Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38368 * 119.39214 * 2 1 4 4 C 1.38333 * 119.50794 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.81478 * 180.02562 * 4 3 2 6 6 C 1.39978 * 118.36705 * 359.75621 * 4 3 2 7 7 C 1.47423 * 120.60571 * 180.26050 * 6 4 3 8 8 N 1.34775 * 119.99950 * 90.23270 * 7 6 4 9 9 O 1.21602 * 120.00380 * 270.22625 * 7 6 4 10 10 C 1.40515 * 118.78110 * 0.48775 * 6 4 3 11 11 N 1.38270 * 119.82369 * 179.77930 * 10 6 4 12 12 C 1.46498 * 119.99719 * 180.02562 * 11 10 6 13 13 C 1.52996 * 109.47059 * 179.72299 * 12 11 10 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47037 * 60.00067 * 19 17 15 21 21 H 1.48495 * 109.46817 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46854 * 299.99817 * 19 17 15 23 23 N 1.31850 * 119.38655 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47302 * 270.02061 * 1 2 3 25 25 H 1.08997 * 109.47309 * 30.02347 * 1 2 3 26 26 H 1.09000 * 109.47126 * 150.02001 * 1 2 3 27 27 H 1.07998 * 120.24801 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.46789 * 90.00662 * 5 4 3 29 29 H 1.09000 * 109.46942 * 210.00677 * 5 4 3 30 30 H 1.09002 * 109.47139 * 330.00244 * 5 4 3 31 31 H 0.96998 * 120.00116 * 359.97438 * 8 7 6 32 32 H 0.97002 * 120.00429 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99835 * 359.71585 * 11 10 6 34 34 H 1.09004 * 109.46963 * 299.72095 * 12 11 10 35 35 H 1.08994 * 109.47567 * 59.72247 * 12 11 10 36 36 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 37 37 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 38 38 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 39 39 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 40 40 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2056 0.0000 4 6 3.5694 1.2084 0.0005 5 6 4.3388 2.5042 0.0011 6 6 4.2369 -0.0220 0.0063 7 6 5.7102 -0.0766 0.0129 8 7 6.3782 -0.1036 1.1831 9 8 6.3226 -0.0973 -1.0374 10 6 3.4771 -1.2040 0.0008 11 7 4.1143 -2.4311 0.0017 12 6 3.3259 -3.6658 -0.0046 13 6 4.2672 -4.8719 -0.0091 14 6 3.4438 -6.1615 -0.0150 15 6 4.3710 -7.3495 -0.0200 16 1 5.4406 -7.1997 -0.0187 17 6 3.8538 -8.6275 -0.0253 18 7 2.5514 -8.8099 -0.0264 19 14 5.0031 -10.1002 -0.0309 20 1 5.8591 -10.0646 1.1820 21 1 4.2039 -11.3517 -0.0355 22 1 5.8599 -10.0549 -1.2430 23 7 2.1540 -1.1488 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6402 2.1375 0.0004 28 1 4.5240 2.8163 1.0289 29 1 5.2897 2.3624 -0.5125 30 1 3.7592 3.2712 -0.5127 31 1 5.8898 -0.0867 2.0210 32 1 7.3476 -0.1398 1.1875 33 1 5.0834 -2.4743 0.0020 34 1 2.6964 -3.6994 0.8847 35 1 2.6981 -3.6915 -0.8952 36 1 4.8966 -4.8382 -0.8984 37 1 4.8950 -4.8462 0.8816 38 1 2.8147 -6.1949 0.8744 39 1 2.8158 -6.1874 -0.9055 40 1 2.1875 -9.7091 -0.0297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -54.007670 kcal Electronic energy + Delta-G solvation = -20873.862553 eV Core-core repulsion = 17686.195014 eV Total energy + Delta-G solvation = -3187.667539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82215 -39.91450 -37.90262 -35.70004 -35.19206 -34.43102 -33.76431 -31.70321 -29.54837 -28.37270 -28.00051 -25.04569 -24.02151 -22.46419 -22.27367 -21.22989 -18.93318 -18.59040 -18.05589 -17.90142 -17.86855 -16.52208 -16.50689 -15.84565 -15.57396 -15.49276 -15.26014 -14.69954 -14.29279 -14.16956 -14.04606 -13.94429 -13.67746 -13.48757 -13.14163 -13.12894 -12.72055 -12.69333 -12.57953 -12.40155 -11.77959 -11.56537 -11.44278 -11.23467 -10.96519 -10.78533 -10.57105 -10.45796 -10.32338 -8.75180 -8.21687 -6.33428 0.03876 0.46565 1.39334 1.39416 1.42540 1.50487 2.09650 2.40394 2.52351 2.77059 3.11506 3.40511 3.68894 3.91289 4.02826 4.14805 4.18102 4.23824 4.49509 4.51842 4.60016 4.68574 4.72913 4.84851 4.91899 4.94213 5.01531 5.07517 5.10397 5.24639 5.32662 5.45992 5.64930 5.66657 5.77949 5.80479 6.04062 6.20779 6.27604 6.30641 6.82443 7.17339 7.24346 7.35857 8.90121 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.003575 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.399476 B = 7831.332004 C = 8926.409026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.182 3.818 3 C -0.234 4.234 4 C 0.034 3.966 5 C -0.118 4.118 6 C -0.287 4.287 7 C 0.584 3.416 8 N -0.824 5.824 9 O -0.582 6.582 10 C 0.426 3.574 11 N -0.714 5.714 12 C 0.150 3.850 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.547 4.547 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.268 1.268 23 N -0.573 5.573 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.064 0.936 27 H 0.171 0.829 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.416 0.584 32 H 0.413 0.587 33 H 0.407 0.593 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.063 0.937 38 H -0.002 1.002 39 H -0.008 1.008 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 25.601 5.063 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.043 3.957 3 C -0.257 4.257 4 C 0.026 3.974 5 C -0.174 4.174 6 C -0.298 4.298 7 C 0.368 3.632 8 N -0.387 5.387 9 O -0.462 6.462 10 C 0.189 3.811 11 N -0.344 5.344 12 C 0.026 3.974 13 C -0.144 4.144 14 C -0.008 4.008 15 C -0.585 4.585 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.193 1.193 23 N -0.293 5.293 24 H 0.112 0.888 25 H 0.124 0.876 26 H 0.083 0.917 27 H 0.189 0.811 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.247 0.753 32 H 0.245 0.755 33 H 0.244 0.756 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.016 0.984 39 H 0.011 0.989 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.525 24.495 4.332 24.881 hybrid contribution 1.316 -0.675 0.208 1.493 sum 1.841 23.820 4.539 24.318 Atomic orbital electron populations 1.20877 0.86621 1.04352 1.04288 1.21760 0.98141 0.87276 0.88513 1.21744 0.93249 0.99789 1.10880 1.20381 0.94289 0.93679 0.89061 1.20957 0.99347 0.92621 1.04470 1.19909 0.93388 0.94035 1.22507 1.17988 0.87027 0.74230 0.83955 1.43723 1.11712 1.75336 1.07964 1.90837 1.70440 1.51512 1.33414 1.18344 0.88591 0.85158 0.89031 1.44594 1.08543 1.02623 1.78662 1.21131 0.93557 0.81921 1.00827 1.21627 0.98016 0.93500 1.01251 1.18874 0.94822 0.91810 0.95248 1.21631 0.93682 0.92126 1.51018 0.92077 1.25990 0.96738 1.02449 0.94602 1.70090 1.12898 1.22850 1.51345 0.85484 0.78560 0.77709 0.79194 1.18991 1.20744 1.19322 1.67149 1.07163 1.31509 1.23518 0.88776 0.87575 0.91699 0.81142 0.87874 0.92588 0.88216 0.75318 0.75468 0.75639 0.92379 0.93482 0.92790 0.91832 0.98393 0.98914 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 10.16 71.24 0.72 -0.99 16 2 C 0.18 4.29 6.78 42.59 0.29 4.58 16 3 C -0.23 -4.33 9.41 22.32 0.21 -4.12 16 4 C 0.03 0.70 5.95 -19.42 -0.12 0.58 16 5 C -0.12 -1.60 9.68 71.24 0.69 -0.91 16 6 C -0.29 -7.60 5.66 -19.88 -0.11 -7.71 16 7 C 0.58 14.96 4.89 86.66 0.42 15.38 16 8 N -0.82 -13.08 8.87 -175.89 -1.56 -14.64 16 9 O -0.58 -19.97 17.94 -4.04 -0.07 -20.05 16 10 C 0.43 13.39 7.49 133.64 1.00 14.39 16 11 N -0.71 -23.54 5.62 -344.48 -1.94 -25.48 16 12 C 0.15 5.66 5.68 86.38 0.49 6.15 16 13 C -0.11 -4.47 5.27 30.59 0.16 -4.31 16 14 C 0.03 1.62 4.97 29.85 0.15 1.77 16 15 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 0.01 5.46 84.65 0.46 0.48 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 19 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 N -0.57 -17.98 9.45 -180.61 -1.71 -19.68 16 24 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.11 1.07 8.07 -2.39 -0.02 1.06 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.98 7.20 -2.39 -0.02 0.96 16 30 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.42 4.70 8.81 -92.71 -0.82 3.89 16 32 H 0.41 5.21 8.93 -92.71 -0.83 4.39 16 33 H 0.41 12.70 7.30 -92.71 -0.68 12.03 16 34 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -76.36 342.33 0.39 -75.97 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -1.25 Total: 20.32 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.60 Total: -6.03 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.92 Total: -116.89 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.07 Total: -20.05 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.36 0.39 -75.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.963 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds