Wall clock time and date at job start Mon Mar 30 2020 01:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38598 * 120.44590 * 2 1 4 4 C 1.38596 * 118.39815 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.44808 * 179.97438 * 4 3 2 6 6 N 1.32338 * 119.10497 * 0.02562 * 4 3 2 7 7 C 1.31791 * 120.81826 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.12483 * 179.97438 * 7 6 4 9 9 O 1.42896 * 109.47602 * 89.99563 * 8 7 6 10 10 C 1.42901 * 114.00371 * 180.02562 * 9 8 7 11 11 C 1.53507 * 114.17322 * 149.99613 * 10 9 8 12 12 N 1.47489 * 87.92897 * 87.62477 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 N 1.31802 * 121.75687 * 0.24974 * 7 6 4 24 24 H 1.09008 * 109.46993 * 89.99823 * 1 2 3 25 25 H 1.08997 * 109.46907 * 209.99116 * 1 2 3 26 26 H 1.08995 * 109.47327 * 329.99627 * 1 2 3 27 27 H 1.07997 * 120.79959 * 0.05009 * 3 2 1 28 28 H 1.08996 * 109.47352 * 270.02410 * 5 4 3 29 29 H 1.09002 * 109.47124 * 30.02560 * 5 4 3 30 30 H 1.09006 * 109.47119 * 150.01905 * 5 4 3 31 31 H 1.09003 * 109.46640 * 329.99532 * 8 7 6 32 32 H 1.08998 * 109.47028 * 210.00004 * 8 7 6 33 33 H 1.09007 * 113.37857 * 16.91935 * 10 9 8 34 34 H 1.08997 * 113.47543 * 332.86286 * 11 10 9 35 35 H 1.08997 * 113.47777 * 202.38362 * 11 10 9 36 36 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 37 37 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 40 40 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1949 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4164 -0.0012 6 7 4.1964 -0.0332 -0.0016 7 6 3.4956 -1.1493 -0.0026 8 6 4.2204 -2.4705 -0.0043 9 8 4.4502 -2.8897 1.3424 10 6 5.1359 -4.1385 1.4535 11 6 6.0057 -4.2681 2.7118 12 7 4.8133 -4.7712 3.4191 13 6 5.1583 -5.8969 4.2977 14 6 3.9816 -6.2238 5.1806 15 1 3.0687 -5.6529 5.0972 16 6 4.0702 -7.2527 6.0943 17 7 3.0432 -7.5384 6.8645 18 14 5.6490 -8.2407 6.2381 19 1 5.5936 -9.4000 5.3117 20 1 6.8059 -7.3794 5.8846 21 1 5.8025 -8.7282 7.6324 22 6 4.3125 -5.2509 2.1175 23 7 2.1776 -1.1409 -0.0075 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5139 27 1 1.6898 2.1417 0.0008 28 1 4.5985 2.7229 -1.0289 29 1 3.8490 3.2010 0.5131 30 1 5.3503 2.2447 0.5121 31 1 5.1753 -2.3603 -0.5184 32 1 3.6148 -3.2166 -0.5187 33 1 5.6348 -4.4414 0.5329 34 1 6.3647 -3.3118 3.0919 35 1 6.7990 -5.0095 2.6167 36 1 6.0131 -5.6256 4.9173 37 1 5.4105 -6.7669 3.6914 38 1 3.1054 -8.2624 7.5070 39 1 4.6540 -6.2543 1.8639 40 1 3.2365 -5.1273 1.9941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223341852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:54 Heat of formation + Delta-G solvation = 46.614398 kcal Electronic energy + Delta-G solvation = -20676.348537 eV Core-core repulsion = 17493.044298 eV Total energy + Delta-G solvation = -3183.304239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30297 -39.63224 -36.68766 -34.98458 -33.71080 -32.66234 -29.78430 -29.59501 -28.14176 -27.31435 -25.47802 -25.13476 -22.35715 -21.94218 -21.29094 -19.51224 -17.93026 -16.82630 -16.67722 -16.09802 -15.71492 -15.35078 -15.08621 -14.84580 -14.29083 -13.83929 -13.74540 -13.63909 -13.37331 -13.16376 -12.82612 -12.70427 -12.40179 -12.38515 -12.16002 -12.11598 -11.40358 -11.19063 -10.91484 -10.72053 -10.45559 -10.42755 -9.94557 -9.74254 -9.55472 -9.37834 -9.29257 -9.22307 -8.53338 -7.86535 -6.00156 -3.96966 0.64990 0.91365 3.15212 3.29368 3.37119 3.38842 3.66276 3.82168 4.10005 4.20837 4.45009 4.71053 4.78587 4.81956 4.88255 5.03117 5.10584 5.19997 5.20536 5.25713 5.27362 5.28826 5.30666 5.37278 5.60492 5.70525 5.74939 5.76114 5.87846 6.08764 6.19012 6.25290 6.33890 6.58776 6.74554 6.90808 7.36639 7.40068 7.75991 7.92958 7.98951 8.70071 9.12148 9.61094 11.13474 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.003270 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.217899 B = 8560.480403 C = 9043.166919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.177 3.823 3 C -0.230 4.230 4 C 0.174 3.826 5 C -0.105 4.105 6 N -0.509 5.509 7 C 0.336 3.664 8 C 0.130 3.870 9 O -0.339 6.339 10 C 0.058 3.942 11 C -0.010 4.010 12 N -0.444 5.444 13 C 0.125 3.875 14 C -0.503 4.503 15 H 0.080 0.920 16 C 0.066 3.934 17 N -0.901 5.901 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.268 1.268 21 H -0.285 1.285 22 C -0.009 4.009 23 N -0.505 5.505 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.027 0.973 37 H -0.005 1.005 38 H 0.263 0.737 39 H 0.072 0.928 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 17.782 -19.184 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.031 3.969 3 C -0.252 4.252 4 C 0.029 3.971 5 C -0.163 4.163 6 N -0.226 5.226 7 C 0.068 3.932 8 C 0.052 3.948 9 O -0.256 6.256 10 C 0.000 4.000 11 C -0.139 4.139 12 N -0.167 5.167 13 C -0.002 4.002 14 C -0.542 4.542 15 H 0.098 0.902 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.211 1.211 22 C -0.138 4.138 23 N -0.222 5.222 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.164 0.836 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.967 17.317 -18.404 25.289 hybrid contribution 0.883 -0.631 -0.290 1.124 sum 1.850 16.686 -18.695 25.126 Atomic orbital electron populations 1.20800 0.87624 1.04433 1.03581 1.21793 0.97746 0.87971 0.89344 1.22598 0.95709 1.00536 1.06338 1.21756 0.91587 0.94099 0.89705 1.20778 1.00329 0.91631 1.03531 1.68055 1.41793 0.98292 1.14451 1.22681 0.86418 0.93584 0.90557 1.20976 0.98175 0.89283 0.86397 1.88043 1.77521 1.37136 1.22933 1.23292 0.94576 0.84767 0.97401 1.24099 0.94989 1.01458 0.93369 1.69014 1.14159 1.26611 1.06877 1.20765 0.98059 0.87989 0.93416 1.20988 0.99624 1.15932 1.17638 0.90175 1.24940 0.96150 0.96976 0.95467 1.69905 1.30175 1.30661 1.23312 0.86853 0.84635 0.80686 0.77523 1.20321 1.19263 1.21099 1.24266 1.01981 0.96017 0.91556 1.68092 1.09533 1.30491 1.14035 0.89712 0.89494 0.90078 0.83585 0.89763 0.90102 0.89727 0.90711 0.90503 0.90513 0.89774 0.91110 0.95487 0.98714 0.92717 0.91040 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.22 36.01 0.37 -0.48 16 2 C 0.18 2.06 6.82 -82.24 -0.56 1.50 16 3 C -0.23 -2.25 9.54 -39.32 -0.38 -2.62 16 4 C 0.17 1.93 6.82 -82.24 -0.56 1.37 16 5 C -0.11 -0.74 10.22 36.01 0.37 -0.37 16 6 N -0.51 -7.15 10.27 -6.99 -0.07 -7.23 16 7 C 0.34 5.01 7.27 -157.19 -1.14 3.87 16 8 C 0.13 1.81 6.21 36.00 0.22 2.03 16 9 O -0.34 -5.94 10.38 -35.23 -0.37 -6.31 16 10 C 0.06 0.94 4.65 -26.20 -0.12 0.81 16 11 C -0.01 -0.17 7.52 -7.54 -0.06 -0.23 16 12 N -0.44 -10.18 6.32 -246.10 -1.55 -11.74 16 13 C 0.12 3.19 3.64 -4.98 -0.02 3.17 16 14 C -0.50 -15.20 9.94 -34.44 -0.34 -15.55 16 15 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -28.60 13.96 55.43 0.77 -27.83 16 18 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.01 -0.17 7.55 -7.54 -0.06 -0.22 16 23 N -0.51 -7.44 10.27 -6.99 -0.07 -7.51 16 24 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 36 H 0.03 0.70 7.14 -51.93 -0.37 0.32 16 37 H 0.00 -0.12 6.73 -51.93 -0.35 -0.47 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.07 1.28 7.42 -51.93 -0.39 0.90 16 40 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -36.50 338.14 -9.40 -45.89 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.16 Total: -2.89 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.37 Total: -4.85 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.92 Total: -54.30 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.37 Total: -6.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.50 -9.40 -45.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223341852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.508 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds