Wall clock time and date at job start Mon Mar 30 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34482 * 125.57338 * 2 1 4 4 C 1.46687 * 106.33502 * 179.75630 * 3 2 1 5 5 C 1.47264 * 126.94300 * 180.30003 * 4 3 2 6 6 O 1.21621 * 119.99511 * 205.82277 * 5 4 3 7 7 N 1.34767 * 119.99807 * 25.82529 * 5 4 3 8 8 C 1.47085 * 120.88666 * 6.08639 * 7 5 4 9 9 C 1.53690 * 108.27839 * 128.75554 * 8 7 5 10 10 N 1.46903 * 109.25696 * 54.08188 * 9 8 7 11 11 C 1.46904 * 110.99682 * 172.60696 * 10 9 8 12 12 C 1.50698 * 109.47392 * 294.30176 * 11 10 9 13 13 H 1.08006 * 119.99657 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00131 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99877 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47365 * 60.00115 * 16 14 12 18 18 H 1.48505 * 109.47096 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47578 * 299.99771 * 16 14 12 20 20 C 1.46895 * 111.27054 * 296.75759 * 10 9 8 21 21 C 1.47083 * 120.87922 * 186.36410 * 7 5 4 22 22 C 1.36772 * 106.11029 * 0.39701 * 4 3 2 23 23 N 1.34658 * 108.39963 * 359.60100 * 22 4 3 24 24 H 0.96999 * 124.85011 * 180.26694 * 23 22 4 25 25 H 1.08994 * 109.47340 * 270.02315 * 1 2 3 26 26 H 1.08996 * 109.46874 * 30.02452 * 1 2 3 27 27 H 1.09002 * 109.47121 * 150.02363 * 1 2 3 28 28 H 1.08005 * 126.82918 * 359.96283 * 3 2 1 29 29 H 1.09000 * 109.62632 * 248.52755 * 8 7 5 30 30 H 1.09000 * 109.62437 * 9.10225 * 8 7 5 31 31 H 1.09001 * 109.64618 * 294.07920 * 9 8 7 32 32 H 1.08993 * 109.41993 * 173.94714 * 9 8 7 33 33 H 1.08994 * 109.46893 * 54.30661 * 11 10 9 34 34 H 1.09005 * 109.46505 * 174.30273 * 11 10 9 35 35 H 0.97001 * 120.00394 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.49478 * 303.14232 * 20 10 9 37 37 H 1.09004 * 109.51623 * 183.07724 * 20 10 9 38 38 H 1.09000 * 109.62835 * 350.89598 * 21 7 5 39 39 H 1.09000 * 109.62705 * 111.47590 * 21 7 5 40 40 H 1.07997 * 125.79503 * 179.86751 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6105 0.0060 5 6 4.8978 1.4301 0.0144 6 8 5.9330 0.9820 -0.4402 7 7 4.8702 2.6767 0.5257 8 6 3.6677 3.1900 1.1995 9 6 4.0849 3.7532 2.5673 10 7 5.1586 4.7379 2.3787 11 6 5.4668 5.4283 3.6383 12 6 4.2807 6.2566 4.0604 13 1 3.3871 6.2686 3.4539 14 6 4.3363 6.9991 5.2208 15 7 5.4242 6.9841 5.9595 16 14 2.8658 8.0252 5.7444 17 1 1.6895 7.1405 5.9407 18 1 3.1775 8.7232 7.0176 19 1 2.5614 9.0273 4.6917 20 6 6.3615 4.1129 1.8129 21 6 6.0398 3.5622 0.4196 22 6 3.5998 -0.7552 0.0000 23 7 2.3007 -1.1099 0.0000 24 1 1.9757 -2.0238 0.0000 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.9629 2.1234 -0.0006 29 1 3.2189 3.9793 0.5964 30 1 2.9520 2.3798 1.3385 31 1 4.4417 2.9434 3.2037 32 1 3.2278 4.2352 3.0374 33 1 5.6896 4.6925 4.4108 34 1 6.3307 6.0774 3.4947 35 1 5.4635 7.5067 6.7758 36 1 6.6867 3.2981 2.4599 37 1 7.1559 4.8554 1.7361 38 1 6.8931 2.9983 0.0428 39 1 5.8146 4.3867 -0.2569 40 1 4.4400 -1.4337 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188191463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:47 Heat of formation + Delta-G solvation = 1.127370 kcal Electronic energy + Delta-G solvation = -21551.997818 eV Core-core repulsion = 18366.721114 eV Total energy + Delta-G solvation = -3185.276704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24196 -40.67013 -38.79148 -35.94163 -34.41643 -32.79547 -32.51909 -31.39100 -29.94179 -27.55265 -26.83952 -24.85725 -24.36886 -23.10092 -21.40820 -21.35063 -19.35559 -18.65584 -18.46932 -17.37589 -16.69465 -16.60283 -16.32795 -15.99680 -15.48366 -15.40574 -15.27003 -14.75930 -14.66583 -14.23921 -14.01550 -13.66432 -13.42146 -13.37054 -13.28493 -12.99842 -12.71010 -12.62740 -12.54943 -12.30696 -12.26313 -12.11102 -11.69684 -11.28568 -10.91209 -10.59375 -9.83638 -9.59935 -9.10462 -9.01728 -8.18241 -6.29037 0.82652 1.44774 1.45959 1.48372 1.56030 1.99052 2.40125 2.42396 2.48001 3.14161 3.25859 3.71937 3.99403 4.05304 4.09850 4.24032 4.28914 4.40002 4.42290 4.45937 4.58495 4.68779 4.75876 4.84886 4.87689 4.91214 4.96132 5.02816 5.14920 5.20395 5.21885 5.26201 5.53581 5.65435 5.81372 6.00420 6.03574 6.25396 6.50024 6.57416 6.69016 6.86414 7.22930 7.40977 8.93195 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.004351 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.248262 B = 6434.282766 C = 7521.366960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.023 3.977 3 C -0.193 4.193 4 C -0.263 4.263 5 C 0.585 3.415 6 O -0.599 6.599 7 N -0.607 5.607 8 C 0.113 3.887 9 C 0.052 3.948 10 N -0.537 5.537 11 C 0.207 3.793 12 C -0.522 4.522 13 H 0.070 0.930 14 C 0.001 3.999 15 N -0.938 5.938 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.267 1.267 20 C 0.044 3.956 21 C 0.127 3.873 22 C 0.075 3.925 23 N -0.535 5.535 24 H 0.434 0.566 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.008 0.992 32 H 0.087 0.913 33 H -0.043 1.043 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.011 0.989 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.794 -16.062 -12.544 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.216 4.216 4 C -0.273 4.273 5 C 0.377 3.623 6 O -0.482 6.482 7 N -0.339 5.339 8 C -0.009 4.009 9 C -0.077 4.077 10 N -0.261 5.261 11 C 0.081 3.919 12 C -0.560 4.560 13 H 0.089 0.911 14 C -0.197 4.197 15 N -0.578 5.578 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.085 4.085 21 C 0.004 3.996 22 C -0.063 4.063 23 N -0.131 5.131 24 H 0.274 0.726 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.026 0.974 32 H 0.106 0.894 33 H -0.026 1.026 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.437 -15.984 -12.952 23.538 hybrid contribution 0.463 -0.128 1.392 1.472 sum -10.974 -16.112 -11.560 22.664 Atomic orbital electron populations 1.20459 0.85112 1.04702 1.03867 1.20780 0.95047 0.85495 1.07450 1.22165 0.89987 0.99205 1.10236 1.20307 0.92827 0.93997 1.20136 1.17947 0.87613 0.80534 0.76157 1.90688 1.34353 1.72509 1.50666 1.48058 1.15761 1.13522 1.56513 1.22549 0.86926 1.00009 0.91457 1.22468 0.96097 0.92655 0.96501 1.62042 1.07545 1.27750 1.28792 1.19395 0.96379 0.91761 0.84359 1.21423 1.00702 1.26917 1.06969 0.91139 1.25956 0.99246 0.98139 0.96385 1.70096 1.29647 1.42583 1.15503 0.85390 0.78947 0.78684 0.77323 1.18836 1.21258 1.19144 1.22427 0.93641 0.97048 0.95390 1.21613 0.88941 0.93080 0.95966 1.21888 0.87485 0.94892 1.02029 1.41562 1.04784 1.09761 1.57020 0.72598 0.89933 0.89248 0.89811 0.82518 0.89791 0.85893 0.97416 0.89450 1.02557 0.97686 0.92741 0.97070 0.89873 0.89338 0.89836 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.41 71.24 0.74 0.05 16 2 C 0.02 0.35 7.13 40.98 0.29 0.64 16 3 C -0.19 -4.12 8.53 23.62 0.20 -3.91 16 4 C -0.26 -7.04 5.74 -19.04 -0.11 -7.15 16 5 C 0.58 19.93 7.65 86.62 0.66 20.59 16 6 O -0.60 -23.84 16.46 -4.10 -0.07 -23.91 16 7 N -0.61 -20.23 3.00 -821.11 -2.47 -22.70 16 8 C 0.11 3.42 5.36 86.50 0.46 3.89 16 9 C 0.05 2.01 5.47 86.54 0.47 2.49 16 10 N -0.54 -23.70 4.62 -898.90 -4.15 -27.86 16 11 C 0.21 11.24 4.72 85.56 0.40 11.65 16 12 C -0.52 -29.20 8.41 25.60 0.22 -28.98 16 13 H 0.07 3.77 7.13 -2.91 -0.02 3.74 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.94 -56.74 13.29 21.44 0.28 -56.46 16 16 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.04 1.73 5.62 86.38 0.49 2.21 16 21 C 0.13 4.30 6.61 86.35 0.57 4.87 16 22 C 0.07 1.52 11.78 83.92 0.99 2.51 16 23 N -0.53 -7.25 5.90 -182.76 -1.08 -8.33 16 24 H 0.43 2.51 8.96 -92.71 -0.83 1.68 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.16 3.08 6.40 -2.91 -0.02 3.06 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.12 3.22 4.16 -2.39 -0.01 3.21 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.09 3.52 6.67 -2.39 -0.02 3.50 16 33 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 34 H 0.01 0.29 7.97 -2.38 -0.02 0.28 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 3.15 7.99 -2.38 -0.02 3.13 16 38 H 0.09 3.00 7.04 -2.39 -0.02 2.98 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -74.44 324.82 0.62 -73.82 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.22 Total: 10.60 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.85 Total: 9.35 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -7.41 Total: -115.34 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.07 Total: -23.91 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.44 0.62 -73.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188191463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.944 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds