Wall clock time and date at job start Mon Mar 30 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38595 * 120.44593 * 2 1 4 4 C 1.38599 * 118.39713 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.44772 * 180.02562 * 4 3 2 6 6 N 1.32329 * 119.10325 * 0.02562 * 4 3 2 7 7 C 1.31793 * 120.82107 * 359.97438 * 6 4 3 8 8 C 1.50703 * 119.12139 * 179.97438 * 7 6 4 9 9 O 1.42904 * 109.46798 * 90.00409 * 8 7 6 10 10 C 1.42895 * 113.99762 * 179.97438 * 9 8 7 11 11 H 1.09004 * 110.88649 * 333.87839 * 10 9 8 12 12 C 1.55159 * 111.00472 * 209.99754 * 10 9 8 13 13 C 1.54320 * 102.94349 * 206.38766 * 12 10 9 14 14 N 1.47018 * 107.27210 * 22.19183 * 13 12 10 15 15 C 1.36945 * 125.64695 * 181.02594 * 14 13 12 16 16 H 1.08000 * 119.99441 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00031 * 0.02562 * 15 14 13 18 18 N 1.31619 * 120.00283 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46722 * 90.00437 * 19 17 15 21 21 H 1.48497 * 109.47157 * 210.00127 * 19 17 15 22 22 H 1.48494 * 109.47346 * 330.00290 * 19 17 15 23 23 C 1.47421 * 108.70379 * 1.28563 * 14 13 12 24 24 N 1.31792 * 121.75506 * 0.25737 * 7 6 4 25 25 H 1.09002 * 109.47030 * 89.99978 * 1 2 3 26 26 H 1.09005 * 109.47155 * 209.99852 * 1 2 3 27 27 H 1.09000 * 109.47351 * 330.00130 * 1 2 3 28 28 H 1.08006 * 120.80321 * 359.95592 * 3 2 1 29 29 H 1.09004 * 109.47325 * 269.98735 * 5 4 3 30 30 H 1.09003 * 109.47282 * 29.97937 * 5 4 3 31 31 H 1.08994 * 109.47191 * 149.98222 * 5 4 3 32 32 H 1.08993 * 109.47181 * 330.00426 * 8 7 6 33 33 H 1.09004 * 109.46946 * 210.00004 * 8 7 6 34 34 H 1.08996 * 110.71852 * 88.02268 * 12 10 9 35 35 H 1.08998 * 110.86977 * 324.82137 * 12 10 9 36 36 H 1.09010 * 109.88205 * 262.77471 * 13 12 10 37 37 H 1.09004 * 110.01290 * 141.68524 * 13 12 10 38 38 H 0.96998 * 120.00243 * 179.97438 * 18 17 15 39 39 H 1.08996 * 110.36244 * 94.48455 * 23 14 13 40 40 H 1.08997 * 110.36930 * 216.80538 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1948 0.0000 4 6 3.5944 1.1453 0.0005 5 6 4.4041 2.4163 0.0012 6 7 4.1963 -0.0332 0.0005 7 6 3.4955 -1.1493 0.0005 8 6 4.2204 -2.4706 -0.0001 9 8 4.4500 -2.8885 1.3470 10 6 5.1347 -4.1376 1.4593 11 1 4.9621 -4.7560 0.5784 12 6 4.7192 -4.8853 2.7538 13 6 5.9518 -5.7629 3.0570 14 7 7.1030 -5.1470 2.3810 15 6 8.3840 -5.6311 2.3857 16 1 9.1629 -5.1025 1.8564 17 6 8.6813 -6.8012 3.0709 18 7 7.7319 -7.4456 3.7156 19 14 10.4286 -7.4618 3.0768 20 1 11.1694 -6.8916 4.2306 21 1 10.3977 -8.9420 3.1911 22 1 11.1075 -7.0770 1.8135 23 6 6.6512 -3.9188 1.7024 24 7 2.1776 -1.1409 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6898 2.1417 -0.0007 29 1 4.5999 2.7229 -1.0264 30 1 3.8483 3.2009 0.5146 31 1 5.3495 2.2446 0.5156 32 1 5.1752 -2.3608 -0.5142 33 1 3.6147 -3.2171 -0.5139 34 1 3.8396 -5.5040 2.5763 35 1 4.5368 -4.1824 3.5667 36 1 5.7926 -6.7709 2.6738 37 1 6.1288 -5.7988 4.1320 38 1 7.9396 -8.2634 4.1941 39 1 6.8139 -3.0508 2.3412 40 1 7.1731 -3.7957 0.7535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223343244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:57 Heat of formation + Delta-G solvation = 25.926115 kcal Electronic energy + Delta-G solvation = -20903.277035 eV Core-core repulsion = 17719.075686 eV Total energy + Delta-G solvation = -3184.201350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28664 -38.30363 -35.99423 -34.98050 -33.71903 -32.08175 -29.59252 -29.26720 -28.22013 -27.49132 -26.64066 -24.24696 -22.28354 -21.93388 -20.29126 -20.00760 -17.91112 -16.95821 -16.71375 -15.99326 -15.52982 -15.27950 -14.66107 -14.57046 -14.09683 -13.75944 -13.75125 -13.36926 -13.28816 -12.84405 -12.69802 -12.41423 -12.36794 -12.16952 -11.88301 -11.50608 -10.99216 -10.92668 -10.86057 -10.70194 -10.42643 -10.17001 -10.06349 -9.77459 -9.67489 -9.54044 -9.36068 -9.05742 -8.55646 -6.79131 -5.67004 -3.00843 0.66920 0.92092 3.26315 3.43628 3.48215 3.50339 3.68313 3.83946 4.14085 4.37692 4.57330 4.75307 4.80907 5.01903 5.09189 5.20383 5.25423 5.28779 5.29506 5.41505 5.47403 5.53879 5.60819 5.65000 5.70365 5.76124 5.81294 5.90118 6.26553 6.30473 6.53111 6.59896 6.73814 6.78194 6.92539 7.59545 7.60433 7.66300 7.86728 8.01584 8.29787 9.25826 9.85971 10.51972 11.44762 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033582 B = 0.003249 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.584908 B = 8616.422325 C = 9226.861930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.174 3.826 3 C -0.232 4.232 4 C 0.175 3.825 5 C -0.106 4.106 6 N -0.506 5.506 7 C 0.338 3.662 8 C 0.132 3.868 9 O -0.371 6.371 10 C 0.074 3.926 11 H 0.071 0.929 12 C -0.138 4.138 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.121 3.879 24 N -0.509 5.509 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.029 0.971 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 17.813 -9.111 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.028 3.972 3 C -0.254 4.254 4 C 0.029 3.971 5 C -0.164 4.164 6 N -0.223 5.223 7 C 0.070 3.930 8 C 0.053 3.947 9 O -0.288 6.288 10 C 0.016 3.984 11 H 0.089 0.911 12 C -0.177 4.177 13 C 0.054 3.946 14 N -0.333 5.333 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.006 4.006 24 N -0.226 5.226 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.553 16.856 -8.863 23.374 hybrid contribution 0.525 0.323 -0.119 0.628 sum -13.028 17.179 -8.982 23.356 Atomic orbital electron populations 1.20778 0.87744 1.04163 1.03587 1.21771 0.97651 0.88075 0.89697 1.22581 0.95725 1.00461 1.06635 1.21789 0.91553 0.94185 0.89532 1.20788 1.00387 0.91558 1.03624 1.68104 1.41770 0.98267 1.14144 1.22818 0.86280 0.93802 0.90086 1.20936 0.98198 0.88873 0.86657 1.87915 1.78097 1.39614 1.23168 1.23528 0.93056 0.83037 0.98788 0.91090 1.23002 1.00031 0.98642 0.95995 1.21170 0.82234 0.93849 0.97352 1.44371 1.05818 1.23790 1.59280 1.19079 0.84045 1.05044 1.27338 0.90364 1.24814 0.97893 0.97798 1.00041 1.69959 1.30618 1.18834 1.37655 0.86095 0.83821 0.78004 0.77705 1.21612 1.21683 1.20685 1.21929 0.91662 0.90971 0.96052 1.68090 1.09643 1.30418 1.14406 0.89732 0.89726 0.90166 0.83662 0.89699 0.90166 0.89619 0.90542 0.90752 0.91785 0.91581 0.93299 0.93578 0.93748 0.95363 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 36.01 0.37 -0.38 16 2 C 0.17 1.94 6.82 -82.24 -0.56 1.38 16 3 C -0.23 -2.24 9.54 -39.32 -0.38 -2.62 16 4 C 0.18 2.01 6.82 -82.24 -0.56 1.45 16 5 C -0.11 -0.80 10.22 36.01 0.37 -0.44 16 6 N -0.51 -7.53 10.27 -6.99 -0.07 -7.60 16 7 C 0.34 5.24 7.27 -157.20 -1.14 4.10 16 8 C 0.13 2.05 6.21 36.01 0.22 2.27 16 9 O -0.37 -6.91 10.14 -35.23 -0.36 -7.27 16 10 C 0.07 1.45 3.56 -24.46 -0.09 1.36 16 11 H 0.07 1.30 7.83 -51.93 -0.41 0.90 16 12 C -0.14 -2.84 6.68 -24.90 -0.17 -3.01 16 13 C 0.18 4.54 5.38 -3.07 -0.02 4.52 16 14 N -0.60 -16.24 3.39 -169.94 -0.58 -16.81 16 15 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -27.67 10.31 55.49 0.57 -27.10 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.12 2.72 6.98 -2.41 -0.02 2.70 16 24 N -0.51 -7.37 10.27 -6.99 -0.07 -7.44 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 28 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.05 1.34 7.38 -51.92 -0.38 0.95 16 37 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -34.10 335.21 -8.91 -43.01 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.21 Total: -3.62 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.22 Total: 4.28 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.15 Total: -58.96 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.36 Total: -7.27 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.10 -8.91 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223343244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.935 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds