Wall clock time and date at job start Mon Mar 30 2020 01:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.28404 * 2 1 4 4 F 1.39899 * 109.47391 * 299.32489 * 3 2 1 5 5 C 1.54259 * 110.32406 * 237.87384 * 2 1 3 6 6 C 1.54376 * 105.05978 * 241.10169 * 5 2 1 7 7 N 1.48560 * 104.59626 * 23.85314 * 6 5 2 8 8 C 1.46899 * 111.00207 * 200.95966 * 7 6 5 9 9 C 1.50709 * 109.47027 * 176.50369 * 8 7 6 10 10 C 1.37633 * 120.12548 * 254.00452 * 9 8 7 11 11 C 1.38619 * 120.24504 * 180.29960 * 10 9 8 12 12 C 1.38648 * 120.50082 * 359.72212 * 11 10 9 13 13 C 1.37596 * 120.24971 * 359.97438 * 12 11 10 14 14 C 1.40698 * 120.12695 * 73.72951 * 9 8 7 15 15 C 1.41394 * 120.24453 * 359.97041 * 14 9 8 16 16 H 1.08007 * 119.99946 * 27.25082 * 15 14 9 17 17 C 1.39945 * 120.00226 * 207.51471 * 15 14 9 18 18 N 1.30822 * 119.99557 * 10.99600 * 17 15 14 19 19 Si 1.86796 * 120.00308 * 190.98734 * 17 15 14 20 20 H 1.48501 * 109.47178 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46793 * 120.00429 * 19 17 15 22 22 H 1.48500 * 109.47238 * 240.00339 * 19 17 15 23 23 C 1.48565 * 104.22324 * 320.51819 * 7 6 5 24 24 H 1.08997 * 109.46763 * 180.67296 * 1 2 3 25 25 H 1.08999 * 109.46942 * 300.67442 * 1 2 3 26 26 H 1.09005 * 109.46940 * 60.67443 * 1 2 3 27 27 H 1.08993 * 109.47324 * 59.32724 * 3 2 1 28 28 H 1.09001 * 109.46691 * 179.32766 * 3 2 1 29 29 H 1.09003 * 110.32332 * 122.20888 * 5 2 1 30 30 H 1.09002 * 110.32430 * 0.02562 * 5 2 1 31 31 H 1.08997 * 110.41710 * 265.07365 * 6 5 2 32 32 H 1.09003 * 110.41117 * 142.62944 * 6 5 2 33 33 H 1.08994 * 109.47289 * 56.50697 * 8 7 6 34 34 H 1.09001 * 109.47199 * 296.49787 * 8 7 6 35 35 H 1.08005 * 119.87987 * 0.04616 * 10 9 8 36 36 H 1.07999 * 119.74420 * 179.69344 * 11 10 9 37 37 H 1.08003 * 119.87703 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.12987 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99892 * 179.97438 * 18 17 15 40 40 H 1.08993 * 110.41236 * 158.25698 * 23 7 6 41 41 H 1.08999 * 110.40446 * 280.70646 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 9 1.6162 2.0966 -1.1499 5 6 2.0658 -0.7693 -1.2251 6 6 2.8807 -1.9415 -0.6377 7 7 2.3148 -2.1474 0.7204 8 6 3.2650 -2.8609 1.5841 9 6 2.6928 -2.9753 2.9736 10 6 3.1890 -2.1931 3.9916 11 6 2.6687 -2.3007 5.2719 12 6 1.6406 -3.1912 5.5412 13 6 1.1250 -3.9786 4.5376 14 6 1.6453 -3.8779 3.2339 15 6 1.1233 -4.6819 2.1945 16 1 1.7474 -4.9523 1.3556 17 6 -0.2038 -5.1227 2.2502 18 7 -1.0221 -4.6231 3.1402 19 14 -0.8066 -6.4242 1.0535 20 1 0.3060 -6.8236 0.1546 21 1 -1.2812 -7.6105 1.8102 22 1 -1.9237 -5.8736 0.2447 23 6 2.0662 -0.7722 1.2246 24 1 -0.3633 -1.0276 0.0121 25 1 -0.3633 0.5243 0.8839 26 1 -0.3633 0.5033 -0.8960 27 1 1.6947 1.9577 0.8838 28 1 3.1503 1.4196 0.0121 29 1 2.7082 -0.1250 -1.8254 30 1 1.2388 -1.1465 -1.8266 31 1 3.9360 -1.6765 -0.5736 32 1 2.7490 -2.8376 -1.2441 33 1 4.2051 -2.3106 1.6226 34 1 3.4438 -3.8580 1.1817 35 1 3.9895 -1.4958 3.7930 36 1 3.0675 -1.6865 6.0657 37 1 1.2431 -3.2671 6.5425 38 1 0.3239 -4.6713 4.7494 39 1 -1.9421 -4.9284 3.1785 40 1 1.3213 -0.7878 2.0201 41 1 2.9941 -0.3241 1.5800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:03 Heat of formation + Delta-G solvation = -37.943344 kcal Electronic energy + Delta-G solvation = -22256.587172 eV Core-core repulsion = 19049.696273 eV Total energy + Delta-G solvation = -3206.890899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.53873 -39.09181 -37.39413 -33.72465 -33.51823 -30.65012 -29.44773 -28.62434 -26.85276 -25.93797 -25.09484 -23.42904 -21.00149 -20.78591 -19.45287 -18.89356 -17.08406 -15.99986 -15.89017 -15.53082 -15.30498 -14.92517 -14.51206 -13.89196 -13.82742 -13.63399 -13.24186 -12.80740 -12.57303 -12.29968 -12.14657 -12.03024 -11.51416 -11.41005 -11.31392 -11.05511 -11.03216 -10.91368 -10.68540 -10.52518 -10.41740 -10.33748 -10.30391 -10.20154 -9.48278 -9.19789 -9.13321 -7.75462 -7.32913 -7.26485 -6.61869 -4.23480 2.81876 2.99069 3.13681 3.18542 3.28588 4.02203 4.44812 4.65610 4.74890 4.79043 4.97792 5.07060 5.25795 5.39000 5.54104 5.68009 5.76360 5.84121 5.85129 5.96945 6.03644 6.10812 6.14976 6.25412 6.28994 6.31834 6.37734 6.48837 6.50720 6.60232 6.66391 6.82097 7.17420 7.31125 7.42279 7.48870 7.67354 7.73948 7.96245 8.12639 8.15831 8.38294 8.72728 9.00591 9.05876 10.31722 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.006858 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.722059 B = 4082.118630 C = 5084.651800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C 0.073 3.927 4 F -0.219 7.219 5 C -0.111 4.111 6 C 0.028 3.972 7 N -0.479 5.479 8 C 0.119 3.881 9 C -0.198 4.198 10 C -0.088 4.088 11 C -0.246 4.246 12 C -0.107 4.107 13 C -0.162 4.162 14 C 0.129 3.871 15 C -0.429 4.429 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.801 5.801 19 Si 0.906 3.094 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.058 3.942 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.276 0.724 40 H 0.089 0.911 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 6.399 -5.667 9.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 C 0.018 3.982 4 F -0.200 7.200 5 C -0.149 4.149 6 C -0.101 4.101 7 N -0.202 5.202 8 C -0.008 4.008 9 C -0.200 4.200 10 C -0.107 4.107 11 C -0.265 4.265 12 C -0.126 4.126 13 C -0.181 4.181 14 C 0.126 3.874 15 C -0.459 4.459 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.428 5.428 19 Si 0.731 3.269 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.071 4.071 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.192 6.050 -5.651 8.872 hybrid contribution 0.347 0.027 -0.397 0.528 sum 3.539 6.076 -6.048 9.275 Atomic orbital electron populations 1.21778 0.92821 1.03268 1.01069 1.21933 0.97642 0.93328 0.97069 1.22099 0.99190 0.92096 0.84802 1.92727 1.91528 1.82457 1.53324 1.22364 0.99780 0.96271 0.96444 1.23136 0.95920 0.98175 0.92831 1.65497 1.40837 1.13419 1.00450 1.20750 0.90543 0.97640 0.91864 1.19415 1.05171 1.02787 0.92586 1.20340 0.98606 0.98257 0.93485 1.20281 1.03847 1.06391 0.95996 1.20690 0.96866 0.97559 0.97446 1.21425 1.02598 1.01866 0.92241 1.17383 0.89106 0.88784 0.92157 1.19494 0.95703 1.25470 1.05184 0.90451 1.25837 0.96977 0.95659 0.95639 1.69812 1.05537 1.36036 1.31376 0.86303 0.79264 0.80633 0.80708 1.18590 1.20175 1.20159 1.22957 0.99588 0.88812 0.95704 0.90825 0.92798 0.92937 0.90777 0.91193 0.91812 0.90774 0.94866 0.90436 0.96734 0.91056 0.90134 0.89922 0.89772 0.86195 0.91319 0.89294 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.10 37.16 0.30 -1.69 16 2 C -0.10 -1.43 0.86 -153.12 -0.13 -1.57 16 3 C 0.07 0.92 6.11 37.16 0.23 1.14 16 4 F -0.22 -3.04 16.61 2.25 0.04 -3.01 16 5 C -0.11 -1.55 6.13 -25.35 -0.16 -1.70 16 6 C 0.03 0.43 6.49 -2.18 -0.01 0.41 16 7 N -0.48 -8.97 5.27 -231.41 -1.22 -10.20 16 8 C 0.12 2.36 4.35 -4.97 -0.02 2.34 16 9 C -0.20 -4.52 4.56 -103.91 -0.47 -4.99 16 10 C -0.09 -1.92 9.53 -39.66 -0.38 -2.30 16 11 C -0.25 -5.46 10.05 -39.29 -0.39 -5.86 16 12 C -0.11 -2.51 10.02 -39.66 -0.40 -2.91 16 13 C -0.16 -4.15 8.67 -38.88 -0.34 -4.49 16 14 C 0.13 3.28 5.56 -106.83 -0.59 2.69 16 15 C -0.43 -10.92 8.33 -37.74 -0.31 -11.23 16 16 H 0.08 1.94 6.64 -52.48 -0.35 1.59 16 17 C 0.07 1.85 5.26 -17.34 -0.09 1.76 16 18 N -0.80 -20.54 10.79 55.55 0.60 -19.94 16 19 Si 0.91 18.92 29.57 -169.99 -5.03 13.90 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 C 0.06 0.99 4.74 -2.18 -0.01 0.98 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.06 0.80 7.59 -51.93 -0.39 0.41 16 30 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 31 H 0.03 0.47 7.92 -51.93 -0.41 0.06 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.01 0.27 7.77 -51.93 -0.40 -0.14 16 34 H 0.07 1.45 7.08 -51.93 -0.37 1.08 16 35 H 0.08 1.57 7.99 -52.48 -0.42 1.15 16 36 H 0.08 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.08 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.12 3.20 6.15 -52.48 -0.32 2.88 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 40 H 0.09 1.78 7.72 -51.93 -0.40 1.38 16 41 H 0.03 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -26.52 329.58 -9.80 -36.32 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.37 Total: 5.36 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.79 Total: -27.41 kcal Atomic # 7 Polarization: -29.51 SS G_CDS: -0.62 Total: -30.13 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.52 -9.80 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.627 kcal (2) G-P(sol) polarization free energy of solvation -26.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds