Wall clock time and date at job start Mon Mar 30 2020 02:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38114 * 120.77145 * 2 1 4 4 N 1.32513 * 119.26749 * 180.27636 * 3 2 1 5 5 C 1.32324 * 120.94635 * 359.74221 * 4 3 2 6 6 O 1.35457 * 119.15240 * 180.02562 * 5 4 3 7 7 N 1.32265 * 121.69193 * 0.02562 * 5 4 3 8 8 C 1.32944 * 120.63061 * 359.97438 * 7 5 4 9 9 N 1.38535 * 120.49869 * 179.97438 * 8 7 5 10 10 C 1.46500 * 119.99469 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47089 * 154.99801 * 10 9 8 12 12 C 1.52997 * 109.47415 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47164 * 300.00027 * 12 11 10 14 14 C 1.50697 * 109.47239 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00021 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99560 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47178 * 60.00416 * 18 16 14 20 20 H 1.48496 * 109.47539 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47420 * 300.00642 * 18 16 14 22 22 C 1.52999 * 109.46626 * 59.99702 * 13 12 11 23 23 C 1.52996 * 109.47249 * 274.99675 * 10 9 8 24 24 H 1.09007 * 109.47225 * 270.20548 * 1 2 3 25 25 H 1.09000 * 109.47150 * 30.20698 * 1 2 3 26 26 H 1.09001 * 109.47520 * 150.20661 * 1 2 3 27 27 H 1.07997 * 120.36830 * 0.02562 * 3 2 1 28 28 H 0.96703 * 114.00187 * 270.02089 * 6 5 4 29 29 H 0.96992 * 120.00298 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.47738 * 35.00145 * 10 9 8 31 31 H 1.09000 * 109.46986 * 59.99786 * 11 10 9 32 32 H 1.09001 * 109.47601 * 300.00509 * 11 10 9 33 33 H 1.09001 * 109.46922 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.47140 * 59.99976 * 12 11 10 35 35 H 1.09000 * 109.47050 * 300.00004 * 13 12 11 36 36 H 0.97002 * 119.99397 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47160 * 60.00369 * 22 13 12 38 38 H 1.09002 * 109.46719 * 180.02562 * 22 13 12 39 39 H 1.09000 * 109.47054 * 300.00354 * 23 10 9 40 40 H 1.09001 * 109.46997 * 60.00087 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.1867 0.0000 4 7 3.5382 1.1519 -0.0056 5 6 4.1887 -0.0004 -0.0060 6 8 5.5432 0.0065 -0.0113 7 7 3.5502 -1.1587 -0.0014 8 6 2.2214 -1.1997 0.0043 9 7 1.5554 -2.4144 0.0085 10 6 2.3159 -3.6666 0.0073 11 6 1.4656 -4.7803 0.6218 12 6 2.2595 -6.0882 0.6199 13 6 2.6256 -6.4606 -0.8183 14 6 3.4081 -7.7485 -0.8200 15 1 3.6225 -8.2513 0.1114 16 6 3.8494 -8.2854 -2.0109 17 7 3.5878 -7.6732 -3.1451 18 14 4.8187 -9.8821 -2.0132 19 1 3.9936 -10.9630 -1.4164 20 1 5.1741 -10.2435 -3.4090 21 1 6.0595 -9.7091 -1.2159 22 6 3.4758 -5.3468 -1.4327 23 6 2.6825 -4.0393 -1.4306 24 1 -0.3634 0.0037 1.0277 25 1 -0.3633 0.8881 -0.5170 26 1 -0.3634 -0.8918 -0.5106 27 1 1.6923 2.1325 0.0004 28 1 5.9332 0.0072 -0.8962 29 1 0.5857 -2.4359 0.0131 30 1 3.2263 -3.5395 0.5930 31 1 0.5552 -4.9075 0.0361 32 1 1.2043 -4.5149 1.6462 33 1 1.6535 -6.8816 1.0573 34 1 3.1702 -5.9613 1.2054 35 1 1.7149 -6.5875 -1.4037 36 1 3.8980 -8.0511 -3.9829 37 1 4.3865 -5.2199 -0.8472 38 1 3.7362 -5.6119 -2.4574 39 1 1.7720 -4.1665 -2.0163 40 1 3.2882 -3.2458 -1.8684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:13 Heat of formation + Delta-G solvation = -7.468286 kcal Electronic energy + Delta-G solvation = -21625.448992 eV Core-core repulsion = 18439.799552 eV Total energy + Delta-G solvation = -3185.649440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08356 -38.42143 -37.34616 -35.31041 -33.32194 -32.92365 -31.46134 -29.80921 -28.58686 -26.95362 -24.88571 -23.29809 -22.69514 -21.66601 -20.83657 -19.47104 -18.66839 -17.78620 -16.86037 -16.33773 -15.67662 -15.24736 -14.60481 -14.48470 -14.33951 -13.79659 -13.71977 -13.28047 -12.97704 -12.74228 -12.58336 -12.30793 -12.02720 -11.93372 -11.47457 -11.23989 -11.07802 -10.89639 -10.75605 -10.55493 -10.42539 -10.26843 -9.96334 -9.53524 -9.37877 -9.04086 -8.94919 -8.68816 -8.30398 -7.90335 -5.97544 -4.03684 0.92803 1.39749 2.94386 3.32490 3.37262 3.39905 3.42687 3.84539 4.37873 4.44740 4.65771 4.84900 5.03272 5.24742 5.27834 5.33394 5.39881 5.48308 5.69000 5.73081 5.81377 6.06517 6.13508 6.20877 6.28946 6.39976 6.51801 6.65435 6.68696 6.76157 6.87614 7.05649 7.16994 7.27542 7.46017 7.53740 7.67007 7.75742 8.01195 8.15683 8.29850 8.47285 9.00075 9.61045 11.08025 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004091 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.269801 B = 6841.859005 C = 7427.099996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.277 4.277 3 C 0.190 3.810 4 N -0.575 5.575 5 C 0.528 3.472 6 O -0.462 6.462 7 N -0.574 5.574 8 C 0.465 3.535 9 N -0.697 5.697 10 C 0.151 3.849 11 C -0.122 4.122 12 C -0.104 4.104 13 C 0.048 3.952 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.106 4.106 23 C -0.120 4.120 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.166 0.834 28 H 0.410 0.590 29 H 0.407 0.593 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.036 0.964 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 15.487 4.364 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.288 4.288 3 C 0.028 3.972 4 N -0.305 5.305 5 C 0.222 3.778 6 O -0.265 6.265 7 N -0.309 5.309 8 C 0.219 3.781 9 N -0.328 5.328 10 C 0.048 3.952 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.159 4.159 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.183 0.817 28 H 0.269 0.731 29 H 0.245 0.755 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.038 15.271 4.764 16.771 hybrid contribution -0.475 -0.911 -0.590 1.185 sum -5.513 14.360 4.174 15.938 Atomic orbital electron populations 1.20435 0.89558 1.02859 1.02200 1.20905 0.98478 0.93579 1.15800 1.22519 0.88075 0.97346 0.89223 1.67958 1.10184 1.29908 1.22409 1.19890 0.85486 0.82997 0.89419 1.84673 1.12414 1.95256 1.34155 1.67446 1.08446 1.30697 1.24329 1.18107 0.87117 0.86475 0.86415 1.45124 1.08626 1.02798 1.76269 1.21262 0.94861 0.80640 0.98485 1.21844 0.98972 0.96142 0.99092 1.21586 0.98210 0.93375 1.01092 1.18678 0.95527 0.93362 0.89482 1.21182 1.34572 1.06841 0.92622 0.92815 1.24956 0.96095 0.97188 0.95683 1.69863 1.46543 1.39031 0.97542 0.86704 0.80589 0.84072 0.76899 1.20362 1.21363 1.20303 1.21578 0.97144 0.91315 1.04405 1.21953 1.00261 0.99491 0.94164 0.91312 0.91063 0.91873 0.81702 0.73103 0.75519 0.89464 0.92220 0.93083 0.92960 0.93059 0.95730 0.93043 0.94539 0.88885 0.93162 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.64 36.00 0.35 -0.36 16 2 C -0.28 -3.16 5.93 -104.15 -0.62 -3.78 16 3 C 0.19 2.15 10.98 -17.30 -0.19 1.96 16 4 N -0.57 -8.13 10.46 -14.82 -0.15 -8.28 16 5 C 0.53 8.12 8.71 -91.29 -0.80 7.32 16 6 O -0.46 -6.33 13.64 -18.06 -0.25 -6.58 16 7 N -0.57 -9.46 9.37 -13.97 -0.13 -9.59 16 8 C 0.47 6.70 7.47 -154.82 -1.16 5.55 16 9 N -0.70 -9.56 5.13 -53.80 -0.28 -9.83 16 10 C 0.15 2.51 2.48 -67.93 -0.17 2.34 16 11 C -0.12 -1.98 5.39 -26.73 -0.14 -2.12 16 12 C -0.10 -2.07 5.14 -26.73 -0.14 -2.21 16 13 C 0.05 1.15 2.10 -91.77 -0.19 0.96 16 14 C -0.51 -13.88 8.56 -34.44 -0.29 -14.18 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.11 -2.45 4.98 -26.76 -0.13 -2.58 16 23 C -0.12 -2.30 5.50 -26.76 -0.15 -2.45 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 26 H 0.06 0.47 6.67 -51.93 -0.35 0.12 16 27 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.41 3.53 9.06 45.56 0.41 3.94 16 29 H 0.41 4.50 6.72 -40.82 -0.27 4.23 16 30 H 0.09 1.63 7.56 -51.93 -0.39 1.24 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -31.36 324.55 -9.14 -40.50 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.11 Total: 5.23 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.73 Total: -7.96 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.07 Total: -52.23 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.25 Total: -6.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.36 -9.14 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.037 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds