Wall clock time and date at job start Mon Mar 30 2020 02:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35343 * 126.37750 * 2 1 4 4 C 1.41549 * 105.50210 * 179.97438 * 3 2 1 5 5 C 1.47613 * 126.52688 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99436 * 354.88768 * 5 4 3 7 7 N 1.34776 * 120.00074 * 174.88283 * 5 4 3 8 8 C 1.46503 * 119.99753 * 4.91022 * 7 5 4 9 9 C 1.36904 * 119.99891 * 184.91271 * 7 5 4 10 10 H 1.08004 * 120.00269 * 37.54785 * 9 7 5 11 11 C 1.39024 * 119.99950 * 217.54963 * 9 7 5 12 12 N 1.31377 * 119.99685 * 9.36242 * 11 9 7 13 13 Si 1.86800 * 119.99871 * 189.35959 * 11 9 7 14 14 H 1.48492 * 109.47308 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46834 * 120.00292 * 13 11 9 16 16 H 1.48500 * 109.47111 * 240.00163 * 13 11 9 17 17 N 1.31865 * 106.95102 * 359.78191 * 4 3 2 18 18 N 1.28469 * 110.06061 * 0.36700 * 17 4 3 19 19 C 1.46505 * 124.87770 * 179.88362 * 18 17 4 20 20 C 1.52999 * 109.47184 * 269.69619 * 19 18 17 21 21 C 1.53782 * 113.61492 * 272.49653 * 20 19 18 22 22 C 1.53776 * 87.07971 * 220.02345 * 21 20 19 23 23 C 1.53775 * 87.08424 * 25.43331 * 22 21 20 24 24 H 1.09003 * 109.46974 * 270.02277 * 1 2 3 25 25 H 1.08998 * 109.47009 * 30.03124 * 1 2 3 26 26 H 1.09005 * 109.46909 * 150.02645 * 1 2 3 27 27 H 1.07998 * 127.25266 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47292 * 58.24625 * 8 7 5 29 29 H 1.08997 * 109.46829 * 178.24390 * 8 7 5 30 30 H 1.08998 * 109.47344 * 298.24350 * 8 7 5 31 31 H 0.97001 * 119.99437 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.46912 * 149.69314 * 19 18 17 33 33 H 1.09000 * 109.46789 * 29.70121 * 19 18 17 34 34 H 1.08998 * 112.90934 * 43.74930 * 20 19 18 35 35 H 1.09005 * 113.61396 * 334.56891 * 21 20 19 36 36 H 1.08994 * 113.61091 * 105.46940 * 21 20 19 37 37 H 1.09004 * 113.61166 * 270.88104 * 22 21 20 38 38 H 1.09003 * 113.61609 * 139.98437 * 22 21 20 39 39 H 1.09002 * 113.61514 * 220.01918 * 23 22 21 40 40 H 1.08995 * 113.69240 * 89.12754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6324 0.5853 0.0006 5 6 4.8760 1.3805 0.0003 6 8 4.8230 2.5918 -0.0944 7 7 6.0700 0.7643 0.1051 8 6 6.1410 -0.6990 0.1109 9 6 7.2164 1.5057 0.2061 10 1 7.2187 2.4214 0.7788 11 6 8.3778 1.0799 -0.4285 12 7 8.3343 0.0731 -1.2714 13 14 9.9998 1.9395 -0.0828 14 1 9.7813 3.0338 0.8968 15 1 10.9687 0.9622 0.4754 16 1 10.5392 2.5052 -1.3454 17 7 3.5421 -0.7303 0.0057 18 7 2.3081 -1.0873 0.0006 19 6 1.8374 -2.4747 0.0015 20 6 1.6732 -2.9585 -1.4406 21 6 0.2927 -2.6463 -2.0418 22 6 0.3473 -4.0395 -2.6905 23 6 1.2983 -4.4458 -1.5524 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 2.0054 2.1259 -0.0004 28 1 5.6970 -1.0880 -0.8054 29 1 7.1834 -1.0119 0.1708 30 1 5.5955 -1.0859 0.9716 31 1 9.1446 -0.2237 -1.7145 32 1 0.8779 -2.5325 0.5157 33 1 2.5635 -3.1043 0.5157 34 1 2.5048 -2.6684 -2.0828 35 1 -0.4952 -2.5427 -1.2957 36 1 0.3050 -1.8284 -2.7621 37 1 0.8164 -4.0448 -3.6745 38 1 -0.6062 -4.5674 -2.6723 39 1 2.1225 -5.0806 -1.8778 40 1 0.7867 -4.8345 -0.6720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199580425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:25 Heat of formation + Delta-G solvation = 72.188512 kcal Electronic energy + Delta-G solvation = -21786.980749 eV Core-core repulsion = 18604.785488 eV Total energy + Delta-G solvation = -3182.195262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12944 -39.06656 -37.88087 -34.49577 -33.04386 -32.33726 -31.41037 -28.24581 -26.89910 -25.90617 -25.83400 -24.79283 -23.40171 -21.78377 -20.09710 -19.72273 -18.43755 -16.70783 -16.55763 -16.01561 -15.64577 -15.48249 -14.75662 -14.36030 -14.01547 -13.84490 -13.53211 -13.22139 -12.91902 -12.80966 -12.62847 -12.47257 -12.19389 -11.92586 -11.63284 -11.55756 -11.30956 -11.16501 -10.88440 -10.79877 -10.63244 -10.47105 -10.35060 -10.26472 -9.81362 -8.85148 -8.49251 -8.39038 -8.37443 -7.34056 -6.23725 -3.89124 2.33686 2.79803 2.88184 3.25442 3.31273 3.38264 4.21195 4.25117 4.38412 4.42425 4.55824 4.61289 4.78796 4.87137 5.04741 5.08753 5.19636 5.27851 5.29541 5.41184 5.45963 5.53060 5.57406 5.64927 5.67944 5.76999 5.84014 5.95213 6.12329 6.23815 6.31718 6.45311 6.86509 7.00697 7.08070 7.28737 7.45523 7.63303 8.35335 8.52760 8.72258 9.28285 9.49604 10.14281 10.81276 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.004526 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.436565 B = 6184.800781 C = 7004.706658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.002 4.002 3 C -0.191 4.191 4 C 0.019 3.981 5 C 0.526 3.474 6 O -0.581 6.581 7 N -0.427 5.427 8 C 0.112 3.888 9 C -0.304 4.304 10 H 0.093 0.907 11 C 0.035 3.965 12 N -0.874 5.874 13 Si 0.926 3.074 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.281 1.281 17 N -0.264 5.264 18 N -0.293 5.293 19 C 0.133 3.867 20 C -0.128 4.128 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.267 0.733 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.671 -10.993 0.484 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.219 4.219 4 C -0.142 4.142 5 C 0.313 3.687 6 O -0.464 6.464 7 N -0.145 5.145 8 C -0.032 4.032 9 C -0.433 4.433 10 H 0.110 0.890 11 C -0.170 4.170 12 N -0.512 5.512 13 Si 0.752 3.248 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.207 1.207 17 N -0.098 5.098 18 N -0.081 5.081 19 C 0.012 3.988 20 C -0.147 4.147 21 C -0.177 4.177 22 C -0.178 4.178 23 C -0.169 4.169 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.918 -11.613 0.338 19.707 hybrid contribution 0.369 0.887 -0.034 0.961 sum -15.549 -10.727 0.304 18.892 Atomic orbital electron populations 1.20382 0.87814 1.03493 1.02529 1.21181 0.94710 0.87248 1.09472 1.21459 0.91259 0.98931 1.10287 1.22513 0.95910 0.89247 1.06502 1.17052 0.81834 0.86562 0.83243 1.90599 1.86285 1.13472 1.56040 1.43340 1.04434 1.05929 1.60804 1.21537 1.02348 0.80840 0.98429 1.19593 0.86081 1.07730 1.29862 0.88973 1.25505 1.00251 0.96812 0.94383 1.69938 1.28994 1.26579 1.25665 0.85874 0.81155 0.79296 0.78429 1.19098 1.20679 1.20652 1.73985 1.00082 1.15419 1.20280 1.45494 1.03290 1.06315 1.53004 1.21877 1.00776 0.78332 0.97820 1.23012 0.99014 0.96899 0.95776 1.23093 0.96537 0.97766 1.00292 1.22783 0.99820 0.96844 0.98344 1.22890 0.99694 0.95169 0.99132 0.91152 0.90152 0.91266 0.82997 0.93701 0.89772 0.95385 0.92285 0.88912 0.88282 0.88009 0.89801 0.91178 0.90065 0.91328 0.90913 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.86 36.01 0.35 -0.49 16 2 C 0.00 -0.04 6.92 -82.20 -0.57 -0.60 16 3 C -0.19 -3.74 10.73 -39.35 -0.42 -4.16 16 4 C 0.02 0.45 6.89 -82.77 -0.57 -0.12 16 5 C 0.53 14.76 7.62 -12.43 -0.09 14.67 16 6 O -0.58 -17.82 16.83 5.27 0.09 -17.73 16 7 N -0.43 -12.16 2.94 -123.36 -0.36 -12.52 16 8 C 0.11 2.84 7.97 59.85 0.48 3.32 16 9 C -0.30 -9.00 8.93 -15.00 -0.13 -9.13 16 10 H 0.09 2.78 7.75 -52.48 -0.41 2.38 16 11 C 0.03 0.97 5.03 -17.45 -0.09 0.88 16 12 N -0.87 -24.77 11.23 55.50 0.62 -24.14 16 13 Si 0.93 21.45 29.56 -169.99 -5.03 16.42 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 N -0.26 -5.44 8.63 33.42 0.29 -5.15 16 18 N -0.29 -4.70 3.30 -57.10 -0.19 -4.89 16 19 C 0.13 1.47 5.74 -4.04 -0.02 1.45 16 20 C -0.13 -1.30 3.96 -89.81 -0.36 -1.65 16 21 C -0.14 -1.18 6.46 -25.92 -0.17 -1.34 16 22 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 23 C -0.13 -1.00 7.64 -25.92 -0.20 -1.20 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.56 4.69 -51.93 -0.24 0.32 16 27 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 28 H 0.04 1.13 7.36 -51.93 -0.38 0.75 16 29 H 0.08 2.21 6.02 -51.93 -0.31 1.90 16 30 H 0.03 0.65 7.24 -51.93 -0.38 0.27 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.09 0.76 7.26 -51.93 -0.38 0.39 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 0.58 6.42 -51.93 -0.33 0.25 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -34.81 326.00 -7.45 -42.26 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.79 Total: 0.49 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.00 Total: 0.34 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.36 Total: -46.70 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.09 Total: -17.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.81 -7.45 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199580425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.452 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds