Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39903 * 109.50113 * 2 1 4 4 C 1.53115 * 109.53677 * 239.89897 * 2 1 3 5 5 C 1.53123 * 109.16292 * 182.38376 * 4 2 1 6 6 C 1.53037 * 109.27541 * 57.65302 * 5 4 2 7 7 N 1.46849 * 109.52715 * 300.82109 * 6 5 4 8 8 C 1.46895 * 110.99910 * 185.83514 * 7 6 5 9 9 C 1.50698 * 109.47053 * 45.79704 * 8 7 6 10 10 C 1.37641 * 120.12536 * 260.29945 * 9 8 7 11 11 C 1.38616 * 120.24806 * 180.29985 * 10 9 8 12 12 C 1.38661 * 120.50044 * 359.67090 * 11 10 9 13 13 C 1.37596 * 120.24817 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.13224 * 79.99306 * 9 8 7 15 15 C 1.41393 * 120.24029 * 0.02562 * 14 9 8 16 16 H 1.08003 * 120.00164 * 333.96660 * 15 14 9 17 17 C 1.39949 * 120.00135 * 153.97234 * 15 14 9 18 18 N 1.30824 * 119.99701 * 334.55927 * 17 15 14 19 19 Si 1.86795 * 120.00170 * 154.55746 * 17 15 14 20 20 H 1.48502 * 109.47255 * 59.99930 * 19 17 15 21 21 H 1.48498 * 109.47431 * 299.99844 * 19 17 15 22 22 H 1.48501 * 109.46971 * 179.97438 * 19 17 15 23 23 C 1.46852 * 111.19269 * 61.74138 * 7 6 5 24 24 H 1.09001 * 109.47142 * 299.92282 * 1 2 3 25 25 H 1.08998 * 109.46651 * 59.92298 * 1 2 3 26 26 H 1.08995 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.52695 * 302.29047 * 4 2 1 28 28 H 1.09003 * 109.52302 * 62.47955 * 4 2 1 29 29 H 1.08995 * 109.50637 * 177.59887 * 5 4 2 30 30 H 1.08999 * 109.50094 * 297.71750 * 5 4 2 31 31 H 1.08999 * 109.45982 * 180.80221 * 6 5 4 32 32 H 1.08997 * 109.45850 * 60.84118 * 6 5 4 33 33 H 1.08992 * 109.47551 * 285.79133 * 8 7 6 34 34 H 1.09006 * 109.46837 * 165.78929 * 8 7 6 35 35 H 1.08002 * 119.87648 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.75023 * 179.69268 * 11 10 9 37 37 H 1.08001 * 119.87600 * 180.02562 * 12 11 10 38 38 H 1.08003 * 120.12824 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00366 * 354.23314 * 18 17 15 40 40 H 1.08999 * 109.46503 * 58.27826 * 23 7 6 41 41 H 1.09003 * 109.45994 * 178.24213 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9971 1.3188 0.0000 4 6 2.0421 -0.7237 -1.2484 5 6 3.5721 -0.7709 -1.2099 6 6 4.0238 -1.4715 0.0735 7 7 3.5093 -0.7407 1.2387 8 6 4.0372 -1.3041 2.4885 9 6 5.5199 -1.5343 2.3489 10 6 6.0002 -2.7939 2.0711 11 6 7.3640 -3.0098 1.9483 12 6 8.2587 -1.9609 2.0966 13 6 7.8006 -0.6923 2.3683 14 6 6.4182 -0.4614 2.4955 15 6 5.9358 0.8380 2.7751 16 1 4.9373 1.1196 2.4749 17 6 6.7523 1.7594 3.4406 18 7 7.7091 1.3372 4.2266 19 14 6.4761 3.5919 3.2067 20 1 5.1028 3.9457 3.6473 21 1 6.6402 3.9381 1.7719 22 1 7.4653 4.3488 4.0153 23 6 2.0409 -0.7229 1.2483 24 1 -0.3633 0.5126 0.8907 25 1 -0.3632 0.5150 -0.8893 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6467 -1.7393 -1.2687 28 1 1.7165 -0.1873 -2.1397 29 1 3.9410 -1.3223 -2.0747 30 1 3.9681 0.2444 -1.2290 31 1 5.1129 -1.4942 0.1108 32 1 3.6389 -2.4912 0.0853 33 1 3.5405 -2.2513 2.6984 34 1 3.8531 -0.6081 3.3070 35 1 5.3123 -3.6181 1.9528 36 1 7.7324 -4.0024 1.7352 37 1 9.3191 -2.1405 1.9985 38 1 8.4992 0.1234 2.4831 39 1 7.8002 0.3898 4.4142 40 1 1.6653 -1.7461 1.2547 41 1 1.6899 -0.2018 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -58.462259 kcal Electronic energy + Delta-G solvation = -22455.583574 eV Core-core repulsion = 19247.802908 eV Total energy + Delta-G solvation = -3207.780666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.46932 -40.38467 -38.86777 -35.73279 -35.07945 -32.85427 -31.82214 -31.06914 -27.74732 -27.45338 -26.59098 -24.06544 -22.98123 -22.75551 -21.28328 -20.57366 -19.51441 -17.27708 -16.87939 -16.62800 -16.38812 -16.29408 -15.92535 -15.72196 -15.41101 -15.18622 -14.90450 -14.14410 -14.00080 -13.80786 -13.61493 -13.44339 -13.29079 -13.05303 -12.92991 -12.88629 -12.79560 -12.57317 -12.20483 -12.16131 -11.97280 -11.83630 -11.49776 -11.23763 -11.11114 -11.04326 -10.78180 -9.44853 -9.41475 -9.14120 -8.93583 -6.32273 0.91491 0.99288 1.49396 1.64277 1.78345 2.33631 2.71075 3.02267 3.50670 3.68321 3.68869 3.76692 3.86856 4.11759 4.22390 4.27886 4.35208 4.44956 4.51528 4.56284 4.59511 4.64875 4.69187 4.74217 4.80511 4.94919 4.97249 5.03864 5.09690 5.12384 5.19977 5.29708 5.35394 5.42868 5.56607 5.80987 5.92107 6.03391 6.08688 6.22630 6.34204 6.38327 6.50190 6.94965 7.06132 8.11963 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.007385 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.343146 B = 3790.711470 C = 5088.622360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 F -0.224 7.224 4 C -0.131 4.131 5 C -0.117 4.117 6 C 0.064 3.936 7 N -0.541 5.541 8 C 0.136 3.864 9 C -0.202 4.202 10 C -0.077 4.077 11 C -0.251 4.251 12 C -0.093 4.093 13 C -0.244 4.244 14 C 0.089 3.911 15 C -0.528 4.528 16 H 0.080 0.920 17 C 0.003 3.997 18 N -0.823 5.823 19 Si 1.107 2.893 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.035 3.965 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.282 0.718 40 H 0.064 0.936 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 -4.734 -8.243 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.094 3.906 3 F -0.205 7.205 4 C -0.168 4.168 5 C -0.155 4.155 6 C -0.064 4.064 7 N -0.266 5.266 8 C 0.010 3.990 9 C -0.203 4.203 10 C -0.095 4.095 11 C -0.270 4.270 12 C -0.111 4.111 13 C -0.264 4.264 14 C 0.086 3.914 15 C -0.557 4.557 16 H 0.098 0.902 17 C -0.213 4.213 18 N -0.447 5.447 19 Si 0.926 3.074 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.093 4.093 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.060 -2.747 -7.817 14.632 hybrid contribution -0.128 -2.129 0.027 2.133 sum -12.188 -4.876 -7.789 15.264 Atomic orbital electron populations 1.22299 0.90981 1.04911 1.03879 1.21245 0.95531 0.77534 0.96282 1.92820 1.90870 1.39167 1.97666 1.22158 0.95438 1.02234 0.96986 1.21563 0.96230 1.00723 0.96939 1.21999 0.99834 0.94491 0.90075 1.61796 1.07001 1.55343 1.02455 1.20448 0.91195 0.96064 0.91291 1.19723 0.94405 0.92965 1.13227 1.20745 0.95241 0.95464 0.98095 1.20655 0.93252 0.98280 1.14852 1.20875 0.98570 0.93148 0.98535 1.21146 0.95911 0.96472 1.12868 1.17737 0.91366 0.93111 0.89194 1.20748 1.03221 0.97303 1.34414 0.90206 1.28176 0.91061 1.11189 0.90853 1.70564 1.28583 1.20337 1.25209 0.83118 0.77737 0.68816 0.77762 1.18606 1.19591 1.19630 1.22717 0.88088 1.00223 0.98320 0.91506 0.90327 0.88610 0.88265 0.89544 0.89558 0.93545 0.92664 0.94464 0.94755 0.92900 0.86842 0.86473 0.87471 0.90126 0.90566 0.91798 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.94 71.98 0.64 -2.22 16 2 C 0.11 2.90 1.27 -10.74 -0.01 2.89 16 3 F -0.22 -7.82 16.34 44.97 0.73 -7.09 16 4 C -0.13 -2.92 5.07 30.67 0.16 -2.76 16 5 C -0.12 -3.37 5.97 30.65 0.18 -3.19 16 6 C 0.06 2.18 4.80 86.33 0.41 2.59 16 7 N -0.54 -20.18 4.47 -900.94 -4.03 -24.21 16 8 C 0.14 5.56 4.60 85.56 0.39 5.96 16 9 C -0.20 -9.36 3.76 -19.40 -0.07 -9.43 16 10 C -0.08 -3.21 8.59 22.22 0.19 -3.02 16 11 C -0.25 -10.60 10.05 22.46 0.23 -10.37 16 12 C -0.09 -4.30 10.02 22.22 0.22 -4.08 16 13 C -0.24 -12.97 7.95 22.73 0.18 -12.79 16 14 C 0.09 4.76 5.29 -21.29 -0.11 4.64 16 15 C -0.53 -29.05 8.11 23.46 0.19 -28.86 16 16 H 0.08 4.46 6.92 -2.91 -0.02 4.44 16 17 C 0.00 0.16 4.94 85.26 0.42 0.58 16 18 N -0.82 -46.08 12.33 21.83 0.27 -45.81 16 19 Si 1.11 46.84 30.00 68.60 2.06 48.90 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 C 0.03 1.01 4.46 86.32 0.39 1.39 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.62 7.91 -2.39 -0.02 1.60 16 31 H 0.05 2.29 6.02 -2.39 -0.01 2.27 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.03 1.23 7.94 -2.39 -0.02 1.22 16 34 H 0.05 2.38 7.35 -2.38 -0.02 2.36 16 35 H 0.11 4.04 8.03 -2.91 -0.02 4.02 16 36 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 37 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 38 H 0.08 4.56 6.52 -2.91 -0.02 4.54 16 39 H 0.28 16.38 6.70 -92.71 -0.62 15.76 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 Total: -1.00 -62.43 325.04 3.59 -58.84 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.15 Total: 28.03 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 3.41 Total: -58.67 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -3.76 Total: -70.02 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.73 Total: -7.09 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.06 Total: 48.90 kcal Total: -62.43 3.59 -58.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.381 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds