Wall clock time and date at job start Mon Mar 30 2020 01:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34482 * 125.57338 * 2 1 4 4 C 1.46687 * 106.33502 * 179.75630 * 3 2 1 5 5 C 1.47264 * 126.94300 * 180.30003 * 4 3 2 6 6 O 1.21621 * 119.99511 * 205.82277 * 5 4 3 7 7 N 1.34767 * 119.99807 * 25.82529 * 5 4 3 8 8 C 1.47085 * 120.88666 * 6.08639 * 7 5 4 9 9 C 1.53690 * 108.27839 * 128.75554 * 8 7 5 10 10 N 1.46903 * 109.25696 * 54.08188 * 9 8 7 11 11 C 1.46904 * 110.99682 * 172.60696 * 10 9 8 12 12 C 1.50698 * 109.47392 * 294.30176 * 11 10 9 13 13 H 1.08006 * 119.99657 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00131 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99877 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47365 * 60.00115 * 16 14 12 18 18 H 1.48505 * 109.47096 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47578 * 299.99771 * 16 14 12 20 20 C 1.46895 * 111.27054 * 296.75759 * 10 9 8 21 21 C 1.47083 * 120.87922 * 186.36410 * 7 5 4 22 22 C 1.36772 * 106.11029 * 0.39701 * 4 3 2 23 23 N 1.34658 * 108.39963 * 359.60100 * 22 4 3 24 24 H 0.96999 * 124.85011 * 180.26694 * 23 22 4 25 25 H 1.08994 * 109.47340 * 270.02315 * 1 2 3 26 26 H 1.08996 * 109.46874 * 30.02452 * 1 2 3 27 27 H 1.09002 * 109.47121 * 150.02363 * 1 2 3 28 28 H 1.08005 * 126.82918 * 359.96283 * 3 2 1 29 29 H 1.09000 * 109.62632 * 248.52755 * 8 7 5 30 30 H 1.09000 * 109.62437 * 9.10225 * 8 7 5 31 31 H 1.09001 * 109.64618 * 294.07920 * 9 8 7 32 32 H 1.08993 * 109.41993 * 173.94714 * 9 8 7 33 33 H 1.08994 * 109.46893 * 54.30661 * 11 10 9 34 34 H 1.09005 * 109.46505 * 174.30273 * 11 10 9 35 35 H 0.97001 * 120.00394 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.49478 * 303.14232 * 20 10 9 37 37 H 1.09004 * 109.51623 * 183.07724 * 20 10 9 38 38 H 1.09000 * 109.62835 * 350.89598 * 21 7 5 39 39 H 1.09000 * 109.62705 * 111.47590 * 21 7 5 40 40 H 1.07997 * 125.79503 * 179.86751 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6105 0.0060 5 6 4.8978 1.4301 0.0144 6 8 5.9330 0.9820 -0.4402 7 7 4.8702 2.6767 0.5257 8 6 3.6677 3.1900 1.1995 9 6 4.0849 3.7532 2.5673 10 7 5.1586 4.7379 2.3787 11 6 5.4668 5.4283 3.6383 12 6 4.2807 6.2566 4.0604 13 1 3.3871 6.2686 3.4539 14 6 4.3363 6.9991 5.2208 15 7 5.4242 6.9841 5.9595 16 14 2.8658 8.0252 5.7444 17 1 1.6895 7.1405 5.9407 18 1 3.1775 8.7232 7.0176 19 1 2.5614 9.0273 4.6917 20 6 6.3615 4.1129 1.8129 21 6 6.0398 3.5622 0.4196 22 6 3.5998 -0.7552 0.0000 23 7 2.3007 -1.1099 0.0000 24 1 1.9757 -2.0238 0.0000 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.9629 2.1234 -0.0006 29 1 3.2189 3.9793 0.5964 30 1 2.9520 2.3798 1.3385 31 1 4.4417 2.9434 3.2037 32 1 3.2278 4.2352 3.0374 33 1 5.6896 4.6925 4.4108 34 1 6.3307 6.0774 3.4947 35 1 5.4635 7.5067 6.7758 36 1 6.6867 3.2981 2.4599 37 1 7.1559 4.8554 1.7361 38 1 6.8931 2.9983 0.0428 39 1 5.8146 4.3867 -0.2569 40 1 4.4400 -1.4337 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188191463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:48 Heat of formation + Delta-G solvation = 24.895588 kcal Electronic energy + Delta-G solvation = -21550.967151 eV Core-core repulsion = 18366.721114 eV Total energy + Delta-G solvation = -3184.246037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37239 -39.34634 -37.23558 -34.28476 -32.46074 -31.87860 -31.54907 -30.16785 -28.15065 -26.43626 -25.46521 -23.44009 -22.82350 -21.45232 -20.53478 -19.94550 -18.21628 -17.69063 -16.33230 -16.12742 -15.43160 -15.17693 -14.68868 -14.49536 -14.34429 -14.17321 -13.60103 -13.55949 -13.38762 -12.97946 -12.89926 -12.71296 -12.53258 -12.01232 -11.92338 -11.73023 -11.20684 -10.97897 -10.85372 -10.66362 -10.51921 -10.46075 -9.83252 -9.59096 -9.24298 -8.81131 -8.45312 -8.36037 -8.16540 -7.23929 -6.02684 -4.04563 1.83877 2.26783 2.98277 3.32972 3.37463 3.39428 3.40488 3.63761 4.41922 4.61709 4.88373 4.93448 4.98384 5.06071 5.29133 5.32686 5.41650 5.48798 5.54070 5.60600 5.71016 5.72159 5.80499 5.90749 5.94764 6.07646 6.17301 6.38717 6.55951 6.58888 6.65565 6.77918 6.92636 7.28880 7.29942 7.34608 7.75819 7.81678 8.07717 8.19041 8.52399 8.54038 9.02510 9.59673 11.08196 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.004351 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.248262 B = 6434.282766 C = 7521.366960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.008 3.992 3 C -0.169 4.169 4 C -0.222 4.222 5 C 0.589 3.411 6 O -0.564 6.564 7 N -0.601 5.601 8 C 0.098 3.902 9 C 0.051 3.949 10 N -0.536 5.536 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.042 3.958 21 C 0.119 3.881 22 C 0.067 3.933 23 N -0.553 5.553 24 H 0.414 0.586 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.153 0.847 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.023 0.977 32 H 0.095 0.905 33 H -0.010 1.010 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 -15.162 -11.584 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.232 4.232 5 C 0.379 3.621 6 O -0.444 6.444 7 N -0.333 5.333 8 C -0.025 4.025 9 C -0.079 4.079 10 N -0.261 5.261 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.088 4.088 21 C -0.004 4.004 22 C -0.069 4.069 23 N -0.148 5.148 24 H 0.250 0.750 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.171 0.829 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.113 0.887 33 H 0.008 0.992 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.379 -15.050 -11.971 20.976 hybrid contribution -0.495 -0.307 1.113 1.256 sum -8.874 -15.357 -10.858 20.796 Atomic orbital electron populations 1.20334 0.87763 1.03271 1.02874 1.20315 0.93582 0.86108 1.10118 1.22070 0.90750 0.98058 1.08380 1.20359 0.93136 0.92968 1.16725 1.17436 0.86911 0.80668 0.77081 1.90723 1.32739 1.71914 1.49047 1.47970 1.15703 1.13304 1.56363 1.22573 0.87039 0.99054 0.93833 1.22427 0.97371 0.93810 0.94257 1.62086 1.06082 1.26490 1.31427 1.19722 0.97486 0.92684 0.83294 1.21109 1.00248 1.26763 1.06584 0.91852 1.24987 0.96176 0.96934 0.96461 1.69948 1.27275 1.41582 1.14989 0.86561 0.82673 0.80391 0.77765 1.20289 1.21402 1.20137 1.22392 0.94402 0.97543 0.94449 1.21730 0.88350 0.92659 0.97621 1.21710 0.86052 0.95580 1.03513 1.41538 1.05814 1.08680 1.58790 0.74951 0.90836 0.89918 0.91914 0.82942 0.91064 0.88253 0.95855 0.88707 0.99181 0.95084 0.92856 0.95615 0.90204 0.89472 0.91074 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.41 36.01 0.37 -0.14 16 2 C 0.01 0.08 7.13 -81.86 -0.58 -0.51 16 3 C -0.17 -1.98 8.53 -37.50 -0.32 -2.30 16 4 C -0.22 -3.10 5.74 -103.35 -0.59 -3.69 16 5 C 0.59 10.07 7.65 -12.60 -0.10 9.98 16 6 O -0.56 -11.10 16.46 5.26 0.09 -11.02 16 7 N -0.60 -10.09 3.00 -173.51 -0.52 -10.62 16 8 C 0.10 1.53 5.36 -3.36 -0.02 1.51 16 9 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 10 N -0.54 -11.56 4.62 -235.47 -1.09 -12.65 16 11 C 0.19 5.03 4.72 -4.97 -0.02 5.00 16 12 C -0.51 -14.04 8.41 -34.44 -0.29 -14.33 16 13 H 0.06 1.70 7.13 -52.48 -0.37 1.33 16 14 C 0.06 1.57 5.46 -17.83 -0.10 1.47 16 15 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 21 C 0.12 2.01 6.61 -3.60 -0.02 1.99 16 22 C 0.07 0.75 11.78 -16.84 -0.20 0.55 16 23 N -0.55 -4.61 5.90 -9.12 -0.05 -4.66 16 24 H 0.41 1.97 8.96 -40.82 -0.37 1.61 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.15 1.66 6.40 -52.48 -0.34 1.33 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.37 4.16 -51.93 -0.22 1.16 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.90 6.67 -51.93 -0.35 1.56 16 33 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 34 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 38 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 324.82 15.07 4.90 4.90 Total: -1.00 -33.71 324.82 -8.65 -42.36 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.77 Total: 0.03 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.91 Total: 1.24 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.93 Total: -53.80 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.71 -8.65 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188191463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.255 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds