Wall clock time and date at job start Mon Mar 30 2020 01:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38734 * 120.31566 * 2 1 4 4 C 1.38456 * 118.50348 * 179.70457 * 3 2 1 5 5 C 1.39369 * 119.06576 * 0.52706 * 4 3 2 6 6 C 1.48140 * 119.73160 * 179.73289 * 5 4 3 7 7 N 1.29995 * 120.00119 * 340.03940 * 6 5 4 8 8 O 1.41592 * 119.99778 * 352.20642 * 7 6 5 9 9 N 1.38505 * 119.99603 * 160.03814 * 6 5 4 10 10 C 1.46502 * 119.99798 * 179.97438 * 9 6 5 11 11 H 1.09001 * 109.47061 * 35.00397 * 10 9 6 12 12 C 1.52996 * 109.47694 * 275.00323 * 10 9 6 13 13 C 1.53001 * 109.46898 * 155.00210 * 10 9 6 14 14 C 1.53000 * 109.47061 * 295.00104 * 13 10 9 15 15 C 1.50701 * 109.47327 * 180.02562 * 14 13 10 16 16 H 1.08007 * 119.99895 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00541 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00287 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99841 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47103 * 89.99809 * 19 17 15 21 21 H 1.48494 * 109.47282 * 210.00589 * 19 17 15 22 22 H 1.48501 * 109.47052 * 330.00445 * 19 17 15 23 23 N 1.32719 * 120.53059 * 359.45850 * 5 4 3 24 24 C 1.31662 * 121.62839 * 0.27262 * 23 5 4 25 25 H 1.08993 * 109.47385 * 270.03027 * 1 2 3 26 26 H 1.09006 * 109.46782 * 30.03084 * 1 2 3 27 27 H 1.09000 * 109.47063 * 150.02304 * 1 2 3 28 28 H 1.08010 * 120.74624 * 359.97009 * 3 2 1 29 29 H 1.08005 * 120.46325 * 180.27929 * 4 3 2 30 30 H 0.96705 * 113.99839 * 179.97438 * 8 7 6 31 31 H 0.96996 * 120.00588 * 0.02562 * 9 6 5 32 32 H 1.09001 * 109.46927 * 300.00157 * 12 10 9 33 33 H 1.08999 * 109.47184 * 59.99657 * 12 10 9 34 34 H 1.08998 * 109.47354 * 179.97438 * 12 10 9 35 35 H 1.08990 * 109.47538 * 55.00225 * 13 10 9 36 36 H 1.09004 * 109.46992 * 175.00332 * 13 10 9 37 37 H 1.09006 * 109.47365 * 300.00153 * 14 13 10 38 38 H 1.08997 * 109.47365 * 60.00452 * 14 13 10 39 39 H 0.96994 * 119.99937 * 180.02562 * 18 17 15 40 40 H 1.07991 * 119.55440 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.1976 0.0000 4 6 3.5912 1.1539 0.0063 5 6 4.2294 -0.0851 0.0011 6 6 5.7095 -0.1491 0.0017 7 7 6.4048 0.8817 -0.3776 8 8 5.7547 2.0038 -0.9459 9 7 6.3523 -1.3073 0.4065 10 6 7.8159 -1.3708 0.4065 11 1 8.2219 -0.3962 0.6775 12 6 8.3098 -1.7590 -0.9885 13 6 8.2809 -2.4170 1.4215 14 6 7.8952 -1.9661 2.8318 15 6 8.3537 -2.9962 3.8316 16 1 8.8684 -3.8841 3.4948 17 6 8.1153 -2.8060 5.1762 18 7 8.5150 -3.7052 6.0486 19 14 7.2245 -1.2708 5.7587 20 1 5.7624 -1.5286 5.7897 21 1 7.6933 -0.9137 7.1217 22 1 7.5098 -0.1497 4.8276 23 7 3.5219 -1.2080 0.0012 24 6 2.2054 -1.1945 0.0007 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6847 2.1429 -0.0005 29 1 4.1679 2.0670 0.0110 30 1 6.3539 2.7204 -1.1964 31 1 5.8335 -2.0765 0.6892 32 1 7.9038 -2.7336 -1.2595 33 1 7.9785 -1.0137 -1.7116 34 1 9.3987 -1.8058 -0.9885 35 1 7.8045 -3.3725 1.2026 36 1 9.3635 -2.5280 1.3589 37 1 8.3717 -1.0105 3.0508 38 1 6.8127 -1.8551 2.8945 39 1 8.3469 -3.5715 6.9945 40 1 1.6632 -2.1284 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:52 Heat of formation + Delta-G solvation = 14.459080 kcal Electronic energy + Delta-G solvation = -21194.364997 eV Core-core repulsion = 18009.666399 eV Total energy + Delta-G solvation = -3184.698598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37512 -39.20668 -37.36389 -35.62573 -34.76930 -33.84563 -32.82489 -31.61679 -30.29974 -28.23248 -27.13595 -24.58920 -24.02143 -22.95258 -21.81407 -21.32107 -19.25521 -18.74028 -17.78968 -17.20047 -16.96652 -16.41543 -16.22224 -15.89837 -15.49571 -15.09714 -14.85679 -14.74553 -14.44773 -14.25090 -14.07333 -13.90042 -13.59028 -13.32621 -13.27473 -12.94277 -12.88780 -12.68086 -12.32656 -11.91414 -11.82351 -11.57955 -11.35777 -11.20254 -10.85540 -10.78798 -10.72559 -10.54202 -9.82273 -8.90504 -8.31530 -6.33665 -0.30146 0.27155 1.29103 1.31020 1.43214 1.49443 1.90664 2.31780 2.63995 2.84436 3.04172 3.31409 3.86078 3.89468 3.97724 4.00285 4.04425 4.28436 4.34857 4.37707 4.69867 4.71630 4.82390 4.84299 4.86397 4.91684 4.99813 5.09231 5.15386 5.16824 5.26576 5.36591 5.48357 5.53702 5.64360 5.65674 5.73222 6.27918 6.32394 6.57949 6.74440 6.87155 7.21827 7.30771 8.85270 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.005048 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.942026 B = 5544.930856 C = 6494.880006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.130 4.130 5 C 0.078 3.922 6 C 0.420 3.580 7 N -0.433 5.433 8 O -0.409 6.409 9 N -0.684 5.684 10 C 0.156 3.844 11 H 0.073 0.927 12 C -0.148 4.148 13 C -0.102 4.102 14 C -0.005 4.005 15 C -0.527 4.527 16 H 0.039 0.961 17 C 0.010 3.990 18 N -0.948 5.948 19 Si 0.942 3.058 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.257 1.257 23 N -0.487 5.487 24 C 0.081 3.919 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.407 0.593 31 H 0.415 0.585 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.777 11.984 -16.408 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.113 4.113 4 C -0.152 4.152 5 C -0.060 4.060 6 C 0.142 3.858 7 N -0.199 5.199 8 O -0.315 6.315 9 N -0.327 5.327 10 C 0.052 3.948 11 H 0.091 0.909 12 C -0.207 4.207 13 C -0.140 4.140 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.058 0.942 17 C -0.187 4.187 18 N -0.589 5.589 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.181 1.181 23 N -0.197 5.197 24 C -0.079 4.079 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.187 0.813 29 H 0.178 0.822 30 H 0.258 0.742 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.781 11.249 -16.239 24.673 hybrid contribution -0.907 0.957 0.805 1.545 sum -15.688 12.207 -15.434 25.166 Atomic orbital electron populations 1.20843 0.87132 1.04729 1.03795 1.21516 0.99688 0.93421 0.97411 1.21895 0.92874 0.99965 0.96550 1.22744 0.96385 0.98785 0.97274 1.20498 0.92628 0.90681 1.02172 1.20268 0.86457 0.87880 0.91219 1.76691 1.21370 0.96931 1.24882 1.88229 1.35482 1.26812 1.81007 1.44420 1.06500 1.11286 1.70536 1.21022 0.78636 0.99506 0.95676 0.90926 1.22054 1.01810 1.01381 0.95447 1.21663 1.01382 0.97644 0.93343 1.19460 0.95762 0.95293 0.93767 1.21530 1.36789 1.06358 0.91861 0.94244 1.25876 0.96300 0.99383 0.97145 1.70047 1.49157 1.37175 1.02551 0.85774 0.79083 0.80674 0.77771 1.19668 1.20586 1.18102 1.67561 1.10061 1.30732 1.11333 1.23179 0.88738 0.99564 0.96413 0.89660 0.89608 0.89663 0.81340 0.82161 0.74189 0.74688 0.92248 0.92924 0.90459 0.92048 0.90694 0.97197 0.97069 0.92520 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.03 71.24 0.71 -0.29 16 2 C -0.12 -2.08 5.90 -19.71 -0.12 -2.20 16 3 C -0.09 -1.65 9.85 22.44 0.22 -1.43 16 4 C -0.13 -3.35 8.83 22.59 0.20 -3.15 16 5 C 0.08 2.41 6.64 41.91 0.28 2.69 16 6 C 0.42 14.07 7.71 136.35 1.05 15.12 16 7 N -0.43 -13.81 11.03 -50.63 -0.56 -14.37 16 8 O -0.41 -10.25 11.02 -38.77 -0.43 -10.67 16 9 N -0.68 -23.10 4.64 -318.18 -1.48 -24.58 16 10 C 0.16 5.16 2.59 44.99 0.12 5.28 16 11 H 0.07 2.57 7.55 -2.39 -0.02 2.55 16 12 C -0.15 -4.06 9.50 71.98 0.68 -3.38 16 13 C -0.10 -3.94 4.69 30.59 0.14 -3.80 16 14 C -0.01 -0.26 3.93 29.85 0.12 -0.14 16 15 C -0.53 -30.88 9.66 25.60 0.25 -30.64 16 16 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 17 C 0.01 0.59 5.47 84.65 0.46 1.06 16 18 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 19 Si 0.94 46.48 27.47 68.60 1.88 48.36 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 23 N -0.49 -14.41 9.77 -184.96 -1.81 -16.21 16 24 C 0.08 1.80 10.85 84.75 0.92 2.71 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.56 8.09 -2.38 -0.02 0.54 16 27 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.16 4.00 5.41 -2.91 -0.02 3.98 16 30 H 0.41 6.48 9.28 -74.05 -0.69 5.79 16 31 H 0.42 14.20 8.18 -92.71 -0.76 13.44 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 38 H 0.01 0.53 7.18 -2.39 -0.02 0.52 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.18 2.92 8.06 -2.92 -0.02 2.90 16 Total: -1.00 -73.84 336.56 2.51 -71.33 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.45 Total: 24.37 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 5.04 Total: -18.18 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.54 Total: -115.21 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.43 Total: -10.67 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.36 kcal Total: -73.84 2.51 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.791 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds