Wall clock time and date at job start Mon Mar 30 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38114 * 120.77145 * 2 1 4 4 N 1.32513 * 119.26749 * 180.27636 * 3 2 1 5 5 C 1.32324 * 120.94635 * 359.74221 * 4 3 2 6 6 O 1.35457 * 119.15240 * 180.02562 * 5 4 3 7 7 N 1.32265 * 121.69193 * 0.02562 * 5 4 3 8 8 C 1.32944 * 120.63061 * 359.97438 * 7 5 4 9 9 N 1.38535 * 120.49869 * 179.97438 * 8 7 5 10 10 C 1.46500 * 119.99469 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47089 * 154.99801 * 10 9 8 12 12 C 1.52997 * 109.47415 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47164 * 300.00027 * 12 11 10 14 14 C 1.50697 * 109.47239 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00021 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99560 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47178 * 60.00416 * 18 16 14 20 20 H 1.48496 * 109.47539 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47420 * 300.00642 * 18 16 14 22 22 C 1.52999 * 109.46626 * 59.99702 * 13 12 11 23 23 C 1.52996 * 109.47249 * 274.99675 * 10 9 8 24 24 H 1.09007 * 109.47225 * 270.20548 * 1 2 3 25 25 H 1.09000 * 109.47150 * 30.20698 * 1 2 3 26 26 H 1.09001 * 109.47520 * 150.20661 * 1 2 3 27 27 H 1.07997 * 120.36830 * 0.02562 * 3 2 1 28 28 H 0.96703 * 114.00187 * 270.02089 * 6 5 4 29 29 H 0.96992 * 120.00298 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.47738 * 35.00145 * 10 9 8 31 31 H 1.09000 * 109.46986 * 59.99786 * 11 10 9 32 32 H 1.09001 * 109.47601 * 300.00509 * 11 10 9 33 33 H 1.09001 * 109.46922 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.47140 * 59.99976 * 12 11 10 35 35 H 1.09000 * 109.47050 * 300.00004 * 13 12 11 36 36 H 0.97002 * 119.99397 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47160 * 60.00369 * 22 13 12 38 38 H 1.09002 * 109.46719 * 180.02562 * 22 13 12 39 39 H 1.09000 * 109.47054 * 300.00354 * 23 10 9 40 40 H 1.09001 * 109.46997 * 60.00087 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.1867 0.0000 4 7 3.5382 1.1519 -0.0056 5 6 4.1887 -0.0004 -0.0060 6 8 5.5432 0.0065 -0.0113 7 7 3.5502 -1.1587 -0.0014 8 6 2.2214 -1.1997 0.0043 9 7 1.5554 -2.4144 0.0085 10 6 2.3159 -3.6666 0.0073 11 6 1.4656 -4.7803 0.6218 12 6 2.2595 -6.0882 0.6199 13 6 2.6256 -6.4606 -0.8183 14 6 3.4081 -7.7485 -0.8200 15 1 3.6225 -8.2513 0.1114 16 6 3.8494 -8.2854 -2.0109 17 7 3.5878 -7.6732 -3.1451 18 14 4.8187 -9.8821 -2.0132 19 1 3.9936 -10.9630 -1.4164 20 1 5.1741 -10.2435 -3.4090 21 1 6.0595 -9.7091 -1.2159 22 6 3.4758 -5.3468 -1.4327 23 6 2.6825 -4.0393 -1.4306 24 1 -0.3634 0.0037 1.0277 25 1 -0.3633 0.8881 -0.5170 26 1 -0.3634 -0.8918 -0.5106 27 1 1.6923 2.1325 0.0004 28 1 5.9332 0.0072 -0.8962 29 1 0.5857 -2.4359 0.0131 30 1 3.2263 -3.5395 0.5930 31 1 0.5552 -4.9075 0.0361 32 1 1.2043 -4.5149 1.6462 33 1 1.6535 -6.8816 1.0573 34 1 3.1702 -5.9613 1.2054 35 1 1.7149 -6.5875 -1.4037 36 1 3.8980 -8.0511 -3.9829 37 1 4.3865 -5.2199 -0.8472 38 1 3.7362 -5.6119 -2.4574 39 1 1.7720 -4.1665 -2.0163 40 1 3.2882 -3.2458 -1.8684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:12 Heat of formation + Delta-G solvation = -30.794813 kcal Electronic energy + Delta-G solvation = -21626.460506 eV Core-core repulsion = 18439.799552 eV Total energy + Delta-G solvation = -3186.660954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10475 -39.81551 -38.47402 -36.63187 -34.64691 -34.26031 -32.84211 -31.43457 -30.13801 -27.79676 -26.64045 -24.55157 -23.72712 -23.20127 -22.35450 -20.81732 -20.04665 -18.86424 -18.39399 -17.93629 -16.85063 -16.59840 -16.30143 -15.52826 -15.30747 -15.11285 -14.81176 -14.80317 -14.60503 -14.07245 -13.68121 -13.46925 -13.23905 -13.01787 -12.89496 -12.87002 -12.70823 -12.51860 -12.34681 -12.13935 -11.89875 -11.80370 -11.67978 -11.20268 -10.85347 -10.68822 -10.44877 -10.35176 -10.03799 -8.97539 -8.06670 -6.20189 -0.04232 0.38986 1.41561 1.42770 1.49973 1.92665 2.39972 2.44823 2.82536 3.20095 3.45144 3.75041 3.88586 4.05146 4.08212 4.24300 4.33360 4.39254 4.54234 4.64391 4.79411 4.80500 4.87622 4.94528 4.96062 5.05342 5.10636 5.16404 5.28718 5.34326 5.43355 5.46736 5.61439 5.67727 5.74703 6.02397 6.04236 6.19074 6.42645 6.55647 6.72266 6.92471 7.27418 7.47800 8.96893 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004091 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.269801 B = 6841.859005 C = 7427.099996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.261 4.261 3 C 0.184 3.816 4 N -0.584 5.584 5 C 0.509 3.491 6 O -0.475 6.475 7 N -0.609 5.609 8 C 0.442 3.558 9 N -0.690 5.690 10 C 0.168 3.832 11 C -0.111 4.111 12 C -0.099 4.099 13 C 0.045 3.955 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.097 4.097 23 C -0.106 4.106 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.208 0.792 28 H 0.426 0.574 29 H 0.422 0.578 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.000 1.000 36 H 0.259 0.741 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.002 16.805 5.359 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.271 4.271 3 C 0.024 3.976 4 N -0.315 5.315 5 C 0.203 3.797 6 O -0.280 6.280 7 N -0.345 5.345 8 C 0.197 3.803 9 N -0.324 5.324 10 C 0.063 3.937 11 C -0.149 4.149 12 C -0.137 4.137 13 C 0.027 3.973 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.136 4.136 23 C -0.145 4.145 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.224 0.776 28 H 0.288 0.712 29 H 0.263 0.737 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.837 16.615 5.760 18.867 hybrid contribution 0.089 -1.257 -0.925 1.563 sum -6.748 15.358 4.835 17.458 Atomic orbital electron populations 1.20568 0.86499 1.04286 1.03599 1.21297 1.00473 0.92175 1.13202 1.23276 0.87226 0.99080 0.88019 1.68027 1.11744 1.29275 1.22435 1.20054 0.85888 0.83248 0.90507 1.84620 1.12288 1.95262 1.35859 1.67365 1.09990 1.31744 1.25382 1.18476 0.86944 0.87528 0.87374 1.44772 1.09018 1.01558 1.77060 1.20782 0.94778 0.82334 0.95846 1.21720 0.98430 0.93641 1.01123 1.21445 0.98682 0.95750 0.97856 1.18646 0.94046 0.92660 0.91959 1.21621 1.34958 1.08224 0.92601 0.93060 1.25707 0.97104 1.00266 0.95452 1.70008 1.47422 1.40283 0.97908 0.85752 0.79299 0.80527 0.76927 1.19516 1.21077 1.19966 1.21343 0.97087 0.93420 1.01701 1.21748 0.99339 0.96922 0.96473 0.89741 0.88646 0.91485 0.77577 0.71245 0.73739 0.91572 0.90927 0.90066 0.92420 0.93704 0.98192 0.93197 0.96102 0.92469 0.93105 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.64 71.23 0.69 -0.33 16 2 C -0.26 -5.21 5.93 -19.56 -0.12 -5.32 16 3 C 0.18 3.64 10.98 84.56 0.93 4.57 16 4 N -0.58 -15.72 10.46 -313.75 -3.28 -19.00 16 5 C 0.51 15.56 8.71 180.58 1.57 17.13 16 6 O -0.47 -13.22 13.64 -87.55 -1.19 -14.42 16 7 N -0.61 -19.98 9.37 -311.08 -2.92 -22.90 16 8 C 0.44 12.07 7.47 133.18 1.00 13.07 16 9 N -0.69 -17.63 5.13 -324.11 -1.66 -19.29 16 10 C 0.17 5.45 2.48 44.99 0.11 5.56 16 11 C -0.11 -3.38 5.39 30.59 0.16 -3.21 16 12 C -0.10 -3.89 5.14 30.60 0.16 -3.73 16 13 C 0.05 2.23 2.10 -11.54 -0.02 2.20 16 14 C -0.54 -29.59 8.56 25.60 0.22 -29.37 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.73 5.30 84.66 0.45 1.18 16 17 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 18 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.10 -4.66 4.98 30.58 0.15 -4.51 16 23 C -0.11 -4.12 5.50 30.58 0.17 -3.95 16 24 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 26 H 0.07 0.73 6.67 -2.39 -0.02 0.71 16 27 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.43 7.62 9.06 -74.06 -0.67 6.95 16 29 H 0.42 8.07 6.72 -92.71 -0.62 7.45 16 30 H 0.07 2.47 7.56 -2.39 -0.02 2.46 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.18 324.55 -1.55 -71.73 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.23 Total: 17.64 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.47 Total: -6.72 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -7.62 Total: -114.20 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.19 Total: -14.42 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.18 -1.55 -71.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.932 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds