Wall clock time and date at job start Mon Mar 30 2020 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35343 * 126.37750 * 2 1 4 4 C 1.41549 * 105.50210 * 179.97438 * 3 2 1 5 5 C 1.47613 * 126.52688 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99436 * 354.88768 * 5 4 3 7 7 N 1.34776 * 120.00074 * 174.88283 * 5 4 3 8 8 C 1.46503 * 119.99753 * 4.91022 * 7 5 4 9 9 C 1.36904 * 119.99891 * 184.91271 * 7 5 4 10 10 H 1.08004 * 120.00269 * 37.54785 * 9 7 5 11 11 C 1.39024 * 119.99950 * 217.54963 * 9 7 5 12 12 N 1.31377 * 119.99685 * 9.36242 * 11 9 7 13 13 Si 1.86800 * 119.99871 * 189.35959 * 11 9 7 14 14 H 1.48492 * 109.47308 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46834 * 120.00292 * 13 11 9 16 16 H 1.48500 * 109.47111 * 240.00163 * 13 11 9 17 17 N 1.31865 * 106.95102 * 359.78191 * 4 3 2 18 18 N 1.28469 * 110.06061 * 0.36700 * 17 4 3 19 19 C 1.46505 * 124.87770 * 179.88362 * 18 17 4 20 20 C 1.52999 * 109.47184 * 269.69619 * 19 18 17 21 21 C 1.53782 * 113.61492 * 272.49653 * 20 19 18 22 22 C 1.53776 * 87.07971 * 220.02345 * 21 20 19 23 23 C 1.53775 * 87.08424 * 25.43331 * 22 21 20 24 24 H 1.09003 * 109.46974 * 270.02277 * 1 2 3 25 25 H 1.08998 * 109.47009 * 30.03124 * 1 2 3 26 26 H 1.09005 * 109.46909 * 150.02645 * 1 2 3 27 27 H 1.07998 * 127.25266 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47292 * 58.24625 * 8 7 5 29 29 H 1.08997 * 109.46829 * 178.24390 * 8 7 5 30 30 H 1.08998 * 109.47344 * 298.24350 * 8 7 5 31 31 H 0.97001 * 119.99437 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.46912 * 149.69314 * 19 18 17 33 33 H 1.09000 * 109.46789 * 29.70121 * 19 18 17 34 34 H 1.08998 * 112.90934 * 43.74930 * 20 19 18 35 35 H 1.09005 * 113.61396 * 334.56891 * 21 20 19 36 36 H 1.08994 * 113.61091 * 105.46940 * 21 20 19 37 37 H 1.09004 * 113.61166 * 270.88104 * 22 21 20 38 38 H 1.09003 * 113.61609 * 139.98437 * 22 21 20 39 39 H 1.09002 * 113.61514 * 220.01918 * 23 22 21 40 40 H 1.08995 * 113.69240 * 89.12754 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6324 0.5853 0.0006 5 6 4.8760 1.3805 0.0003 6 8 4.8230 2.5918 -0.0944 7 7 6.0700 0.7643 0.1051 8 6 6.1410 -0.6990 0.1109 9 6 7.2164 1.5057 0.2061 10 1 7.2187 2.4214 0.7788 11 6 8.3778 1.0799 -0.4285 12 7 8.3343 0.0731 -1.2714 13 14 9.9998 1.9395 -0.0828 14 1 9.7813 3.0338 0.8968 15 1 10.9687 0.9622 0.4754 16 1 10.5392 2.5052 -1.3454 17 7 3.5421 -0.7303 0.0057 18 7 2.3081 -1.0873 0.0006 19 6 1.8374 -2.4747 0.0015 20 6 1.6732 -2.9585 -1.4406 21 6 0.2927 -2.6463 -2.0418 22 6 0.3473 -4.0395 -2.6905 23 6 1.2983 -4.4458 -1.5524 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 2.0054 2.1259 -0.0004 28 1 5.6970 -1.0880 -0.8054 29 1 7.1834 -1.0119 0.1708 30 1 5.5955 -1.0859 0.9716 31 1 9.1446 -0.2237 -1.7145 32 1 0.8779 -2.5325 0.5157 33 1 2.5635 -3.1043 0.5157 34 1 2.5048 -2.6684 -2.0828 35 1 -0.4952 -2.5427 -1.2957 36 1 0.3050 -1.8284 -2.7621 37 1 0.8164 -4.0448 -3.6745 38 1 -0.6062 -4.5674 -2.6723 39 1 2.1225 -5.0806 -1.8778 40 1 0.7867 -4.8345 -0.6720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199580425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:24 Heat of formation + Delta-G solvation = 49.759196 kcal Electronic energy + Delta-G solvation = -21787.953358 eV Core-core repulsion = 18604.785488 eV Total energy + Delta-G solvation = -3183.167870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.56125 -40.16174 -39.64270 -36.68970 -34.41232 -33.68870 -33.33291 -29.49651 -28.42404 -27.59827 -26.75722 -26.45476 -24.64953 -23.27686 -21.54174 -20.48000 -20.14506 -18.88020 -17.83430 -17.42682 -17.20596 -16.71787 -16.38150 -15.92911 -15.77903 -15.03602 -14.99812 -14.57488 -14.07780 -13.97093 -13.78567 -13.63736 -13.41571 -13.36136 -13.21590 -13.08773 -12.78781 -12.71462 -12.47969 -12.41438 -12.09668 -11.63628 -11.46886 -11.31887 -11.14569 -10.96968 -10.68337 -9.89175 -9.77151 -9.52000 -8.38806 -6.15590 0.77566 1.23299 1.39238 1.43787 1.55721 1.69122 2.27087 2.55818 3.02832 3.11551 3.44555 3.67560 3.69304 3.71985 3.89075 3.96160 4.14159 4.19429 4.42897 4.47770 4.57454 4.75899 4.81198 4.83483 4.85549 4.86754 4.91453 4.92930 5.09921 5.10686 5.11738 5.14524 5.26731 5.30565 5.38940 5.49144 5.58080 6.06411 6.17489 6.47183 7.01805 7.16386 7.34331 7.97547 8.66401 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.004526 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.436565 B = 6184.800781 C = 7004.706658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.029 3.971 3 C -0.221 4.221 4 C -0.026 4.026 5 C 0.513 3.487 6 O -0.625 6.625 7 N -0.444 5.444 8 C 0.135 3.865 9 C -0.348 4.348 10 H 0.072 0.928 11 C -0.001 4.001 12 N -0.896 5.896 13 Si 0.999 3.001 14 H -0.268 1.268 15 H -0.260 1.260 16 H -0.274 1.274 17 N -0.278 5.278 18 N -0.279 5.279 19 C 0.121 3.879 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.120 4.120 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.276 0.724 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 -13.116 0.977 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.250 4.250 4 C -0.185 4.185 5 C 0.302 3.698 6 O -0.511 6.511 7 N -0.161 5.161 8 C -0.009 4.009 9 C -0.476 4.476 10 H 0.089 0.911 11 C -0.203 4.203 12 N -0.534 5.534 13 Si 0.821 3.179 14 H -0.192 1.192 15 H -0.184 1.184 16 H -0.199 1.199 17 N -0.114 5.114 18 N -0.067 5.067 19 C 0.003 3.997 20 C -0.156 4.156 21 C -0.173 4.173 22 C -0.175 4.175 23 C -0.158 4.158 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.169 0.831 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.215 -13.787 0.826 22.860 hybrid contribution 0.946 1.423 -0.232 1.725 sum -17.269 -12.364 0.593 21.247 Atomic orbital electron populations 1.20641 0.83055 1.05482 1.04818 1.21864 0.97037 0.85400 1.05310 1.21616 0.90440 1.00398 1.12532 1.21962 0.95237 0.90466 1.10797 1.17741 0.83298 0.86677 0.82083 1.90521 1.87361 1.15419 1.57843 1.43602 1.04588 1.06901 1.61035 1.21339 1.01448 0.79406 0.98686 1.19677 0.87737 1.08299 1.31914 0.91063 1.26411 1.03361 0.97230 0.93332 1.70014 1.30504 1.27203 1.25631 0.84812 0.76302 0.78381 0.78389 1.19225 1.18436 1.19938 1.73821 1.02864 1.14109 1.20605 1.46019 1.02066 1.08511 1.50108 1.22468 1.02769 0.75433 0.99070 1.22963 0.98933 0.99291 0.94424 1.23163 0.95775 0.97789 1.00548 1.22761 1.00630 0.96437 0.97680 1.22913 0.99639 0.93005 1.00236 0.88475 0.88972 0.88531 0.83134 0.94436 0.91076 0.93736 0.91421 0.84454 0.88060 0.91994 0.86945 0.92684 0.91225 0.89227 0.91572 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.86 71.24 0.70 -0.57 16 2 C 0.03 0.85 6.92 41.40 0.29 1.13 16 3 C -0.22 -8.81 10.73 22.42 0.24 -8.57 16 4 C -0.03 -1.27 6.89 42.43 0.29 -0.98 16 5 C 0.51 30.64 7.62 86.72 0.66 31.30 16 6 O -0.63 -41.05 16.83 -4.05 -0.07 -41.12 16 7 N -0.44 -26.67 2.94 -662.45 -1.95 -28.62 16 8 C 0.13 7.09 7.97 127.77 1.02 8.11 16 9 C -0.35 -21.68 8.93 84.09 0.75 -20.92 16 10 H 0.07 4.60 7.75 -2.91 -0.02 4.58 16 11 C 0.00 -0.06 5.03 84.95 0.43 0.36 16 12 N -0.90 -51.80 11.23 21.68 0.24 -51.56 16 13 Si 1.00 44.65 29.56 68.60 2.03 46.68 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 N -0.28 -11.66 8.63 -48.19 -0.42 -12.07 16 18 N -0.28 -8.51 3.30 -334.58 -1.10 -9.61 16 19 C 0.12 2.30 5.74 86.38 0.50 2.79 16 20 C -0.14 -2.47 3.96 -10.27 -0.04 -2.52 16 21 C -0.14 -1.80 6.46 31.12 0.20 -1.60 16 22 C -0.14 -1.62 8.08 31.12 0.25 -1.37 16 23 C -0.12 -1.46 7.64 31.12 0.24 -1.22 16 24 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 1.00 4.69 -2.38 -0.01 0.99 16 27 H 0.15 5.82 8.06 -2.91 -0.02 5.80 16 28 H 0.04 1.98 7.36 -2.39 -0.02 1.96 16 29 H 0.07 3.88 6.02 -2.39 -0.01 3.86 16 30 H 0.04 2.14 7.24 -2.39 -0.02 2.12 16 31 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.14 1.45 7.26 -2.38 -0.02 1.43 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 0.87 6.42 -2.38 -0.02 0.85 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 0.80 8.10 -2.39 -0.02 0.79 16 Total: -1.00 -82.42 326.00 5.30 -77.12 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.04 Total: 13.24 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.53 Total: 5.94 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -3.22 Total: -101.86 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.07 Total: -41.12 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -82.42 5.30 -77.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199580425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.878 kcal (2) G-P(sol) polarization free energy of solvation -82.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds