Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38368 * 119.39214 * 2 1 4 4 C 1.38333 * 119.50794 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.81478 * 180.02562 * 4 3 2 6 6 C 1.39978 * 118.36705 * 359.75621 * 4 3 2 7 7 C 1.47423 * 120.60571 * 180.26050 * 6 4 3 8 8 N 1.34775 * 119.99950 * 90.23270 * 7 6 4 9 9 O 1.21602 * 120.00380 * 270.22625 * 7 6 4 10 10 C 1.40515 * 118.78110 * 0.48775 * 6 4 3 11 11 N 1.38270 * 119.82369 * 179.77930 * 10 6 4 12 12 C 1.46498 * 119.99719 * 180.02562 * 11 10 6 13 13 C 1.52996 * 109.47059 * 179.72299 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47037 * 60.00067 * 19 17 15 21 21 H 1.48495 * 109.46817 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46854 * 299.99817 * 19 17 15 23 23 N 1.31850 * 119.38655 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47302 * 270.02061 * 1 2 3 25 25 H 1.08997 * 109.47309 * 30.02347 * 1 2 3 26 26 H 1.09000 * 109.47126 * 150.02001 * 1 2 3 27 27 H 1.07998 * 120.24801 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.46789 * 90.00662 * 5 4 3 29 29 H 1.09000 * 109.46942 * 210.00677 * 5 4 3 30 30 H 1.09002 * 109.47139 * 330.00244 * 5 4 3 31 31 H 0.96998 * 120.00116 * 359.97438 * 8 7 6 32 32 H 0.97002 * 120.00429 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99835 * 359.71585 * 11 10 6 34 34 H 1.09004 * 109.46963 * 299.72095 * 12 11 10 35 35 H 1.08994 * 109.47567 * 59.72247 * 12 11 10 36 36 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 37 37 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 38 38 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 39 39 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 40 40 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2056 0.0000 4 6 3.5694 1.2084 0.0005 5 6 4.3388 2.5042 0.0011 6 6 4.2369 -0.0220 0.0063 7 6 5.7102 -0.0766 0.0129 8 7 6.3782 -0.1036 1.1831 9 8 6.3226 -0.0973 -1.0374 10 6 3.4771 -1.2040 0.0008 11 7 4.1143 -2.4311 0.0017 12 6 3.3259 -3.6658 -0.0046 13 6 4.2672 -4.8719 -0.0091 14 6 3.4438 -6.1615 -0.0150 15 6 4.3710 -7.3495 -0.0200 16 1 5.4406 -7.1997 -0.0187 17 6 3.8538 -8.6275 -0.0253 18 7 2.5514 -8.8099 -0.0264 19 14 5.0031 -10.1002 -0.0309 20 1 5.8591 -10.0646 1.1820 21 1 4.2039 -11.3517 -0.0355 22 1 5.8599 -10.0549 -1.2430 23 7 2.1540 -1.1488 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6402 2.1375 0.0004 28 1 4.5240 2.8163 1.0289 29 1 5.2897 2.3624 -0.5125 30 1 3.7592 3.2712 -0.5127 31 1 5.8898 -0.0867 2.0210 32 1 7.3476 -0.1398 1.1875 33 1 5.0834 -2.4743 0.0020 34 1 2.6964 -3.6994 0.8847 35 1 2.6981 -3.6915 -0.8952 36 1 4.8966 -4.8382 -0.8984 37 1 4.8950 -4.8462 0.8816 38 1 2.8147 -6.1949 0.8744 39 1 2.8158 -6.1874 -0.9055 40 1 2.1875 -9.7091 -0.0297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = -29.261817 kcal Electronic energy + Delta-G solvation = -20872.789492 eV Core-core repulsion = 17686.195014 eV Total energy + Delta-G solvation = -3186.594478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81909 -38.88728 -36.57592 -34.25678 -33.89856 -33.49631 -32.09090 -30.33259 -28.51999 -27.53387 -26.33898 -23.38164 -22.88887 -21.41952 -20.66442 -20.08843 -17.99933 -17.16333 -16.96536 -16.78192 -16.22302 -15.13545 -14.89731 -14.51535 -14.34768 -14.28733 -14.20977 -13.73240 -13.49485 -13.00373 -12.79039 -12.71883 -12.44010 -12.27744 -11.93162 -11.73136 -11.70951 -10.90111 -10.71821 -10.59801 -10.41737 -10.10332 -9.88977 -9.67864 -9.54461 -9.43942 -9.28970 -9.12961 -8.36353 -7.63438 -6.01278 -4.04215 0.99597 1.43132 2.40131 3.26295 3.32815 3.37201 3.39534 3.41750 3.75881 4.33415 4.45349 4.49323 4.79679 4.91628 5.09044 5.25478 5.26353 5.34428 5.37602 5.50622 5.53047 5.67026 5.71779 5.80899 5.86651 5.96394 6.18223 6.19106 6.45361 6.55548 6.62168 6.73682 6.96763 7.10649 7.26493 7.44760 7.63700 7.76778 7.97468 8.06226 8.26779 8.39115 9.02021 9.59847 11.09970 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.003575 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.399476 B = 7831.332004 C = 8926.409026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.202 3.798 3 C -0.249 4.249 4 C 0.038 3.962 5 C -0.122 4.122 6 C -0.278 4.278 7 C 0.581 3.419 8 N -0.848 5.848 9 O -0.535 6.535 10 C 0.450 3.550 11 N -0.709 5.709 12 C 0.127 3.873 13 C -0.124 4.124 14 C 0.027 3.973 15 C -0.523 4.523 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.539 5.539 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.403 0.597 32 H 0.402 0.598 33 H 0.405 0.595 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 23.681 4.238 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.061 3.939 3 C -0.273 4.273 4 C 0.030 3.970 5 C -0.178 4.178 6 C -0.289 4.289 7 C 0.365 3.635 8 N -0.412 5.412 9 O -0.411 6.411 10 C 0.211 3.789 11 N -0.337 5.337 12 C 0.005 3.995 13 C -0.162 4.162 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.259 5.259 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.232 0.768 32 H 0.233 0.767 33 H 0.241 0.759 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.115 22.523 3.456 22.787 hybrid contribution 1.602 -0.213 0.430 1.672 sum 1.487 22.310 3.886 22.695 Atomic orbital electron populations 1.20784 0.88747 1.03665 1.03270 1.21118 0.96599 0.87367 0.88824 1.21326 0.93391 0.99000 1.13536 1.19914 0.93603 0.93245 0.90261 1.20893 1.00263 0.93821 1.02865 1.19760 0.93122 0.93799 1.22233 1.17999 0.87123 0.74675 0.83690 1.43942 1.11100 1.77532 1.08608 1.90860 1.69735 1.48848 1.31642 1.18165 0.88097 0.85078 0.87585 1.44905 1.08789 1.03025 1.76948 1.21637 0.94365 0.81529 1.02000 1.21917 0.98445 0.94992 1.00811 1.18998 0.95033 0.89424 0.97620 1.21176 0.92993 0.90970 1.51009 0.92743 1.25018 0.95044 0.99070 0.95248 1.69952 1.10862 1.21965 1.50544 0.86644 0.80752 0.81906 0.78619 1.20257 1.21244 1.20217 1.67163 1.06845 1.29414 1.22461 0.90077 0.90571 0.90105 0.84935 0.90277 0.91051 0.90446 0.76827 0.76685 0.75870 0.91676 0.91734 0.92809 0.92908 0.96265 0.96246 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.16 36.00 0.37 -0.61 16 2 C 0.20 2.51 6.78 -82.54 -0.56 1.95 16 3 C -0.25 -2.67 9.41 -39.50 -0.37 -3.04 16 4 C 0.04 0.43 5.95 -103.93 -0.62 -0.19 16 5 C -0.12 -1.02 9.68 36.01 0.35 -0.67 16 6 C -0.28 -3.78 5.66 -104.65 -0.59 -4.37 16 7 C 0.58 7.62 4.89 -12.52 -0.06 7.56 16 8 N -0.85 -7.32 8.87 30.43 0.27 -7.05 16 9 O -0.54 -9.13 17.94 5.28 0.09 -9.03 16 10 C 0.45 7.01 7.49 -155.18 -1.16 5.85 16 11 N -0.71 -11.40 5.62 -60.23 -0.34 -11.74 16 12 C 0.13 2.31 5.68 -4.04 -0.02 2.29 16 13 C -0.12 -2.54 5.27 -26.73 -0.14 -2.68 16 14 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.54 -8.40 9.45 -8.44 -0.08 -8.48 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.69 7.20 -51.93 -0.37 0.32 16 30 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.40 2.65 8.81 -40.82 -0.36 2.29 16 32 H 0.40 2.84 8.93 -40.82 -0.36 2.48 16 33 H 0.41 6.21 7.30 -40.82 -0.30 5.91 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -34.21 342.33 -8.55 -42.76 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.00 Total: 4.85 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.36 Total: -6.98 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.59 Total: -53.48 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.21 -8.55 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.497 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds