Wall clock time and date at job start Mon Mar 30 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21285 * 119.99569 * 2 1 4 4 N 1.34778 * 120.00332 * 180.02562 * 2 1 3 5 5 C 1.39630 * 119.99849 * 179.97438 * 4 2 1 6 6 N 1.32327 * 119.61881 * 359.97438 * 5 4 2 7 7 C 1.31897 * 121.71211 * 180.02562 * 6 5 4 8 8 C 1.38756 * 120.74090 * 0.02562 * 7 6 5 9 9 N 1.39945 * 120.41513 * 179.97438 * 8 7 6 10 10 C 1.46498 * 120.00203 * 359.72539 * 9 8 7 11 11 C 1.52991 * 109.47362 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47119 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46808 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00289 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00080 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99724 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00263 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46927 * 90.00056 * 17 15 13 19 19 H 1.48498 * 109.46827 * 210.00281 * 17 15 13 20 20 H 1.48498 * 109.47123 * 329.99982 * 17 15 13 21 21 C 1.39358 * 119.16589 * 0.22708 * 8 7 6 22 22 C 1.38351 * 118.42799 * 359.50915 * 21 8 7 23 23 C 1.50698 * 120.40816 * 180.24139 * 22 21 8 24 24 H 1.08992 * 109.47099 * 269.99213 * 1 2 3 25 25 H 1.09002 * 109.47182 * 30.00306 * 1 2 3 26 26 H 1.09010 * 109.46828 * 149.99637 * 1 2 3 27 27 H 0.96999 * 119.99471 * 359.97438 * 4 2 1 28 28 H 1.08004 * 119.62473 * 179.97438 * 7 6 5 29 29 H 0.97005 * 119.99849 * 179.97438 * 9 8 7 30 30 H 1.09009 * 109.46709 * 300.00146 * 10 9 8 31 31 H 1.09000 * 109.47335 * 59.99008 * 10 9 8 32 32 H 1.09009 * 109.47130 * 299.99647 * 11 10 9 33 33 H 1.08993 * 109.47402 * 59.99508 * 11 10 9 34 34 H 1.08993 * 109.47057 * 299.99537 * 12 11 10 35 35 H 1.09001 * 109.47095 * 59.99865 * 12 11 10 36 36 H 0.96993 * 120.00031 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.78515 * 179.75125 * 21 8 7 38 38 H 1.08992 * 109.47436 * 270.27595 * 23 22 21 39 39 H 1.09007 * 109.46892 * 30.27283 * 23 22 21 40 40 H 1.09001 * 109.47480 * 150.26839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5773 -1.1671 -0.0011 6 7 4.2312 -0.0166 -0.0016 7 6 5.5493 0.0317 -0.0026 8 6 6.3017 -1.1342 -0.0037 9 7 7.6999 -1.0750 -0.0053 10 6 8.3781 0.2235 -0.0119 11 6 9.8928 0.0078 -0.0131 12 6 10.6011 1.3640 -0.0206 13 6 12.0930 1.1515 -0.0211 14 1 12.4957 0.1495 -0.0169 15 6 12.9439 2.2364 -0.0279 16 7 12.4535 3.4567 -0.0336 17 14 14.7933 1.9730 -0.0292 18 1 15.2812 1.8960 -1.4297 19 1 15.4552 3.1072 0.6640 20 1 15.1134 0.7065 0.6769 21 6 5.6476 -2.3647 -0.0086 22 6 4.2641 -2.3752 -0.0017 23 6 3.5112 -3.6806 -0.0011 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6960 -2.0072 -0.0005 28 1 6.0484 0.9894 -0.0034 29 1 8.2200 -1.8938 -0.0057 30 1 8.0900 0.7794 -0.9043 31 1 8.0916 0.7876 0.8756 32 1 10.1813 -0.5482 0.8791 33 1 10.1789 -0.5560 -0.9009 34 1 10.3126 1.9196 -0.9129 35 1 10.3150 1.9283 0.8671 36 1 13.0520 4.2199 -0.0380 37 1 6.2074 -3.2883 -0.0136 38 1 3.3289 -3.9954 -1.0285 39 1 4.1012 -4.4400 0.5123 40 1 2.5592 -3.5508 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:02 Heat of formation + Delta-G solvation = -5.337361 kcal Electronic energy + Delta-G solvation = -20308.820027 eV Core-core repulsion = 17123.262991 eV Total energy + Delta-G solvation = -3185.557036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82908 -39.12061 -36.63852 -34.75740 -33.67064 -33.31663 -31.66841 -30.28129 -28.73403 -27.08336 -26.10633 -23.82921 -23.10789 -21.14048 -20.78154 -20.19286 -18.20144 -17.22919 -16.50101 -16.37599 -15.65339 -15.61765 -14.88121 -14.66408 -14.47366 -14.24687 -13.99638 -13.83340 -13.28674 -13.06108 -12.84914 -12.79694 -12.59328 -12.34570 -12.04317 -11.99095 -11.72985 -11.06172 -10.80163 -10.73265 -10.58081 -10.19876 -9.94478 -9.74124 -9.49088 -9.14662 -9.01099 -8.97512 -8.38319 -7.06386 -6.03005 -4.06064 1.20964 1.50856 2.65480 2.85383 3.30224 3.36605 3.39298 3.61427 4.01645 4.39245 4.43737 4.64055 4.77335 4.82971 4.97319 5.02616 5.09781 5.13948 5.29366 5.32873 5.47344 5.52173 5.66326 5.68270 5.71631 5.94059 6.04725 6.10592 6.30073 6.56823 6.57875 6.77434 6.96050 7.13061 7.40837 7.61598 7.74202 7.83691 7.95619 8.03808 8.37006 8.39271 9.00529 9.58253 11.08324 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034053 B = 0.002688 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.059139 B =10415.006753 C =11200.704182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.494 3.506 3 O -0.482 6.482 4 N -0.661 5.661 5 C 0.282 3.718 6 N -0.430 5.430 7 C 0.050 3.950 8 C 0.157 3.843 9 N -0.736 5.736 10 C 0.118 3.882 11 C -0.119 4.119 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.107 4.107 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.411 0.589 28 H 0.158 0.842 29 H 0.398 0.602 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.271 -15.287 0.072 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.280 3.720 3 O -0.352 6.352 4 N -0.311 5.311 5 C 0.050 3.950 6 N -0.142 5.142 7 C -0.114 4.114 8 C 0.049 3.951 9 N -0.364 5.364 10 C -0.006 4.006 11 C -0.157 4.157 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.171 4.171 22 C -0.128 4.128 23 C -0.164 4.164 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.097 0.903 27 H 0.248 0.752 28 H 0.175 0.825 29 H 0.233 0.767 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.255 -13.277 0.078 26.778 hybrid contribution 1.549 -1.584 -0.003 2.216 sum -21.706 -14.861 0.075 26.306 Atomic orbital electron populations 1.21892 0.91374 1.04917 1.04772 1.20988 0.90437 0.83632 0.76961 1.90856 1.69903 1.30410 1.44008 1.43601 1.03800 1.10020 1.73655 1.17956 0.84239 0.89204 1.03574 1.67441 1.08904 1.26568 1.11246 1.22269 0.87978 0.97368 1.03832 1.18948 0.85575 0.94544 0.96048 1.44956 1.01522 1.09166 1.80794 1.21679 0.94175 0.83769 1.00936 1.21837 0.90821 1.02146 1.00887 1.19034 0.94653 0.90094 0.97613 1.21198 0.91381 0.92564 1.50958 0.92687 1.25032 0.98944 0.95233 0.95260 1.69960 1.34982 0.97799 1.50538 0.86580 0.85471 0.77752 0.78112 1.20645 1.21178 1.19909 1.20673 0.92963 0.96679 1.06796 1.19962 0.93787 0.94406 1.04599 1.20663 0.99442 0.93930 1.02402 0.88840 0.88671 0.90321 0.75219 0.82502 0.76714 0.92315 0.92283 0.92760 0.92773 0.96279 0.96269 0.92897 0.84894 0.90904 0.90895 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.30 36.01 0.37 -0.63 16 2 C 0.49 5.69 7.90 -10.98 -0.09 5.60 16 3 O -0.48 -8.27 15.35 5.55 0.09 -8.18 16 4 N -0.66 -6.67 5.31 -11.39 -0.06 -6.73 16 5 C 0.28 3.80 7.41 -154.53 -1.15 2.65 16 6 N -0.43 -7.25 7.86 -12.17 -0.10 -7.35 16 7 C 0.05 0.79 10.49 -17.33 -0.18 0.61 16 8 C 0.16 2.22 6.68 -83.55 -0.56 1.66 16 9 N -0.74 -10.34 5.75 -58.48 -0.34 -10.68 16 10 C 0.12 1.95 4.93 -4.05 -0.02 1.93 16 11 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.14 -1.65 9.72 -39.12 -0.38 -2.03 16 22 C -0.12 -1.34 5.91 -104.31 -0.62 -1.95 16 23 C -0.11 -0.69 9.58 36.00 0.35 -0.34 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.24 8.14 -51.92 -0.42 -0.19 16 27 H 0.41 2.35 6.67 -40.82 -0.27 2.07 16 28 H 0.16 2.51 6.75 -52.48 -0.35 2.16 16 29 H 0.40 4.91 8.50 -40.82 -0.35 4.56 16 30 H 0.06 0.99 7.97 -51.92 -0.41 0.58 16 31 H 0.06 1.00 7.95 -51.93 -0.41 0.58 16 32 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 40 H 0.06 0.29 6.55 -51.93 -0.34 -0.05 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -35.43 337.89 -8.47 -43.90 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.91 Total: 1.39 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.96 Total: -7.88 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.24 Total: -50.86 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.43 -8.47 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.564 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds