Wall clock time and date at job start Mon Mar 30 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38598 * 120.44590 * 2 1 4 4 C 1.38596 * 118.39815 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.44808 * 179.97438 * 4 3 2 6 6 N 1.32338 * 119.10497 * 0.02562 * 4 3 2 7 7 C 1.31791 * 120.81826 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.12483 * 179.97438 * 7 6 4 9 9 O 1.42896 * 109.47602 * 89.99563 * 8 7 6 10 10 C 1.42901 * 114.00371 * 180.02562 * 9 8 7 11 11 C 1.53507 * 114.17322 * 149.99613 * 10 9 8 12 12 N 1.47489 * 87.92897 * 87.62477 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 N 1.31802 * 121.75687 * 0.24974 * 7 6 4 24 24 H 1.09008 * 109.46993 * 89.99823 * 1 2 3 25 25 H 1.08997 * 109.46907 * 209.99116 * 1 2 3 26 26 H 1.08995 * 109.47327 * 329.99627 * 1 2 3 27 27 H 1.07997 * 120.79959 * 0.05009 * 3 2 1 28 28 H 1.08996 * 109.47352 * 270.02410 * 5 4 3 29 29 H 1.09002 * 109.47124 * 30.02560 * 5 4 3 30 30 H 1.09006 * 109.47119 * 150.01905 * 5 4 3 31 31 H 1.09003 * 109.46640 * 329.99532 * 8 7 6 32 32 H 1.08998 * 109.47028 * 210.00004 * 8 7 6 33 33 H 1.09007 * 113.37857 * 16.91935 * 10 9 8 34 34 H 1.08997 * 113.47543 * 332.86286 * 11 10 9 35 35 H 1.08997 * 113.47777 * 202.38362 * 11 10 9 36 36 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 37 37 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 40 40 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1949 0.0000 4 6 3.5944 1.1453 -0.0005 5 6 4.4040 2.4164 -0.0012 6 7 4.1964 -0.0332 -0.0016 7 6 3.4956 -1.1493 -0.0026 8 6 4.2204 -2.4705 -0.0043 9 8 4.4502 -2.8897 1.3424 10 6 5.1359 -4.1385 1.4535 11 6 6.0057 -4.2681 2.7118 12 7 4.8133 -4.7712 3.4191 13 6 5.1583 -5.8969 4.2977 14 6 3.9816 -6.2238 5.1806 15 1 3.0687 -5.6529 5.0972 16 6 4.0702 -7.2527 6.0943 17 7 3.0432 -7.5384 6.8645 18 14 5.6490 -8.2407 6.2381 19 1 5.5936 -9.4000 5.3117 20 1 6.8059 -7.3794 5.8846 21 1 5.8025 -8.7282 7.6324 22 6 4.3125 -5.2509 2.1175 23 7 2.1776 -1.1409 -0.0075 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5139 27 1 1.6898 2.1417 0.0008 28 1 4.5985 2.7229 -1.0289 29 1 3.8490 3.2010 0.5131 30 1 5.3503 2.2447 0.5121 31 1 5.1753 -2.3603 -0.5184 32 1 3.6148 -3.2166 -0.5187 33 1 5.6348 -4.4414 0.5329 34 1 6.3647 -3.3118 3.0919 35 1 6.7990 -5.0095 2.6167 36 1 6.0131 -5.6256 4.9173 37 1 5.4105 -6.7669 3.6914 38 1 3.1054 -8.2624 7.5070 39 1 4.6540 -6.2543 1.8639 40 1 3.2365 -5.1273 1.9941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223341852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:53 Heat of formation + Delta-G solvation = 17.648038 kcal Electronic energy + Delta-G solvation = -20677.604612 eV Core-core repulsion = 17493.044298 eV Total energy + Delta-G solvation = -3184.560314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18327 -41.09842 -37.99610 -35.80966 -35.01681 -34.48552 -31.65098 -30.34328 -29.05922 -28.19592 -27.15908 -26.74312 -23.34943 -23.17728 -22.72365 -20.94950 -18.98878 -18.81456 -18.02141 -17.24198 -16.75700 -16.47330 -16.34913 -16.17032 -15.88304 -15.32734 -14.83452 -14.68686 -14.46554 -14.33214 -14.08756 -13.73433 -13.53055 -13.39418 -13.28475 -13.10891 -12.99396 -12.81957 -12.31967 -12.13395 -11.80566 -11.77201 -11.52719 -11.48481 -11.30844 -10.81876 -10.52344 -10.38281 -10.30027 -9.54059 -8.31570 -6.36642 -0.23766 0.06529 1.31951 1.35939 1.47001 2.15824 2.32563 2.78162 2.99899 3.02337 3.03687 3.41576 3.44227 3.52063 3.95389 3.96579 4.05563 4.19119 4.29342 4.41044 4.43932 4.47450 4.48577 4.59758 4.64942 4.69355 4.72205 4.74938 4.75913 4.84316 4.93597 4.95284 4.96305 5.16915 5.47295 5.49285 5.73977 5.97310 6.06148 6.22386 6.59216 6.69017 7.07497 7.26763 8.86317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.003270 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.217899 B = 8560.480403 C = 9043.166919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.155 3.845 3 C -0.219 4.219 4 C 0.157 3.843 5 C -0.101 4.101 6 N -0.532 5.532 7 C 0.308 3.692 8 C 0.129 3.871 9 O -0.372 6.372 10 C 0.081 3.919 11 C -0.007 4.007 12 N -0.493 5.493 13 C 0.137 3.863 14 C -0.523 4.523 15 H 0.021 0.979 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.959 3.041 19 H -0.260 1.260 20 H -0.246 1.246 21 H -0.280 1.280 22 C -0.015 4.015 23 N -0.540 5.540 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.188 0.812 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.028 0.972 37 H 0.011 0.989 38 H 0.268 0.732 39 H 0.088 0.912 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 18.727 -20.928 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.010 3.990 3 C -0.240 4.240 4 C 0.012 3.988 5 C -0.158 4.158 6 N -0.249 5.249 7 C 0.039 3.961 8 C 0.052 3.948 9 O -0.290 6.290 10 C 0.022 3.978 11 C -0.136 4.136 12 N -0.215 5.215 13 C 0.010 3.990 14 C -0.561 4.561 15 H 0.040 0.960 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.781 3.219 19 H -0.185 1.185 20 H -0.170 1.170 21 H -0.206 1.206 22 C -0.145 4.145 23 N -0.258 5.258 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.205 0.795 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.017 18.296 -20.176 27.403 hybrid contribution 0.072 -0.763 0.238 0.803 sum 3.088 17.533 -19.938 26.730 Atomic orbital electron populations 1.20897 0.85400 1.04855 1.04870 1.22481 0.99387 0.88037 0.89084 1.23031 0.95358 1.01539 1.04071 1.22529 0.92888 0.94502 0.88900 1.20894 0.99651 0.90282 1.04944 1.68075 1.42404 0.99084 1.15380 1.22863 0.86855 0.94297 0.92043 1.21159 0.99456 0.89394 0.84833 1.87997 1.77849 1.37596 1.25563 1.23189 0.92767 0.83216 0.98602 1.24188 0.94322 1.01687 0.93391 1.68909 1.17574 1.26258 1.08796 1.20526 0.95537 0.89603 0.93382 1.21240 0.99547 1.15838 1.19515 0.96037 1.26037 1.00744 0.98181 0.94526 1.70084 1.33183 1.31692 1.24280 0.85546 0.79283 0.79050 0.78021 1.18492 1.16993 1.20551 1.24361 1.01122 0.98316 0.90661 1.68089 1.09862 1.32429 1.15388 0.87871 0.91267 0.87383 0.79491 0.87875 0.87528 0.90626 0.88434 0.89775 0.85524 0.90118 0.88306 0.95430 0.97093 0.92301 0.89360 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.22 71.24 0.73 -0.79 16 2 C 0.15 3.50 6.82 42.57 0.29 3.79 16 3 C -0.22 -3.85 9.54 22.44 0.21 -3.63 16 4 C 0.16 3.26 6.82 42.57 0.29 3.55 16 5 C -0.10 -1.18 10.22 71.24 0.73 -0.45 16 6 N -0.53 -14.78 10.27 -176.02 -1.81 -16.59 16 7 C 0.31 9.28 7.27 138.75 1.01 10.29 16 8 C 0.13 3.54 6.21 71.24 0.44 3.98 16 9 O -0.37 -13.01 10.38 -148.98 -1.55 -14.56 16 10 C 0.08 2.46 4.65 30.94 0.14 2.60 16 11 C -0.01 -0.24 7.52 83.57 0.63 0.39 16 12 N -0.49 -22.78 6.32 -932.93 -5.89 -28.67 16 13 C 0.14 6.97 3.64 85.55 0.31 7.28 16 14 C -0.52 -32.81 9.94 25.60 0.25 -32.56 16 15 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 16 C 0.00 0.11 5.47 84.66 0.46 0.57 16 17 N -0.95 -62.40 13.96 21.45 0.30 -62.10 16 18 Si 0.96 45.15 27.47 68.60 1.88 47.03 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 C -0.02 -0.58 7.55 83.58 0.63 0.05 16 23 N -0.54 -16.25 10.27 -176.01 -1.81 -18.06 16 24 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.11 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.68 8.10 -2.39 -0.02 0.67 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.13 2.63 7.88 -2.38 -0.02 2.61 16 34 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.10 2.84 7.91 -2.39 -0.02 2.82 16 36 H 0.03 1.38 7.14 -2.38 -0.02 1.36 16 37 H 0.01 0.53 6.73 -2.39 -0.02 0.52 16 38 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 39 H 0.09 3.05 7.42 -2.39 -0.02 3.03 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -85.01 338.14 -1.77 -86.78 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.96 Total: 11.09 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 6.14 Total: -4.93 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -9.21 Total: -125.41 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.55 Total: -14.56 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -85.01 -1.77 -86.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223341852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.426 kcal (2) G-P(sol) polarization free energy of solvation -85.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds