Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38595 * 120.44593 * 2 1 4 4 C 1.38599 * 118.39713 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.44772 * 180.02562 * 4 3 2 6 6 N 1.32329 * 119.10325 * 0.02562 * 4 3 2 7 7 C 1.31793 * 120.82107 * 359.97438 * 6 4 3 8 8 C 1.50703 * 119.12139 * 179.97438 * 7 6 4 9 9 O 1.42904 * 109.46798 * 90.00409 * 8 7 6 10 10 C 1.42895 * 113.99762 * 179.97438 * 9 8 7 11 11 H 1.09004 * 110.88649 * 333.87839 * 10 9 8 12 12 C 1.55159 * 111.00472 * 209.99754 * 10 9 8 13 13 C 1.54320 * 102.94349 * 206.38766 * 12 10 9 14 14 N 1.47018 * 107.27210 * 22.19183 * 13 12 10 15 15 C 1.36945 * 125.64695 * 181.02594 * 14 13 12 16 16 H 1.08000 * 119.99441 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00031 * 0.02562 * 15 14 13 18 18 N 1.31619 * 120.00283 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46722 * 90.00437 * 19 17 15 21 21 H 1.48497 * 109.47157 * 210.00127 * 19 17 15 22 22 H 1.48494 * 109.47346 * 330.00290 * 19 17 15 23 23 C 1.47421 * 108.70379 * 1.28563 * 14 13 12 24 24 N 1.31792 * 121.75506 * 0.25737 * 7 6 4 25 25 H 1.09002 * 109.47030 * 89.99978 * 1 2 3 26 26 H 1.09005 * 109.47155 * 209.99852 * 1 2 3 27 27 H 1.09000 * 109.47351 * 330.00130 * 1 2 3 28 28 H 1.08006 * 120.80321 * 359.95592 * 3 2 1 29 29 H 1.09004 * 109.47325 * 269.98735 * 5 4 3 30 30 H 1.09003 * 109.47282 * 29.97937 * 5 4 3 31 31 H 1.08994 * 109.47191 * 149.98222 * 5 4 3 32 32 H 1.08993 * 109.47181 * 330.00426 * 8 7 6 33 33 H 1.09004 * 109.46946 * 210.00004 * 8 7 6 34 34 H 1.08996 * 110.71852 * 88.02268 * 12 10 9 35 35 H 1.08998 * 110.86977 * 324.82137 * 12 10 9 36 36 H 1.09010 * 109.88205 * 262.77471 * 13 12 10 37 37 H 1.09004 * 110.01290 * 141.68524 * 13 12 10 38 38 H 0.96998 * 120.00243 * 179.97438 * 18 17 15 39 39 H 1.08996 * 110.36244 * 94.48455 * 23 14 13 40 40 H 1.08997 * 110.36930 * 216.80538 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1948 0.0000 4 6 3.5944 1.1453 0.0005 5 6 4.4041 2.4163 0.0012 6 7 4.1963 -0.0332 0.0005 7 6 3.4955 -1.1493 0.0005 8 6 4.2204 -2.4706 -0.0001 9 8 4.4500 -2.8885 1.3470 10 6 5.1347 -4.1376 1.4593 11 1 4.9621 -4.7560 0.5784 12 6 4.7192 -4.8853 2.7538 13 6 5.9518 -5.7629 3.0570 14 7 7.1030 -5.1470 2.3810 15 6 8.3840 -5.6311 2.3857 16 1 9.1629 -5.1025 1.8564 17 6 8.6813 -6.8012 3.0709 18 7 7.7319 -7.4456 3.7156 19 14 10.4286 -7.4618 3.0768 20 1 11.1694 -6.8916 4.2306 21 1 10.3977 -8.9420 3.1911 22 1 11.1075 -7.0770 1.8135 23 6 6.6512 -3.9188 1.7024 24 7 2.1776 -1.1409 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6898 2.1417 -0.0007 29 1 4.5999 2.7229 -1.0264 30 1 3.8483 3.2009 0.5146 31 1 5.3495 2.2446 0.5156 32 1 5.1752 -2.3608 -0.5142 33 1 3.6147 -3.2171 -0.5139 34 1 3.8396 -5.5040 2.5763 35 1 4.5368 -4.1824 3.5667 36 1 5.7926 -6.7709 2.6738 37 1 6.1288 -5.7988 4.1320 38 1 7.9396 -8.2634 4.1941 39 1 6.8139 -3.0508 2.3412 40 1 7.1731 -3.7957 0.7535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223343244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = 3.436653 kcal Electronic energy + Delta-G solvation = -20904.252252 eV Core-core repulsion = 17719.075686 eV Total energy + Delta-G solvation = -3185.176566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18248 -39.91476 -37.69095 -35.80657 -34.78179 -34.01241 -31.18569 -30.33302 -29.45080 -28.56416 -28.05334 -26.27627 -23.29905 -22.71476 -22.09307 -21.88586 -19.00269 -18.80113 -18.15331 -17.02079 -16.72518 -16.49608 -16.26258 -15.99334 -15.67439 -15.14865 -14.80882 -14.32221 -14.17275 -14.10664 -13.87789 -13.72860 -13.46624 -13.33473 -13.04852 -12.98531 -12.91882 -12.73792 -12.37950 -12.13750 -12.03059 -11.81954 -11.72797 -11.50477 -11.30983 -10.73506 -10.58477 -10.37312 -10.29135 -8.94840 -7.86558 -5.24039 -0.23635 0.07740 1.46119 1.48861 1.57672 2.16810 2.49664 2.75681 3.02932 3.14787 3.32286 3.46115 3.73299 3.78235 3.94574 4.04744 4.06980 4.13586 4.25923 4.28955 4.43026 4.48043 4.58054 4.71344 4.72054 4.73949 4.77109 4.91477 4.94606 4.97264 4.99045 5.02220 5.18539 5.42113 5.50231 5.59738 5.70201 6.06130 6.11042 6.21588 7.06979 7.08297 7.72421 8.37447 9.24012 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033582 B = 0.003249 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.584908 B = 8616.422325 C = 9226.861930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.157 3.843 3 C -0.216 4.216 4 C 0.156 3.844 5 C -0.102 4.102 6 N -0.538 5.538 7 C 0.312 3.688 8 C 0.130 3.870 9 O -0.381 6.381 10 C 0.093 3.907 11 H 0.088 0.912 12 C -0.126 4.126 13 C 0.188 3.812 14 N -0.626 5.626 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.984 3.016 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.118 3.882 24 N -0.534 5.534 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.190 0.810 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.011 0.989 38 H 0.249 0.751 39 H 0.018 0.982 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 19.925 -10.236 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.012 3.988 3 C -0.238 4.238 4 C 0.011 3.989 5 C -0.159 4.159 6 N -0.256 5.256 7 C 0.043 3.957 8 C 0.052 3.948 9 O -0.299 6.299 10 C 0.034 3.966 11 H 0.106 0.894 12 C -0.164 4.164 13 C 0.063 3.937 14 N -0.353 5.353 15 C -0.376 4.376 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.811 3.189 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.192 1.192 23 C -0.008 4.008 24 N -0.251 5.251 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.207 0.793 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.687 19.014 -10.009 26.027 hybrid contribution 0.804 -0.183 0.207 0.850 sum -13.882 18.831 -9.802 25.366 Atomic orbital electron populations 1.20900 0.84915 1.05115 1.04881 1.22535 0.99515 0.87829 0.88945 1.23040 0.95044 1.01772 1.03899 1.22510 0.93094 0.94252 0.89036 1.20900 0.99662 0.90529 1.04844 1.68076 1.42812 0.99318 1.15371 1.22676 0.86959 0.93818 0.92238 1.21073 0.98825 0.89935 0.85011 1.87885 1.77610 1.38867 1.25536 1.23206 0.90820 0.83772 0.98771 0.89435 1.22833 0.98571 0.98301 0.96692 1.20915 0.84054 0.93796 0.94970 1.44670 1.05752 1.25046 1.59864 1.19487 0.85273 1.05441 1.27426 0.89882 1.25718 1.02114 0.98152 0.99844 1.70176 1.32590 1.18948 1.38280 0.85004 0.78864 0.76887 0.78102 1.21311 1.21750 1.19185 1.22036 0.94094 0.88950 0.95699 1.68072 1.09304 1.32376 1.15393 0.88094 0.90695 0.87265 0.79307 0.88112 0.87178 0.90993 0.90316 0.89416 0.89123 0.91514 0.95859 0.97113 0.94195 0.96425 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.22 71.24 0.73 -0.41 16 2 C 0.16 3.17 6.82 42.57 0.29 3.46 16 3 C -0.22 -3.52 9.54 22.44 0.21 -3.31 16 4 C 0.16 3.29 6.82 42.57 0.29 3.58 16 5 C -0.10 -1.30 10.22 71.24 0.73 -0.57 16 6 N -0.54 -15.81 10.27 -176.02 -1.81 -17.62 16 7 C 0.31 9.59 7.27 138.75 1.01 10.59 16 8 C 0.13 4.00 6.21 71.24 0.44 4.44 16 9 O -0.38 -14.10 10.14 -148.98 -1.51 -15.61 16 10 C 0.09 3.59 3.56 32.06 0.11 3.71 16 11 H 0.09 3.11 7.83 -2.39 -0.02 3.09 16 12 C -0.13 -5.15 6.68 31.78 0.21 -4.94 16 13 C 0.19 9.82 5.38 86.73 0.47 10.29 16 14 N -0.63 -34.31 3.39 -691.56 -2.35 -36.65 16 15 C -0.25 -14.49 10.28 84.03 0.86 -13.63 16 16 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 17 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 18 N -0.95 -58.60 10.31 21.65 0.22 -58.37 16 19 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.12 5.37 6.98 86.93 0.61 5.97 16 24 N -0.53 -15.05 10.27 -176.02 -1.81 -16.85 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 27 H 0.11 0.59 8.10 -2.39 -0.02 0.57 16 28 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 29 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.11 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 34 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.02 1.32 7.38 -2.38 -0.02 1.30 16 37 H 0.01 0.62 7.50 -2.38 -0.02 0.60 16 38 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.25 335.21 2.22 -74.02 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.02 Total: 6.47 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 6.43 Total: 15.82 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.74 Total: -129.50 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.51 Total: -15.61 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.25 2.22 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223343244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.459 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds