Wall clock time and date at job start Mon Mar 30 2020 01:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38734 * 120.31566 * 2 1 4 4 C 1.38456 * 118.50348 * 179.70457 * 3 2 1 5 5 C 1.39369 * 119.06576 * 0.52706 * 4 3 2 6 6 C 1.48140 * 119.73160 * 179.73289 * 5 4 3 7 7 N 1.29995 * 120.00119 * 340.03940 * 6 5 4 8 8 O 1.41592 * 119.99778 * 352.20642 * 7 6 5 9 9 N 1.38505 * 119.99603 * 160.03814 * 6 5 4 10 10 C 1.46502 * 119.99798 * 179.97438 * 9 6 5 11 11 H 1.09001 * 109.47061 * 35.00397 * 10 9 6 12 12 C 1.52996 * 109.47694 * 275.00323 * 10 9 6 13 13 C 1.53001 * 109.46898 * 155.00210 * 10 9 6 14 14 C 1.53000 * 109.47061 * 295.00104 * 13 10 9 15 15 C 1.50701 * 109.47327 * 180.02562 * 14 13 10 16 16 H 1.08007 * 119.99895 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00541 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00287 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99841 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47103 * 89.99809 * 19 17 15 21 21 H 1.48494 * 109.47282 * 210.00589 * 19 17 15 22 22 H 1.48501 * 109.47052 * 330.00445 * 19 17 15 23 23 N 1.32719 * 120.53059 * 359.45850 * 5 4 3 24 24 C 1.31662 * 121.62839 * 0.27262 * 23 5 4 25 25 H 1.08993 * 109.47385 * 270.03027 * 1 2 3 26 26 H 1.09006 * 109.46782 * 30.03084 * 1 2 3 27 27 H 1.09000 * 109.47063 * 150.02304 * 1 2 3 28 28 H 1.08010 * 120.74624 * 359.97009 * 3 2 1 29 29 H 1.08005 * 120.46325 * 180.27929 * 4 3 2 30 30 H 0.96705 * 113.99839 * 179.97438 * 8 7 6 31 31 H 0.96996 * 120.00588 * 0.02562 * 9 6 5 32 32 H 1.09001 * 109.46927 * 300.00157 * 12 10 9 33 33 H 1.08999 * 109.47184 * 59.99657 * 12 10 9 34 34 H 1.08998 * 109.47354 * 179.97438 * 12 10 9 35 35 H 1.08990 * 109.47538 * 55.00225 * 13 10 9 36 36 H 1.09004 * 109.46992 * 175.00332 * 13 10 9 37 37 H 1.09006 * 109.47365 * 300.00153 * 14 13 10 38 38 H 1.08997 * 109.47365 * 60.00452 * 14 13 10 39 39 H 0.96994 * 119.99937 * 180.02562 * 18 17 15 40 40 H 1.07991 * 119.55440 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.1976 0.0000 4 6 3.5912 1.1539 0.0063 5 6 4.2294 -0.0851 0.0011 6 6 5.7095 -0.1491 0.0017 7 7 6.4048 0.8817 -0.3776 8 8 5.7547 2.0038 -0.9459 9 7 6.3523 -1.3073 0.4065 10 6 7.8159 -1.3708 0.4065 11 1 8.2219 -0.3962 0.6775 12 6 8.3098 -1.7590 -0.9885 13 6 8.2809 -2.4170 1.4215 14 6 7.8952 -1.9661 2.8318 15 6 8.3537 -2.9962 3.8316 16 1 8.8684 -3.8841 3.4948 17 6 8.1153 -2.8060 5.1762 18 7 8.5150 -3.7052 6.0486 19 14 7.2245 -1.2708 5.7587 20 1 5.7624 -1.5286 5.7897 21 1 7.6933 -0.9137 7.1217 22 1 7.5098 -0.1497 4.8276 23 7 3.5219 -1.2080 0.0012 24 6 2.2054 -1.1945 0.0007 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6847 2.1429 -0.0005 29 1 4.1679 2.0670 0.0110 30 1 6.3539 2.7204 -1.1964 31 1 5.8335 -2.0765 0.6892 32 1 7.9038 -2.7336 -1.2595 33 1 7.9785 -1.0137 -1.7116 34 1 9.3987 -1.8058 -0.9885 35 1 7.8045 -3.3725 1.2026 36 1 9.3635 -2.5280 1.3589 37 1 8.3717 -1.0105 3.0508 38 1 6.8127 -1.8551 2.8945 39 1 8.3469 -3.5715 6.9945 40 1 1.6632 -2.1284 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:52 Heat of formation + Delta-G solvation = 37.444617 kcal Electronic energy + Delta-G solvation = -21193.368269 eV Core-core repulsion = 18009.666399 eV Total energy + Delta-G solvation = -3183.701870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44382 -37.97303 -36.16283 -34.30914 -33.28229 -32.47679 -31.69961 -30.00283 -29.05865 -27.46162 -25.30742 -23.68988 -22.99602 -21.42432 -20.33615 -20.01364 -18.04606 -16.79366 -16.67223 -16.10817 -15.91320 -15.18871 -14.81281 -14.55399 -14.28543 -13.85432 -13.78292 -13.29115 -13.17961 -12.87153 -12.83930 -12.79939 -12.57719 -12.41013 -11.90335 -11.70022 -11.42908 -10.98448 -10.96831 -10.41374 -10.02599 -9.93129 -9.76413 -9.70669 -9.53405 -9.49024 -9.14345 -8.88970 -8.51308 -7.70872 -6.02352 -3.99757 0.64444 1.15619 2.59457 3.04212 3.32478 3.39722 3.45813 3.66039 3.81596 4.26987 4.47776 4.57689 4.70749 4.77857 4.92532 5.21884 5.27337 5.32298 5.38415 5.41022 5.61627 5.62924 5.71565 5.75612 5.92213 6.03744 6.11049 6.17117 6.37940 6.41586 6.50258 6.68780 6.75437 6.90471 7.33662 7.41102 7.54185 7.61415 7.81600 7.86814 8.33970 8.55932 9.03106 9.61121 11.11162 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.005048 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.942026 B = 5544.930856 C = 6494.880006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.129 4.129 3 C -0.087 4.087 4 C -0.121 4.121 5 C 0.112 3.888 6 C 0.433 3.567 7 N -0.417 5.417 8 O -0.415 6.415 9 N -0.677 5.677 10 C 0.145 3.855 11 H 0.083 0.917 12 C -0.159 4.159 13 C -0.112 4.112 14 C -0.012 4.012 15 C -0.519 4.519 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.266 1.266 23 N -0.460 5.460 24 C 0.096 3.904 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.162 0.838 30 H 0.391 0.609 31 H 0.418 0.582 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.015 0.985 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 10.180 -15.414 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.112 4.112 4 C -0.142 4.142 5 C -0.027 4.027 6 C 0.154 3.846 7 N -0.185 5.185 8 O -0.317 6.317 9 N -0.320 5.320 10 C 0.041 3.959 11 H 0.102 0.898 12 C -0.218 4.218 13 C -0.150 4.150 14 C -0.050 4.050 15 C -0.557 4.557 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.190 1.190 23 N -0.169 5.169 24 C -0.063 4.063 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.179 0.821 30 H 0.238 0.762 31 H 0.257 0.743 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.548 9.425 -15.222 21.863 hybrid contribution -1.551 1.532 0.537 2.245 sum -14.098 10.957 -14.685 23.119 Atomic orbital electron populations 1.20746 0.90073 1.03159 1.02779 1.21095 0.97707 0.94338 1.00028 1.21486 0.93817 0.98238 0.97703 1.22645 0.95040 0.99615 0.96931 1.20500 0.93086 0.89585 0.99518 1.20094 0.85412 0.88011 0.91044 1.76839 1.20375 0.96191 1.25055 1.88240 1.34978 1.27099 1.81381 1.44470 1.06747 1.10938 1.69838 1.21226 0.78289 1.01203 0.95154 0.89844 1.22161 1.00985 1.01272 0.97350 1.21808 1.01106 0.96812 0.95255 1.19563 0.96157 0.97016 0.92225 1.21170 1.37551 1.06393 0.90616 0.90984 1.25005 0.95315 0.96137 0.96883 1.69914 1.47449 1.34966 1.02024 0.86818 0.80189 0.84549 0.77980 1.20466 1.21423 1.19026 1.67624 1.08530 1.30467 1.10321 1.22636 0.89391 0.97654 0.96642 0.90655 0.91290 0.91014 0.84557 0.82064 0.76168 0.74327 0.92769 0.92841 0.91873 0.92156 0.91002 0.96709 0.97023 0.92807 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.03 36.01 0.36 -0.37 16 2 C -0.13 -1.32 5.90 -104.39 -0.62 -1.93 16 3 C -0.09 -0.93 9.85 -39.32 -0.39 -1.32 16 4 C -0.12 -1.63 8.83 -39.08 -0.35 -1.97 16 5 C 0.11 1.75 6.64 -83.00 -0.55 1.20 16 6 C 0.43 7.28 7.71 -153.78 -1.19 6.09 16 7 N -0.42 -6.75 11.03 32.65 0.36 -6.39 16 8 O -0.42 -5.42 11.02 -11.47 -0.13 -5.54 16 9 N -0.68 -11.42 4.64 -51.92 -0.24 -11.66 16 10 C 0.15 2.44 2.59 -67.93 -0.18 2.26 16 11 H 0.08 1.49 7.55 -51.93 -0.39 1.10 16 12 C -0.16 -2.27 9.50 37.16 0.35 -1.91 16 13 C -0.11 -2.16 4.69 -26.73 -0.13 -2.28 16 14 C -0.01 -0.29 3.93 -27.88 -0.11 -0.40 16 15 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 16 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 19 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 23 N -0.46 -6.91 9.77 -9.81 -0.10 -7.00 16 24 C 0.10 1.15 10.85 -17.58 -0.19 0.96 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.16 2.10 5.41 -52.48 -0.28 1.81 16 30 H 0.39 3.38 9.28 45.56 0.42 3.80 16 31 H 0.42 7.06 8.18 -40.82 -0.33 6.72 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.28 7.18 -51.93 -0.37 -0.09 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -33.76 336.56 -7.47 -41.23 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.14 Total: 6.97 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.40 Total: -13.01 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.80 Total: -52.52 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.13 Total: -5.54 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.76 -7.47 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.675 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds