Wall clock time and date at job start Mon Mar 30 2020 01:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39903 * 109.50113 * 2 1 4 4 C 1.53115 * 109.53677 * 239.89897 * 2 1 3 5 5 C 1.53123 * 109.16292 * 182.38376 * 4 2 1 6 6 C 1.53037 * 109.27541 * 57.65302 * 5 4 2 7 7 N 1.46849 * 109.52715 * 300.82109 * 6 5 4 8 8 C 1.46895 * 110.99910 * 185.83514 * 7 6 5 9 9 C 1.50698 * 109.47053 * 45.79704 * 8 7 6 10 10 C 1.37641 * 120.12536 * 260.29945 * 9 8 7 11 11 C 1.38616 * 120.24806 * 180.29985 * 10 9 8 12 12 C 1.38661 * 120.50044 * 359.67090 * 11 10 9 13 13 C 1.37596 * 120.24817 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.13224 * 79.99306 * 9 8 7 15 15 C 1.41393 * 120.24029 * 0.02562 * 14 9 8 16 16 H 1.08003 * 120.00164 * 333.96660 * 15 14 9 17 17 C 1.39949 * 120.00135 * 153.97234 * 15 14 9 18 18 N 1.30824 * 119.99701 * 334.55927 * 17 15 14 19 19 Si 1.86795 * 120.00170 * 154.55746 * 17 15 14 20 20 H 1.48502 * 109.47255 * 59.99930 * 19 17 15 21 21 H 1.48498 * 109.47431 * 299.99844 * 19 17 15 22 22 H 1.48501 * 109.46971 * 179.97438 * 19 17 15 23 23 C 1.46852 * 111.19269 * 61.74138 * 7 6 5 24 24 H 1.09001 * 109.47142 * 299.92282 * 1 2 3 25 25 H 1.08998 * 109.46651 * 59.92298 * 1 2 3 26 26 H 1.08995 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.52695 * 302.29047 * 4 2 1 28 28 H 1.09003 * 109.52302 * 62.47955 * 4 2 1 29 29 H 1.08995 * 109.50637 * 177.59887 * 5 4 2 30 30 H 1.08999 * 109.50094 * 297.71750 * 5 4 2 31 31 H 1.08999 * 109.45982 * 180.80221 * 6 5 4 32 32 H 1.08997 * 109.45850 * 60.84118 * 6 5 4 33 33 H 1.08992 * 109.47551 * 285.79133 * 8 7 6 34 34 H 1.09006 * 109.46837 * 165.78929 * 8 7 6 35 35 H 1.08002 * 119.87648 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.75023 * 179.69268 * 11 10 9 37 37 H 1.08001 * 119.87600 * 180.02562 * 12 11 10 38 38 H 1.08003 * 120.12824 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00366 * 354.23314 * 18 17 15 40 40 H 1.08999 * 109.46503 * 58.27826 * 23 7 6 41 41 H 1.09003 * 109.45994 * 178.24213 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9971 1.3188 0.0000 4 6 2.0421 -0.7237 -1.2484 5 6 3.5721 -0.7709 -1.2099 6 6 4.0238 -1.4715 0.0735 7 7 3.5093 -0.7407 1.2387 8 6 4.0372 -1.3041 2.4885 9 6 5.5199 -1.5343 2.3489 10 6 6.0002 -2.7939 2.0711 11 6 7.3640 -3.0098 1.9483 12 6 8.2587 -1.9609 2.0966 13 6 7.8006 -0.6923 2.3683 14 6 6.4182 -0.4614 2.4955 15 6 5.9358 0.8380 2.7751 16 1 4.9373 1.1196 2.4749 17 6 6.7523 1.7594 3.4406 18 7 7.7091 1.3372 4.2266 19 14 6.4761 3.5919 3.2067 20 1 5.1028 3.9457 3.6473 21 1 6.6402 3.9381 1.7719 22 1 7.4653 4.3488 4.0153 23 6 2.0409 -0.7229 1.2483 24 1 -0.3633 0.5126 0.8907 25 1 -0.3632 0.5150 -0.8893 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6467 -1.7393 -1.2687 28 1 1.7165 -0.1873 -2.1397 29 1 3.9410 -1.3223 -2.0747 30 1 3.9681 0.2444 -1.2290 31 1 5.1129 -1.4942 0.1108 32 1 3.6389 -2.4912 0.0853 33 1 3.5405 -2.2513 2.6984 34 1 3.8531 -0.6081 3.3070 35 1 5.3123 -3.6181 1.9528 36 1 7.7324 -4.0024 1.7352 37 1 9.3191 -2.1405 1.9985 38 1 8.4992 0.1234 2.4831 39 1 7.8002 0.3898 4.4142 40 1 1.6653 -1.7461 1.2547 41 1 1.6899 -0.2018 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:20 Heat of formation + Delta-G solvation = -44.725494 kcal Electronic energy + Delta-G solvation = -22454.987904 eV Core-core repulsion = 19247.802908 eV Total energy + Delta-G solvation = -3207.184995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.24383 -38.79896 -37.29242 -33.92240 -33.65200 -31.70513 -30.15906 -29.18449 -26.59073 -25.91384 -24.78347 -22.72871 -21.60471 -20.90775 -19.60356 -19.33912 -17.62190 -15.99415 -15.49319 -15.18796 -14.91800 -14.69013 -14.52028 -14.11576 -13.80734 -13.68923 -13.46660 -12.80557 -12.47409 -12.31812 -12.23377 -12.08139 -11.96615 -11.92352 -11.45037 -11.28092 -11.21325 -11.03625 -10.70903 -10.61077 -10.40267 -10.31339 -10.03872 -9.95450 -9.54998 -9.27088 -8.87348 -7.73980 -7.52483 -7.46938 -7.05284 -4.32926 2.76673 2.86437 3.24927 3.36399 3.45985 4.10475 4.32415 4.56592 4.65820 4.69977 4.85140 4.94979 5.25557 5.44159 5.47524 5.56511 5.62164 5.72580 5.75653 5.84398 5.89805 5.98468 6.02841 6.04771 6.15959 6.19402 6.29701 6.37063 6.44876 6.61811 6.65492 6.80253 7.01003 7.23178 7.47459 7.61439 7.65766 7.78178 7.91061 7.94974 8.05527 8.27992 8.39883 8.88960 9.00031 10.13287 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.007385 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.343146 B = 3790.711470 C = 5088.622360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 F -0.197 7.197 4 C -0.137 4.137 5 C -0.119 4.119 6 C 0.059 3.941 7 N -0.518 5.518 8 C 0.129 3.871 9 C -0.205 4.205 10 C -0.073 4.073 11 C -0.262 4.262 12 C -0.084 4.084 13 C -0.220 4.220 14 C 0.115 3.885 15 C -0.502 4.502 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 1.062 2.938 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.277 1.277 23 C 0.037 3.963 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.298 0.702 40 H 0.039 0.961 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -2.983 -6.786 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 F -0.178 7.178 4 C -0.175 4.175 5 C -0.157 4.157 6 C -0.069 4.069 7 N -0.242 5.242 8 C 0.003 3.997 9 C -0.207 4.207 10 C -0.092 4.092 11 C -0.282 4.282 12 C -0.103 4.103 13 C -0.239 4.239 14 C 0.111 3.889 15 C -0.529 4.529 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.422 5.422 19 Si 0.886 3.114 20 H -0.201 1.201 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.092 4.092 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.959 -0.980 -6.353 11.854 hybrid contribution -0.772 -2.463 -0.364 2.607 sum -10.732 -3.443 -6.717 13.120 Atomic orbital electron populations 1.22342 0.94156 1.03093 1.03312 1.20869 0.93150 0.78996 0.96486 1.92869 1.90280 1.37058 1.97589 1.22160 0.97754 1.00612 0.97010 1.21597 0.94007 1.02602 0.97463 1.22096 1.02084 0.93330 0.89413 1.61933 1.04548 1.54736 1.03014 1.20618 0.92548 0.95694 0.90835 1.19361 0.93115 0.93021 1.15209 1.20411 0.94585 0.95192 0.99009 1.20216 0.93248 0.97321 1.17371 1.20596 0.96976 0.93723 0.99008 1.21183 0.96050 0.95843 1.10869 1.17417 0.90651 0.92236 0.88567 1.20755 1.03352 0.96157 1.32670 0.88975 1.27013 0.91727 1.07789 0.91874 1.70459 1.26922 1.21535 1.23333 0.83686 0.77091 0.72995 0.77667 1.20084 1.19977 1.20230 1.22606 0.90432 0.98661 0.97514 0.91375 0.91473 0.91089 0.91001 0.91181 0.91676 0.90416 0.88915 0.96232 0.96829 0.90512 0.89966 0.89694 0.89574 0.87873 0.88845 0.94292 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.94 37.16 0.33 -1.47 16 2 C 0.12 1.74 1.27 -90.54 -0.11 1.62 16 3 F -0.20 -3.48 16.34 2.25 0.04 -3.45 16 4 C -0.14 -1.76 5.07 -26.61 -0.13 -1.90 16 5 C -0.12 -1.81 5.97 -26.65 -0.16 -1.97 16 6 C 0.06 1.04 4.80 -3.83 -0.02 1.02 16 7 N -0.52 -9.80 4.47 -236.12 -1.06 -10.86 16 8 C 0.13 2.64 4.60 -4.98 -0.02 2.62 16 9 C -0.21 -4.75 3.76 -103.91 -0.39 -5.14 16 10 C -0.07 -1.60 8.59 -39.66 -0.34 -1.94 16 11 C -0.26 -5.81 10.05 -39.29 -0.39 -6.21 16 12 C -0.08 -1.97 10.02 -39.66 -0.40 -2.36 16 13 C -0.22 -5.63 7.95 -38.87 -0.31 -5.94 16 14 C 0.11 2.96 5.29 -106.83 -0.57 2.39 16 15 C -0.50 -13.13 8.11 -37.74 -0.31 -13.44 16 16 H 0.09 2.44 6.92 -52.48 -0.36 2.08 16 17 C 0.04 0.96 4.94 -17.34 -0.09 0.88 16 18 N -0.80 -21.32 12.33 55.55 0.68 -20.63 16 19 Si 1.06 22.44 30.00 -169.99 -5.10 17.34 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.04 0.57 4.46 -3.83 -0.02 0.55 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 31 H 0.09 1.93 6.02 -51.93 -0.31 1.62 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.01 0.26 7.94 -51.93 -0.41 -0.16 16 34 H 0.08 1.68 7.35 -51.93 -0.38 1.30 16 35 H 0.08 1.62 8.03 -52.49 -0.42 1.20 16 36 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.10 2.75 6.52 -52.48 -0.34 2.40 16 39 H 0.30 8.15 6.70 -40.82 -0.27 7.88 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -27.40 325.04 -9.82 -37.22 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.36 Total: 6.77 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -2.92 Total: -31.29 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: -0.37 Total: -31.49 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.10 Total: 17.34 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.40 -9.82 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.506 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds