Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39898 * 109.52182 * 2 1 4 4 C 1.53120 * 109.52124 * 120.12996 * 2 1 3 5 5 C 1.53037 * 109.31129 * 177.53718 * 4 2 1 6 6 N 1.46847 * 109.52207 * 300.88179 * 5 4 2 7 7 C 1.46903 * 110.99499 * 185.79834 * 6 5 4 8 8 C 1.50694 * 109.47073 * 45.74993 * 7 6 5 9 9 C 1.37641 * 120.12762 * 259.72408 * 8 7 6 10 10 C 1.38613 * 120.24760 * 179.69634 * 9 8 7 11 11 C 1.38656 * 120.50350 * 0.60685 * 10 9 8 12 12 C 1.37600 * 120.24582 * 359.67148 * 11 10 9 13 13 C 1.40697 * 120.13188 * 79.99698 * 8 7 6 14 14 C 1.41401 * 120.24182 * 0.02562 * 13 8 7 15 15 H 1.07997 * 120.00023 * 334.16079 * 14 13 8 16 16 C 1.39940 * 120.00100 * 154.15555 * 14 13 8 17 17 N 1.30831 * 120.00091 * 343.54780 * 16 14 13 18 18 Si 1.86802 * 120.00148 * 163.54191 * 16 14 13 19 19 H 1.48498 * 109.46760 * 60.00204 * 18 16 14 20 20 H 1.48505 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46999 * 300.00447 * 18 16 14 22 22 C 1.46848 * 111.23361 * 61.68078 * 6 5 4 23 23 C 1.53038 * 109.52120 * 298.27529 * 22 6 5 24 24 H 1.09003 * 109.46962 * 299.87206 * 1 2 3 25 25 H 1.09001 * 109.47116 * 59.87270 * 1 2 3 26 26 H 1.09005 * 109.47246 * 179.87171 * 1 2 3 27 27 H 1.09001 * 109.49969 * 297.49596 * 4 2 1 28 28 H 1.08998 * 109.50638 * 57.57691 * 4 2 1 29 29 H 1.09002 * 109.46137 * 60.84991 * 5 4 2 30 30 H 1.08997 * 109.46540 * 180.82469 * 5 4 2 31 31 H 1.09000 * 109.47080 * 165.74485 * 7 6 5 32 32 H 1.08998 * 109.47193 * 285.74504 * 7 6 5 33 33 H 1.08004 * 119.87221 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.75058 * 180.29905 * 10 9 8 35 35 H 1.07997 * 119.87672 * 179.69694 * 11 10 9 36 36 H 1.08001 * 120.12555 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99894 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.46315 * 178.26214 * 22 6 5 39 39 H 1.09001 * 109.45502 * 58.28719 * 22 6 5 40 40 H 1.08998 * 109.50792 * 299.23701 * 23 22 6 41 41 H 1.09007 * 109.53168 * 179.14116 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9975 1.3186 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 3.5708 -0.7755 1.2126 6 7 4.0102 -1.4790 0.0008 7 6 5.4670 -1.6679 0.0009 8 6 5.9090 -2.1648 1.3532 9 6 6.4563 -1.2911 2.2651 10 6 6.8579 -1.7443 3.5120 11 6 6.7253 -3.0822 3.8509 12 6 6.1861 -3.9745 2.9529 13 6 5.7691 -3.5245 1.6864 14 6 5.2140 -4.4325 0.7553 15 1 4.5342 -4.0779 -0.0053 16 6 5.5456 -5.7905 0.8192 17 7 6.5895 -6.1774 1.5065 18 14 4.4977 -7.0511 -0.0766 19 1 4.4966 -6.7502 -1.5307 20 1 5.0562 -8.4086 0.1481 21 1 3.1070 -6.9965 0.4413 22 6 3.5708 -0.7759 -1.2112 23 6 2.0417 -0.7258 -1.2474 24 1 -0.3633 0.5119 0.8912 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3634 -1.0277 -0.0023 27 1 1.7162 -0.1878 2.1394 28 1 1.6441 -1.7391 1.2688 29 1 3.9680 0.2395 1.2066 30 1 3.9372 -1.3036 2.0928 31 1 5.7387 -2.3984 -0.7611 32 1 5.9565 -0.7183 -0.2152 33 1 6.5691 -0.2478 2.0098 34 1 7.2820 -1.0508 4.2232 35 1 7.0461 -3.4252 4.8235 36 1 6.0834 -5.0161 3.2191 37 1 6.8190 -7.1187 1.5511 38 1 3.9377 -1.3046 -2.0910 39 1 3.9674 0.2394 -1.2059 40 1 1.6446 -1.7407 -1.2666 41 1 1.7156 -0.1906 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = -53.126672 kcal Electronic energy + Delta-G solvation = -22296.049018 eV Core-core repulsion = 19088.499720 eV Total energy + Delta-G solvation = -3207.549298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.63853 -40.23741 -38.68791 -35.46704 -35.15252 -32.27835 -31.79003 -31.21315 -29.17434 -27.16322 -25.65131 -24.25047 -22.89071 -22.73908 -21.15468 -20.50580 -18.96261 -17.41251 -17.04484 -16.44070 -16.39156 -16.24177 -15.93926 -15.76764 -15.64079 -15.01929 -14.82047 -14.33215 -13.78558 -13.49493 -13.45342 -13.41805 -13.15622 -13.05412 -12.86938 -12.80757 -12.70642 -12.54337 -12.42284 -12.27729 -12.14380 -12.04199 -11.31935 -11.21751 -11.12801 -10.98959 -10.92040 -9.25619 -9.20403 -8.99337 -8.54110 -6.20365 1.02125 1.13579 1.42305 1.52339 1.59473 2.26417 2.81407 3.12271 3.54133 3.64588 3.77250 3.80294 3.89934 4.16935 4.31547 4.34746 4.47000 4.48427 4.52870 4.66098 4.68324 4.69755 4.73896 4.83672 4.85597 4.94791 5.05786 5.11568 5.12791 5.20757 5.22954 5.31814 5.41437 5.43155 5.56815 5.80631 6.03431 6.19606 6.24237 6.32014 6.39454 6.49118 6.81766 7.08562 7.15539 8.42254 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.006563 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.261679 B = 4265.581902 C = 5379.723277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 F -0.227 7.227 4 C -0.131 4.131 5 C 0.065 3.935 6 N -0.532 5.532 7 C 0.133 3.867 8 C -0.200 4.200 9 C -0.091 4.091 10 C -0.245 4.245 11 C -0.113 4.113 12 C -0.192 4.192 13 C 0.102 3.898 14 C -0.469 4.469 15 H 0.090 0.910 16 C 0.033 3.967 17 N -0.831 5.831 18 Si 0.974 3.026 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.262 1.262 22 C 0.050 3.950 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.284 0.716 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.093 0.907 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 7.354 -4.439 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.092 3.908 3 F -0.207 7.207 4 C -0.169 4.169 5 C -0.063 4.063 6 N -0.256 5.256 7 C 0.007 3.993 8 C -0.202 4.202 9 C -0.110 4.110 10 C -0.265 4.265 11 C -0.131 4.131 12 C -0.212 4.212 13 C 0.100 3.900 14 C -0.498 4.498 15 H 0.108 0.892 16 C -0.181 4.181 17 N -0.457 5.457 18 Si 0.796 3.204 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.077 4.077 23 C -0.165 4.165 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.112 0.888 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.256 6.723 -4.406 13.031 hybrid contribution 0.673 0.123 0.042 0.685 sum -9.584 6.846 -4.364 12.560 Atomic orbital electron populations 1.22302 0.91349 1.04609 1.03821 1.21167 0.95867 0.76887 0.96862 1.92786 1.90778 1.39441 1.97740 1.22169 0.95013 1.02106 0.97573 1.21889 0.95345 0.95182 0.93883 1.61982 1.12600 1.49086 1.01964 1.20484 0.86509 0.97122 0.95191 1.19736 1.09549 0.94387 0.96531 1.20662 0.98888 0.97480 0.93982 1.20630 1.12204 0.95419 0.98215 1.20919 0.99801 0.94031 0.98374 1.21332 1.06486 0.98683 0.94682 1.17693 0.88927 0.91700 0.91711 1.19870 1.24480 0.91900 1.13589 0.89173 1.26748 0.94725 1.01387 0.95225 1.69904 1.22171 1.18645 1.35018 0.85368 0.79217 0.76418 0.79404 1.18375 1.19988 1.18631 1.22121 0.96201 0.96071 0.93339 1.22155 0.94692 1.02413 0.97249 0.91177 0.90477 0.89383 0.90101 0.89359 0.96419 0.91796 0.91782 0.95988 0.87972 0.87167 0.87852 0.88473 0.90595 0.89990 0.95699 0.88806 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.94 71.98 0.64 -2.27 16 2 C 0.11 2.71 1.24 -10.71 -0.01 2.70 16 3 F -0.23 -6.58 15.98 44.97 0.72 -5.86 16 4 C -0.13 -3.71 5.16 30.65 0.16 -3.55 16 5 C 0.07 2.32 4.70 86.33 0.41 2.72 16 6 N -0.53 -19.42 4.53 -900.93 -4.08 -23.50 16 7 C 0.13 5.49 4.60 85.55 0.39 5.88 16 8 C -0.20 -9.40 3.73 -19.41 -0.07 -9.47 16 9 C -0.09 -4.04 8.64 22.22 0.19 -3.84 16 10 C -0.25 -10.84 10.05 22.46 0.23 -10.62 16 11 C -0.11 -5.34 10.02 22.22 0.22 -5.12 16 12 C -0.19 -10.19 8.68 22.73 0.20 -10.00 16 13 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 14 C -0.47 -24.42 8.18 23.46 0.19 -24.23 16 15 H 0.09 4.57 6.85 -2.91 -0.02 4.55 16 16 C 0.03 1.66 5.16 85.25 0.44 2.10 16 17 N -0.83 -43.62 10.97 21.83 0.24 -43.38 16 18 Si 0.97 38.33 29.59 68.60 2.03 40.36 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 C 0.05 1.50 5.31 86.33 0.46 1.96 16 23 C -0.13 -3.04 5.17 30.65 0.16 -2.88 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 29 H 0.02 0.64 7.88 -2.39 -0.02 0.63 16 30 H 0.06 2.66 6.04 -2.39 -0.01 2.65 16 31 H 0.06 2.78 7.34 -2.39 -0.02 2.77 16 32 H 0.02 0.85 7.93 -2.39 -0.02 0.84 16 33 H 0.10 4.04 8.03 -2.91 -0.02 4.01 16 34 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.10 5.42 6.21 -2.91 -0.02 5.41 16 37 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 38 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 39 H 0.02 0.76 7.88 -2.39 -0.02 0.75 16 40 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -57.84 325.25 3.39 -54.45 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 1.00 Total: 29.29 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 3.48 Total: -51.35 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -3.84 Total: -66.88 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.72 Total: -5.86 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -57.84 3.39 -54.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.321 kcal (2) G-P(sol) polarization free energy of solvation -57.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds