Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39898 * 109.52182 * 2 1 4 4 C 1.53120 * 109.52124 * 120.12996 * 2 1 3 5 5 C 1.53037 * 109.31129 * 177.53718 * 4 2 1 6 6 N 1.46847 * 109.52207 * 300.88179 * 5 4 2 7 7 C 1.46903 * 110.99499 * 185.79834 * 6 5 4 8 8 C 1.50694 * 109.47073 * 45.74993 * 7 6 5 9 9 C 1.37641 * 120.12762 * 259.72408 * 8 7 6 10 10 C 1.38613 * 120.24760 * 179.69634 * 9 8 7 11 11 C 1.38656 * 120.50350 * 0.60685 * 10 9 8 12 12 C 1.37600 * 120.24582 * 359.67148 * 11 10 9 13 13 C 1.40697 * 120.13188 * 79.99698 * 8 7 6 14 14 C 1.41401 * 120.24182 * 0.02562 * 13 8 7 15 15 H 1.07997 * 120.00023 * 334.16079 * 14 13 8 16 16 C 1.39940 * 120.00100 * 154.15555 * 14 13 8 17 17 N 1.30831 * 120.00091 * 343.54780 * 16 14 13 18 18 Si 1.86802 * 120.00148 * 163.54191 * 16 14 13 19 19 H 1.48498 * 109.46760 * 60.00204 * 18 16 14 20 20 H 1.48505 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46999 * 300.00447 * 18 16 14 22 22 C 1.46848 * 111.23361 * 61.68078 * 6 5 4 23 23 C 1.53038 * 109.52120 * 298.27529 * 22 6 5 24 24 H 1.09003 * 109.46962 * 299.87206 * 1 2 3 25 25 H 1.09001 * 109.47116 * 59.87270 * 1 2 3 26 26 H 1.09005 * 109.47246 * 179.87171 * 1 2 3 27 27 H 1.09001 * 109.49969 * 297.49596 * 4 2 1 28 28 H 1.08998 * 109.50638 * 57.57691 * 4 2 1 29 29 H 1.09002 * 109.46137 * 60.84991 * 5 4 2 30 30 H 1.08997 * 109.46540 * 180.82469 * 5 4 2 31 31 H 1.09000 * 109.47080 * 165.74485 * 7 6 5 32 32 H 1.08998 * 109.47193 * 285.74504 * 7 6 5 33 33 H 1.08004 * 119.87221 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.75058 * 180.29905 * 10 9 8 35 35 H 1.07997 * 119.87672 * 179.69694 * 11 10 9 36 36 H 1.08001 * 120.12555 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99894 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.46315 * 178.26214 * 22 6 5 39 39 H 1.09001 * 109.45502 * 58.28719 * 22 6 5 40 40 H 1.08998 * 109.50792 * 299.23701 * 23 22 6 41 41 H 1.09007 * 109.53168 * 179.14116 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9975 1.3186 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 3.5708 -0.7755 1.2126 6 7 4.0102 -1.4790 0.0008 7 6 5.4670 -1.6679 0.0009 8 6 5.9090 -2.1648 1.3532 9 6 6.4563 -1.2911 2.2651 10 6 6.8579 -1.7443 3.5120 11 6 6.7253 -3.0822 3.8509 12 6 6.1861 -3.9745 2.9529 13 6 5.7691 -3.5245 1.6864 14 6 5.2140 -4.4325 0.7553 15 1 4.5342 -4.0779 -0.0053 16 6 5.5456 -5.7905 0.8192 17 7 6.5895 -6.1774 1.5065 18 14 4.4977 -7.0511 -0.0766 19 1 4.4966 -6.7502 -1.5307 20 1 5.0562 -8.4086 0.1481 21 1 3.1070 -6.9965 0.4413 22 6 3.5708 -0.7759 -1.2112 23 6 2.0417 -0.7258 -1.2474 24 1 -0.3633 0.5119 0.8912 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3634 -1.0277 -0.0023 27 1 1.7162 -0.1878 2.1394 28 1 1.6441 -1.7391 1.2688 29 1 3.9680 0.2395 1.2066 30 1 3.9372 -1.3036 2.0928 31 1 5.7387 -2.3984 -0.7611 32 1 5.9565 -0.7183 -0.2152 33 1 6.5691 -0.2478 2.0098 34 1 7.2820 -1.0508 4.2232 35 1 7.0461 -3.4252 4.8235 36 1 6.0834 -5.0161 3.2191 37 1 6.8190 -7.1187 1.5511 38 1 3.9377 -1.3046 -2.0910 39 1 3.9674 0.2394 -1.2059 40 1 1.6446 -1.7407 -1.2666 41 1 1.7156 -0.1906 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = -40.588082 kcal Electronic energy + Delta-G solvation = -22295.505304 eV Core-core repulsion = 19088.499720 eV Total energy + Delta-G solvation = -3207.005583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.50556 -38.66860 -37.10735 -33.90068 -33.56690 -30.86877 -30.33934 -29.39252 -27.87282 -25.36449 -24.12320 -22.98307 -21.55806 -20.90826 -19.53944 -19.16371 -17.08877 -16.10016 -15.35228 -15.25491 -15.06362 -14.76250 -14.63714 -14.16968 -14.10881 -13.38822 -13.26820 -12.77275 -12.56874 -12.31759 -12.06768 -11.95635 -11.91655 -11.65058 -11.47443 -11.31611 -11.10685 -10.98480 -10.96344 -10.81357 -10.53455 -10.36026 -10.02377 -9.88520 -9.47195 -9.23135 -9.10664 -7.66199 -7.31993 -7.26306 -6.70068 -4.27839 2.81789 2.97989 3.09921 3.13418 3.29022 3.98118 4.47893 4.60353 4.67693 4.71062 4.83555 4.90576 5.38389 5.52355 5.56338 5.65152 5.71870 5.77155 5.81951 5.93115 5.97299 6.03596 6.05830 6.19530 6.23852 6.29011 6.37233 6.50472 6.52149 6.57378 6.70954 6.89995 7.16411 7.30361 7.42309 7.65068 7.69264 7.78106 7.98259 8.11795 8.18260 8.35873 8.72223 8.98081 9.04703 10.24470 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.006563 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.261679 B = 4265.581902 C = 5379.723277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 F -0.214 7.214 4 C -0.133 4.133 5 C 0.059 3.941 6 N -0.524 5.524 7 C 0.127 3.873 8 C -0.201 4.201 9 C -0.086 4.086 10 C -0.246 4.246 11 C -0.106 4.106 12 C -0.164 4.164 13 C 0.129 3.871 14 C -0.446 4.446 15 H 0.092 0.908 16 C 0.074 3.926 17 N -0.797 5.797 18 Si 0.906 3.094 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.053 3.947 23 C -0.131 4.131 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.025 0.975 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.014 0.986 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.279 0.721 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 6.585 -3.500 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.095 3.905 3 F -0.195 7.195 4 C -0.171 4.171 5 C -0.069 4.069 6 N -0.248 5.248 7 C 0.001 3.999 8 C -0.203 4.203 9 C -0.105 4.105 10 C -0.266 4.266 11 C -0.125 4.125 12 C -0.183 4.183 13 C 0.126 3.874 14 C -0.476 4.476 15 H 0.110 0.890 16 C -0.144 4.144 17 N -0.423 5.423 18 Si 0.731 3.269 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.189 1.189 22 C -0.075 4.075 23 C -0.169 4.169 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.656 5.936 -3.470 11.054 hybrid contribution 0.106 0.252 -0.303 0.408 sum -8.550 6.188 -3.773 11.208 Atomic orbital electron populations 1.22340 0.94081 1.03445 1.02822 1.21030 0.93850 0.77816 0.97813 1.92806 1.90401 1.38532 1.97753 1.22190 0.97469 1.01570 0.95919 1.22014 0.93113 0.96456 0.95289 1.62032 1.14167 1.48027 1.00605 1.20633 0.84801 0.97367 0.97130 1.19432 1.10582 0.95000 0.95269 1.20386 0.99449 0.96547 0.94069 1.20289 1.13150 0.95455 0.97662 1.20676 1.00269 0.93660 0.97856 1.21351 1.04300 0.99029 0.93656 1.17374 0.88135 0.90403 0.91443 1.19734 1.23747 0.90943 1.13139 0.89001 1.25970 0.93989 0.99848 0.94560 1.69835 1.20826 1.18023 1.33588 0.86410 0.81129 0.78871 0.80522 1.19073 1.20679 1.18904 1.22013 0.94244 0.96702 0.94585 1.22143 0.96823 1.01712 0.96271 0.91705 0.91854 0.90614 0.91137 0.89340 0.95642 0.88687 0.90421 0.96774 0.90024 0.89854 0.89738 0.86601 0.91036 0.90660 0.95239 0.89327 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 8.94 37.16 0.33 -1.46 16 2 C 0.11 1.53 1.24 -90.49 -0.11 1.41 16 3 F -0.21 -3.33 15.98 2.25 0.04 -3.30 16 4 C -0.13 -1.98 5.16 -26.65 -0.14 -2.12 16 5 C 0.06 1.06 4.70 -3.83 -0.02 1.04 16 6 N -0.52 -9.67 4.53 -236.12 -1.07 -10.74 16 7 C 0.13 2.59 4.60 -4.98 -0.02 2.57 16 8 C -0.20 -4.66 3.73 -103.92 -0.39 -5.04 16 9 C -0.09 -1.91 8.64 -39.66 -0.34 -2.25 16 10 C -0.25 -5.54 10.05 -39.29 -0.39 -5.93 16 11 C -0.11 -2.50 10.02 -39.66 -0.40 -2.89 16 12 C -0.16 -4.21 8.68 -38.87 -0.34 -4.55 16 13 C 0.13 3.31 5.56 -106.82 -0.59 2.72 16 14 C -0.45 -11.34 8.18 -37.74 -0.31 -11.65 16 15 H 0.09 2.29 6.85 -52.49 -0.36 1.93 16 16 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 17 N -0.80 -20.37 10.97 55.55 0.61 -19.76 16 18 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C 0.05 0.82 5.31 -3.83 -0.02 0.80 16 23 C -0.13 -1.74 5.17 -26.65 -0.14 -1.88 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.09 1.95 6.04 -51.93 -0.31 1.64 16 31 H 0.08 1.66 7.34 -51.93 -0.38 1.28 16 32 H 0.01 0.28 7.93 -51.93 -0.41 -0.14 16 33 H 0.08 1.67 8.03 -52.48 -0.42 1.25 16 34 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 3.09 6.21 -52.49 -0.33 2.76 16 37 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 38 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -26.58 325.25 -9.92 -36.49 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.39 Total: 6.35 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.97 Total: -27.51 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: -0.46 Total: -30.50 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.58 -9.92 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.096 kcal (2) G-P(sol) polarization free energy of solvation -26.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds