.31900 * 8 7 6 10 10 H 1.07998 * 120.00172 * 354.89803 * 9 8 7 11 11 C 1.38637 * 120.00291 * 174.90067 * 9 8 7 12 12 N 1.31572 * 119.99844 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99773 * 359.72575 * 11 9 8 14 14 H 1.48500 * 109.47212 * 270.27614 * 13 11 9 15 15 H 1.48505 * 109.47062 * 30.27259 * 13 11 9 16 16 H 1.48497 * 109.46881 * 150.27255 * 13 11 9 17 17 C 1.38670 * 119.19211 * 359.50616 * 7 6 5 18 18 N 1.31933 * 120.75583 * 0.26900 * 17 7 6 19 19 C 1.53117 * 109.52581 * 120.12991 * 2 1 3 20 20 C 1.53163 * 109.20724 * 177.55983 * 19 2 1 21 21 N 1.46852 * 109.55695 * 300.85700 * 20 19 2 22 22 C 1.46844 * 111.19576 * 61.74679 * 21 20 19 23 23 C 1.53041 * 109.52413 * 298.25465 * 22 21 20 24 24 H 1.08997 * 109.47539 * 64.64995 * 1 2 3 25 25 H 1.08997 * 109.47068 * 184.65893 * 1 2 3 26 26 H 1.09009 * 109.46504 * 304.65487 * 1 2 3 27 27 H 0.97001 * 119.99890 * 236.33226 * 3 2 1 28 28 H 1.08001 * 120.41765 * 0.05174 * 5 4 3 29 29 H 1.07993 * 120.78229 * 180.25692 * 6 5 4 30 30 H 0.97007 * 119.99785 * 179.72584 * 12 11 9 31 31 H 1.07995 * 119.62039 * 180.25370 * 17 7 6 32 32 H 1.08996 * 109.50380 * 297.56026 * 19 2 1 33 33 H 1.09000 * 109.50043 * 57.68076 * 19 2 1 34 34 H 1.09005 * 109.44707 * 180.83494 * 20 19 2 35 35 H 1.09002 * 109.44407 * 60.88325 * 20 19 2 36 36 H 1.00906 * 111.00073 * 185.83953 * 21 20 19 37 37 H 1.09003 * 109.46270 * 178.24064 * 22 21 20 38 38 H 1.08999 * 109.45703 * 58.26798 * 22 21 20 39 39 H 1.09001 * 109.50538 * 299.24332 * 23 22 21 40 40 H 1.08990 * 109.53727 * 179.13814 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6225 2.2596 1.0027 5 6 1.9935 3.5990 0.9303 6 6 1.5901 4.4646 1.9294 7 6 0.8307 3.9558 2.9826 8 8 0.4170 4.7701 3.9877 9 6 0.6785 6.0860 3.8563 10 1 1.2668 6.4390 3.0223 11 6 0.1924 6.9862 4.7919 12 7 0.4481 8.2705 4.6639 13 14 -0.8315 6.3766 6.2304 14 1 -2.2667 6.3701 5.8490 15 1 -0.4088 4.9992 6.5903 16 1 -0.6329 7.2756 7.3955 17 6 0.4984 2.6096 2.9882 18 7 0.8965 1.8123 2.0153 19 6 2.0418 -0.7244 1.2481 20 6 3.5721 -0.7736 1.2102 21 7 4.0115 -1.4767 -0.0018 22 6 3.5708 -0.7731 -1.2130 23 6 2.0416 -0.7243 -1.2484 24 1 -0.3634 0.4400 -0.9287 25 1 -0.3633 -1.0242 0.0835 26 1 -0.3633 0.5844 0.8454 27 1 2.6206 1.6822 -0.6992 28 1 2.5856 3.9584 0.1017 29 1 1.8597 5.5099 1.8972 30 1 0.1046 8.9008 5.3163 31 1 -0.0929 2.2091 3.7983 32 1 1.7154 -0.1885 2.1394 33 1 1.6457 -1.7397 1.2677 34 1 3.9402 -1.3017 2.0899 35 1 3.9678 0.2421 1.2045 36 1 5.0123 -1.6056 -0.0025 37 1 3.9377 -1.3008 -2.0934 38 1 3.9665 0.2425 -1.2072 39 1 1.6454 -1.7396 -1.2680 40 1 1.7145 -0.1888 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168186567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = 3.495997 kcal Electronic energy + Delta-G solvation = -21808.843612 eV Core-core repulsion = 18623.669619 eV Total energy + Delta-G solvation = -3185.173993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55207 -40.29258 -38.77931 -35.79018 -34.40174 -33.28587 -32.51331 -31.69177 -29.47605 -28.27313 -26.95964 -24.67158 -23.91109 -23.31666 -22.62347 -20.46387 -19.54670 -18.97869 -18.47441 -17.50460 -16.94448 -16.20374 -16.05559 -15.84286 -15.52265 -15.25133 -15.18648 -14.70531 -14.53124 -14.40099 -14.38109 -13.98999 -13.62883 -13.52284 -13.14609 -12.83156 -12.75347 -12.58416 -12.47600 -12.09938 -12.05846 -11.63267 -11.57301 -11.18266 -10.97617 -10.59036 -10.33485 -10.17401 -9.36503 -8.46379 -8.25155 -6.15002 0.36762 0.71106 1.34952 1.38793 1.55472 2.31548 2.39214 2.84294 3.11784 3.21071 3.35286 3.73521 3.81325 3.95108 4.08245 4.11680 4.23916 4.32800 4.36249 4.48750 4.59455 4.63287 4.81108 4.86115 4.90494 4.94960 5.01600 5.02086 5.13068 5.22659 5.30110 5.40917 5.44221 5.49943 5.58034 5.68433 6.02760 6.10512 6.44144 6.51603 6.63741 6.88664 7.39699 7.65113 8.65478 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037050 B = 0.003898 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.558154 B = 7180.881135 C = 7334.330362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.193 3.807 3 N -0.714 5.714 4 C 0.344 3.656 5 C -0.187 4.187 6 C -0.144 4.144 7 C 0.026 3.974 8 O -0.243 6.243 9 C -0.395 4.395 10 H 0.079 0.921 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.969 3.031 14 H -0.267 1.267 15 H -0.260 1.260 16 H -0.271 1.271 17 C 0.076 3.924 18 N -0.490 5.490 19 C -0.124 4.124 20 C 0.067 3.933 21 N -0.690 5.690 22 C 0.057 3.943 23 C -0.113 4.113 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.408 0.592 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.283 0.717 31 H 0.164 0.836 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.016 0.984 36 H 0.349 0.651 37 H 0.092 0.908 38 H 0.029 0.971 39 H 0.087 0.913 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -19.096 -11.793 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.106 3.894 3 N -0.353 5.353 4 C 0.109 3.891 5 C -0.211 4.211 6 C -0.171 4.171 7 C -0.026 4.026 8 O -0.150 6.150 9 C -0.471 4.471 10 H 0.097 0.903 11 C -0.189 4.189 12 N -0.568 5.568 13 Si 0.792 3.208 14 H -0.192 1.192 15 H -0.184 1.184 16 H -0.196 1.196 17 C -0.082 4.082 18 N -0.208 5.208 19 C -0.163 4.163 20 C -0.063 4.063 21 N -0.322 5.322 22 C -0.072 4.072 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.245 0.755 28 H 0.165 0.835 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.167 0.833 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.898 -20.404 -11.447 23.718 hybrid contribution 0.817 2.504 0.367 2.659 sum 4.715 -17.900 -11.080 21.573 Atomic orbital electron populations 1.22191 0.95316 1.02283 1.02093 1.20147 0.93286 0.80419 0.95513 1.44415 1.53824 1.09606 1.27474 1.18255 0.93935 0.87643 0.89298 1.21324 1.06256 0.92307 1.01259 1.21517 0.99772 1.00762 0.95083 1.20389 0.98996 0.92817 0.90402 1.83520 1.73568 1.17998 1.39893 1.20652 1.34286 0.79433 1.12758 0.90330 1.25228 0.98389 0.94178 1.01117 1.69741 1.46781 1.02049 1.38274 0.85225 0.78832 0.78938 0.77815 1.19222 1.18431 1.19568 1.21782 1.01353 0.86925 0.98120 1.67262 1.15183 1.36183 1.02129 1.22009 0.94748 1.00285 0.99305 1.21774 0.96005 0.95580 0.92932 1.60325 1.19053 1.51163 1.01705 1.21959 0.95382 0.96647 0.93228 1.21853 0.95489 1.01471 0.96264 0.93163 0.91284 0.92100 0.75462 0.83507 0.85942 0.90740 0.81912 0.91006 0.91069 0.91310 0.96583 0.83301 0.88988 0.95328 0.89440 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.43 71.98 0.61 -3.10 16 2 C 0.19 4.08 0.66 3.69 0.00 4.08 16 3 N -0.71 -16.82 4.33 -304.44 -1.32 -18.13 16 4 C 0.34 10.86 6.88 133.04 0.92 11.77 16 5 C -0.19 -6.32 9.93 22.49 0.22 -6.09 16 6 C -0.14 -6.13 9.26 22.56 0.21 -5.92 16 7 C 0.03 1.18 6.67 22.67 0.15 1.33 16 8 O -0.24 -12.92 8.59 -23.17 -0.20 -13.12 16 9 C -0.39 -22.92 9.96 67.92 0.68 -22.24 16 10 H 0.08 4.75 5.49 -2.91 -0.02 4.74 16 11 C 0.01 0.50 5.49 84.83 0.47 0.97 16 12 N -0.93 -55.22 13.96 21.61 0.30 -54.92 16 13 Si 0.97 45.25 28.62 68.60 1.96 47.22 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 C 0.08 2.95 11.14 84.78 0.94 3.90 16 18 N -0.49 -16.90 5.50 -192.67 -1.06 -17.96 16 19 C -0.12 -2.89 4.78 30.69 0.15 -2.74 16 20 C 0.07 1.40 6.41 86.37 0.55 1.96 16 21 N -0.69 -11.46 6.85 -513.76 -3.52 -14.98 16 22 C 0.06 0.81 6.39 86.33 0.55 1.36 16 23 C -0.11 -1.74 4.94 30.65 0.15 -1.59 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.76 5.78 -2.38 -0.01 1.75 16 27 H 0.41 7.90 7.36 -92.71 -0.68 7.22 16 28 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.12 5.61 5.75 -2.91 -0.02 5.60 16 30 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 31 H 0.16 5.79 8.06 -2.91 -0.02 5.76 16 32 H 0.07 2.06 6.01 -2.39 -0.01 2.04 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.02 0.39 7.69 -2.39 -0.02 0.37 16 36 H 0.35 4.70 8.90 -89.69 -0.80 3.90 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.03 0.42 6.94 -2.39 -0.02 0.40 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.21 315.43 1.36 -62.85 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.41 Total: 25.37 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 5.60 Total: -16.32 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -5.59 Total: -105.99 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.20 Total: -13.12 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.96 Total: 47.22 kcal Total: -64.21 1.36 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168186567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.350 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds