Wall clock time and date at job start Mon Mar 30 2020 01:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39895 * 109.50494 * 2 1 4 4 C 1.53117 * 109.49879 * 120.12107 * 2 1 3 5 5 C 1.53128 * 109.15766 * 177.59710 * 4 2 1 6 6 C 1.53041 * 109.27414 * 302.34254 * 5 4 2 7 7 N 1.46849 * 109.52378 * 59.18210 * 6 5 4 8 8 C 1.46903 * 110.99937 * 174.15692 * 7 6 5 9 9 C 1.50702 * 109.46829 * 287.84004 * 8 7 6 10 10 C 1.37635 * 120.13211 * 102.50475 * 9 8 7 11 11 C 1.38611 * 120.24969 * 180.28870 * 10 9 8 12 12 C 1.38658 * 120.50203 * 359.44661 * 11 10 9 13 13 C 1.37603 * 120.24547 * 0.27081 * 12 11 10 14 14 C 1.40702 * 120.12356 * 282.23653 * 9 8 7 15 15 C 1.41393 * 120.24445 * 0.02562 * 14 9 8 16 16 H 1.08000 * 120.00105 * 30.58791 * 15 14 9 17 17 C 1.39949 * 119.99650 * 210.58703 * 15 14 9 18 18 N 1.30825 * 120.00108 * 11.65222 * 17 15 14 19 19 Si 1.86800 * 119.99557 * 191.65551 * 17 15 14 20 20 H 1.48501 * 109.47474 * 60.00117 * 19 17 15 21 21 H 1.48503 * 109.46755 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47134 * 299.99499 * 19 17 15 23 23 C 1.46843 * 111.19381 * 298.25472 * 7 6 5 24 24 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47372 * 300.07882 * 1 2 3 26 26 H 1.09007 * 109.46836 * 60.08008 * 1 2 3 27 27 H 1.09001 * 109.52556 * 297.49507 * 4 2 1 28 28 H 1.09006 * 109.52702 * 57.63142 * 4 2 1 29 29 H 1.08996 * 109.50168 * 62.28630 * 5 4 2 30 30 H 1.09003 * 109.50215 * 182.40373 * 5 4 2 31 31 H 1.09001 * 109.46629 * 299.16137 * 6 5 4 32 32 H 1.09009 * 109.45817 * 179.19760 * 6 5 4 33 33 H 1.08992 * 109.46766 * 167.83510 * 8 7 6 34 34 H 1.09000 * 109.46587 * 47.83562 * 8 7 6 35 35 H 1.08010 * 119.87417 * 0.03121 * 10 9 8 36 36 H 1.08003 * 119.75077 * 179.71526 * 11 10 9 37 37 H 1.07996 * 119.87966 * 180.25257 * 12 11 10 38 38 H 1.07993 * 120.12497 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99683 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.45751 * 181.75795 * 23 7 6 41 41 H 1.09000 * 109.46726 * 301.72344 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9971 1.3187 0.0000 4 6 2.0411 -0.7243 1.2485 5 6 3.5712 -0.7724 1.2105 6 6 4.0229 -1.4730 -0.0729 7 7 3.5092 -0.7417 -1.2382 8 6 4.0373 -1.3050 -2.4879 9 6 5.4956 -0.9495 -2.6224 10 6 6.4638 -1.8881 -2.3466 11 6 7.8059 -1.5621 -2.4637 12 6 8.1890 -0.2929 -2.8701 13 6 7.2381 0.6596 -3.1566 14 6 5.8725 0.3415 -3.0358 15 6 4.8867 1.3123 -3.3268 16 1 3.9402 1.2935 -2.8068 17 6 5.1373 2.2976 -4.2885 18 7 6.1762 2.1931 -5.0767 19 14 3.9885 3.7621 -4.4465 20 1 3.9617 4.5109 -3.1644 21 1 4.4704 4.6544 -5.5314 22 1 2.6199 3.2850 -4.7700 23 6 2.0410 -0.7230 -1.2483 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5150 0.8892 26 1 -0.3633 0.5126 -0.8908 27 1 1.7156 -0.1879 2.1397 28 1 1.6443 -1.7394 1.2689 29 1 3.9677 0.2427 1.2300 30 1 3.9395 -1.3243 2.0753 31 1 3.6375 -2.4925 -0.0852 32 1 5.1121 -1.4963 -0.1099 33 1 3.4840 -0.8957 -3.3331 34 1 3.9275 -2.3893 -2.4725 35 1 6.1767 -2.8813 -2.0337 36 1 8.5590 -2.3035 -2.2408 37 1 9.2375 -0.0510 -2.9619 38 1 7.5386 1.6473 -3.4734 39 1 6.3497 2.8758 -5.7436 40 1 1.6906 -0.2015 -2.1389 41 1 1.6647 -1.7460 -1.2550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:24 Heat of formation + Delta-G solvation = -39.826006 kcal Electronic energy + Delta-G solvation = -22432.376904 eV Core-core repulsion = 19225.404367 eV Total energy + Delta-G solvation = -3206.972537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.17204 -38.59172 -37.15922 -33.71061 -33.46427 -31.71576 -30.07417 -29.34363 -26.62141 -25.90194 -24.75081 -22.70847 -21.52944 -20.82159 -19.37618 -19.32777 -17.02240 -15.95948 -15.44209 -15.18471 -15.12746 -14.62832 -14.36419 -14.31796 -13.74821 -13.40024 -13.30374 -12.75949 -12.49153 -12.42734 -12.26918 -12.06089 -11.82531 -11.54062 -11.46151 -11.19378 -11.05805 -10.96901 -10.81299 -10.64102 -10.51098 -10.30083 -10.03925 -9.92549 -9.42416 -9.21034 -9.07557 -7.65444 -7.28266 -7.16506 -6.59567 -4.21792 2.88157 3.02679 3.15813 3.21631 3.34359 4.06999 4.37477 4.59932 4.74194 4.79546 4.88922 4.97555 5.25262 5.44751 5.51466 5.61453 5.71998 5.78580 5.80864 5.83085 5.95528 6.03282 6.05177 6.08536 6.25821 6.30694 6.33073 6.44200 6.53769 6.58211 6.61899 6.90682 7.22866 7.35418 7.46907 7.66727 7.66899 7.77824 8.01383 8.15298 8.26378 8.42798 8.80361 9.06170 9.12309 10.36147 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.007943 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.497626 B = 3524.048860 C = 5020.032770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 F -0.196 7.196 4 C -0.137 4.137 5 C -0.118 4.118 6 C 0.058 3.942 7 N -0.517 5.517 8 C 0.128 3.872 9 C -0.188 4.188 10 C -0.090 4.090 11 C -0.242 4.242 12 C -0.109 4.109 13 C -0.156 4.156 14 C 0.133 3.867 15 C -0.446 4.446 16 H 0.090 0.910 17 C 0.072 3.928 18 N -0.806 5.806 19 Si 0.905 3.095 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.037 3.963 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.016 0.984 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.084 0.916 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 -4.817 8.032 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 F -0.176 7.176 4 C -0.175 4.175 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.241 5.241 8 C 0.002 3.998 9 C -0.190 4.190 10 C -0.109 4.109 11 C -0.262 4.262 12 C -0.128 4.128 13 C -0.176 4.176 14 C 0.130 3.870 15 C -0.476 4.476 16 H 0.108 0.892 17 C -0.144 4.144 18 N -0.433 5.433 19 Si 0.730 3.270 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.092 4.092 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.430 -4.178 7.849 12.252 hybrid contribution -0.630 -0.089 -0.279 0.695 sum -9.060 -4.267 7.569 12.553 Atomic orbital electron populations 1.22349 0.94233 1.03045 1.03340 1.20866 0.93144 0.79132 0.96421 1.92881 1.90236 1.36938 1.97569 1.22155 0.97588 1.00633 0.97133 1.21576 0.94220 1.02606 0.97173 1.22069 1.01396 0.93515 0.90042 1.61844 1.04760 1.54711 1.02751 1.20615 0.94590 0.94113 0.90456 1.19476 0.92006 0.94655 1.12867 1.20360 0.93207 0.96706 1.00586 1.20290 0.94683 0.97139 1.14059 1.20675 0.97294 0.94267 1.00531 1.21329 0.92873 0.98898 1.04482 1.17371 0.92229 0.90214 0.87153 1.19695 1.02122 1.08244 1.17546 0.89162 1.25931 0.95406 0.98414 0.94642 1.69811 1.25771 1.32657 1.15066 0.86418 0.80899 0.81081 0.78563 1.18835 1.20761 1.19212 1.22617 0.90279 0.98557 0.97698 0.91115 0.91536 0.91318 0.91201 0.90996 0.90338 0.91699 0.96113 0.89730 0.90641 0.96604 0.90038 0.89881 0.89753 0.86801 0.91213 0.89803 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 8.94 37.16 0.33 -1.54 16 2 C 0.12 1.76 1.27 -90.54 -0.11 1.65 16 3 F -0.20 -3.58 16.35 2.25 0.04 -3.54 16 4 C -0.14 -1.72 5.07 -26.60 -0.13 -1.85 16 5 C -0.12 -1.70 5.97 -26.64 -0.16 -1.86 16 6 C 0.06 0.96 5.30 -3.83 -0.02 0.94 16 7 N -0.52 -9.66 4.09 -236.11 -0.97 -10.63 16 8 C 0.13 2.61 4.32 -4.97 -0.02 2.59 16 9 C -0.19 -4.44 4.80 -103.91 -0.50 -4.94 16 10 C -0.09 -2.01 8.84 -39.66 -0.35 -2.36 16 11 C -0.24 -5.51 10.05 -39.29 -0.39 -5.90 16 12 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 13 C -0.16 -4.14 8.65 -38.87 -0.34 -4.47 16 14 C 0.13 3.52 5.52 -106.82 -0.59 2.93 16 15 C -0.45 -11.81 8.10 -37.74 -0.31 -12.12 16 16 H 0.09 2.38 6.90 -52.49 -0.36 2.01 16 17 C 0.07 1.84 5.22 -17.34 -0.09 1.75 16 18 N -0.81 -21.32 11.02 55.55 0.61 -20.71 16 19 Si 0.91 19.65 29.57 -169.99 -5.03 14.62 16 20 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C 0.04 0.59 4.48 -3.84 -0.02 0.57 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 1.57 6.71 -51.92 -0.35 1.22 16 33 H 0.08 1.61 7.26 -51.93 -0.38 1.23 16 34 H 0.02 0.30 7.88 -51.93 -0.41 -0.11 16 35 H 0.08 1.62 8.01 -52.48 -0.42 1.20 16 36 H 0.08 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.11 3.13 6.40 -52.49 -0.34 2.79 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 40 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -28.11 327.49 -9.95 -38.06 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.44 Total: 4.91 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -3.10 Total: -27.64 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.35 Total: -31.34 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.11 -9.95 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.769 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds