Wall clock time and date at job start Mon Mar 30 2020 01:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.28404 * 2 1 4 4 F 1.39899 * 109.47391 * 299.32489 * 3 2 1 5 5 C 1.54259 * 110.32406 * 237.87384 * 2 1 3 6 6 C 1.54376 * 105.05978 * 241.10169 * 5 2 1 7 7 N 1.48560 * 104.59626 * 23.85314 * 6 5 2 8 8 C 1.46899 * 111.00207 * 200.95966 * 7 6 5 9 9 C 1.50709 * 109.47027 * 176.50369 * 8 7 6 10 10 C 1.37633 * 120.12548 * 254.00452 * 9 8 7 11 11 C 1.38619 * 120.24504 * 180.29960 * 10 9 8 12 12 C 1.38648 * 120.50082 * 359.72212 * 11 10 9 13 13 C 1.37596 * 120.24971 * 359.97438 * 12 11 10 14 14 C 1.40698 * 120.12695 * 73.72951 * 9 8 7 15 15 C 1.41394 * 120.24453 * 359.97041 * 14 9 8 16 16 H 1.08007 * 119.99946 * 27.25082 * 15 14 9 17 17 C 1.39945 * 120.00226 * 207.51471 * 15 14 9 18 18 N 1.30822 * 119.99557 * 10.99600 * 17 15 14 19 19 Si 1.86796 * 120.00308 * 190.98734 * 17 15 14 20 20 H 1.48501 * 109.47178 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46793 * 120.00429 * 19 17 15 22 22 H 1.48500 * 109.47238 * 240.00339 * 19 17 15 23 23 C 1.48565 * 104.22324 * 320.51819 * 7 6 5 24 24 H 1.08997 * 109.46763 * 180.67296 * 1 2 3 25 25 H 1.08999 * 109.46942 * 300.67442 * 1 2 3 26 26 H 1.09005 * 109.46940 * 60.67443 * 1 2 3 27 27 H 1.08993 * 109.47324 * 59.32724 * 3 2 1 28 28 H 1.09001 * 109.46691 * 179.32766 * 3 2 1 29 29 H 1.09003 * 110.32332 * 122.20888 * 5 2 1 30 30 H 1.09002 * 110.32430 * 0.02562 * 5 2 1 31 31 H 1.08997 * 110.41710 * 265.07365 * 6 5 2 32 32 H 1.09003 * 110.41117 * 142.62944 * 6 5 2 33 33 H 1.08994 * 109.47289 * 56.50697 * 8 7 6 34 34 H 1.09001 * 109.47199 * 296.49787 * 8 7 6 35 35 H 1.08005 * 119.87987 * 0.04616 * 10 9 8 36 36 H 1.07999 * 119.74420 * 179.69344 * 11 10 9 37 37 H 1.08003 * 119.87703 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.12987 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99892 * 179.97438 * 18 17 15 40 40 H 1.08993 * 110.41236 * 158.25698 * 23 7 6 41 41 H 1.08999 * 110.40446 * 280.70646 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 9 1.6162 2.0966 -1.1499 5 6 2.0658 -0.7693 -1.2251 6 6 2.8807 -1.9415 -0.6377 7 7 2.3148 -2.1474 0.7204 8 6 3.2650 -2.8609 1.5841 9 6 2.6928 -2.9753 2.9736 10 6 3.1890 -2.1931 3.9916 11 6 2.6687 -2.3007 5.2719 12 6 1.6406 -3.1912 5.5412 13 6 1.1250 -3.9786 4.5376 14 6 1.6453 -3.8779 3.2339 15 6 1.1233 -4.6819 2.1945 16 1 1.7474 -4.9523 1.3556 17 6 -0.2038 -5.1227 2.2502 18 7 -1.0221 -4.6231 3.1402 19 14 -0.8066 -6.4242 1.0535 20 1 0.3060 -6.8236 0.1546 21 1 -1.2812 -7.6105 1.8102 22 1 -1.9237 -5.8736 0.2447 23 6 2.0662 -0.7722 1.2246 24 1 -0.3633 -1.0276 0.0121 25 1 -0.3633 0.5243 0.8839 26 1 -0.3633 0.5033 -0.8960 27 1 1.6947 1.9577 0.8838 28 1 3.1503 1.4196 0.0121 29 1 2.7082 -0.1250 -1.8254 30 1 1.2388 -1.1465 -1.8266 31 1 3.9360 -1.6765 -0.5736 32 1 2.7490 -2.8376 -1.2441 33 1 4.2051 -2.3106 1.6226 34 1 3.4438 -3.8580 1.1817 35 1 3.9895 -1.4958 3.7930 36 1 3.0675 -1.6865 6.0657 37 1 1.2431 -3.2671 6.5425 38 1 0.3239 -4.6713 4.7494 39 1 -1.9421 -4.9284 3.1785 40 1 1.3213 -0.7878 2.0201 41 1 2.9941 -0.3241 1.5800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:03 Heat of formation + Delta-G solvation = -50.845366 kcal Electronic energy + Delta-G solvation = -22257.146646 eV Core-core repulsion = 19049.696273 eV Total energy + Delta-G solvation = -3207.450373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.56449 -40.47989 -39.08432 -35.40486 -35.09577 -32.17901 -31.26869 -30.04382 -28.01425 -27.47719 -26.77518 -24.83488 -22.75877 -22.24504 -21.11805 -20.11862 -18.94794 -17.18474 -17.14717 -17.01435 -16.54611 -16.27148 -16.15833 -15.54392 -15.27523 -15.06027 -14.61192 -14.33372 -14.22901 -13.62634 -13.56603 -13.45097 -13.19207 -13.04120 -12.75793 -12.67552 -12.52003 -12.37980 -12.16906 -12.04032 -11.99139 -11.64637 -11.46253 -11.32323 -11.27687 -10.99754 -10.97861 -9.23451 -9.13801 -9.03777 -8.47080 -6.15959 1.03470 1.17101 1.40401 1.53037 1.55458 2.26795 2.88496 3.20190 3.48843 3.62701 3.72691 3.94250 4.07120 4.18336 4.26913 4.33222 4.40841 4.44692 4.56138 4.58036 4.68049 4.73558 4.77374 4.84584 4.87126 4.91986 5.03394 5.10657 5.12612 5.17941 5.29788 5.33664 5.39726 5.44192 5.59748 5.84441 6.01487 6.18943 6.23214 6.28262 6.38476 6.54013 6.83981 7.11574 7.18378 8.48369 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.006858 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.722059 B = 4082.118630 C = 5084.651800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C 0.077 3.923 4 F -0.225 7.225 5 C -0.105 4.105 6 C 0.030 3.970 7 N -0.508 5.508 8 C 0.125 3.875 9 C -0.196 4.196 10 C -0.092 4.092 11 C -0.243 4.243 12 C -0.116 4.116 13 C -0.192 4.192 14 C 0.099 3.901 15 C -0.449 4.449 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.835 5.835 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.064 3.936 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.280 0.720 40 H 0.051 0.949 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 7.840 -6.696 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C 0.022 3.978 4 F -0.206 7.206 5 C -0.143 4.143 6 C -0.098 4.098 7 N -0.231 5.231 8 C -0.002 4.002 9 C -0.198 4.198 10 C -0.111 4.111 11 C -0.262 4.262 12 C -0.135 4.135 13 C -0.212 4.212 14 C 0.096 3.904 15 C -0.480 4.480 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.463 5.463 19 Si 0.793 3.207 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.064 4.064 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.766 7.497 -6.677 11.114 hybrid contribution -0.077 -0.346 -0.001 0.354 sum 4.689 7.151 -6.679 10.850 Atomic orbital electron populations 1.21720 0.93744 1.01439 1.01675 1.21881 0.96892 0.94754 0.96086 1.22119 1.00391 0.90339 0.84932 1.92719 1.91734 1.82407 1.53781 1.22346 0.99791 0.95959 0.96189 1.23170 0.97028 0.98771 0.90842 1.65363 1.41422 1.14481 1.01847 1.20633 0.91406 0.97752 0.90381 1.19801 1.03813 1.01562 0.94609 1.20692 0.99050 0.98301 0.93010 1.20669 1.02806 1.05623 0.97118 1.20937 0.97281 0.97465 0.97806 1.21388 1.03325 1.03074 0.93380 1.17719 0.90473 0.89983 0.92217 1.19582 0.96278 1.26760 1.05335 0.90925 1.26563 0.96901 0.97210 0.97181 1.69891 1.05918 1.37389 1.33065 0.85331 0.78613 0.78165 0.78621 1.18223 1.19542 1.19939 1.22808 0.99198 0.88633 0.95797 0.93817 0.92862 0.91644 0.89628 0.88980 0.89568 0.91301 0.92984 0.90680 0.94573 0.92192 0.87002 0.87016 0.88104 0.88371 0.91010 0.93012 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.10 71.98 0.58 -3.23 16 2 C -0.10 -2.58 0.86 -51.28 -0.04 -2.63 16 3 C 0.08 1.68 6.11 71.98 0.44 2.12 16 4 F -0.23 -5.55 16.61 44.97 0.75 -4.80 16 5 C -0.10 -2.69 6.13 31.49 0.19 -2.49 16 6 C 0.03 0.85 6.49 86.45 0.56 1.41 16 7 N -0.51 -18.60 5.27 -886.04 -4.67 -23.27 16 8 C 0.13 4.85 4.35 85.56 0.37 5.22 16 9 C -0.20 -8.90 4.56 -19.40 -0.09 -8.99 16 10 C -0.09 -3.83 9.53 22.22 0.21 -3.62 16 11 C -0.24 -10.37 10.05 22.46 0.23 -10.15 16 12 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 13 C -0.19 -10.19 8.67 22.73 0.20 -9.99 16 14 C 0.10 5.18 5.56 -21.29 -0.12 5.06 16 15 C -0.45 -23.65 8.33 23.46 0.20 -23.46 16 16 H 0.07 3.76 6.64 -2.91 -0.02 3.74 16 17 C 0.03 1.74 5.26 85.26 0.45 2.18 16 18 N -0.83 -44.62 10.79 21.83 0.24 -44.38 16 19 Si 0.97 39.79 29.57 68.60 2.03 41.82 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 C 0.06 2.11 4.74 86.45 0.41 2.52 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.74 7.89 -2.38 -0.02 1.72 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.09 1.85 7.59 -2.39 -0.02 1.83 16 30 H 0.07 1.84 7.71 -2.39 -0.02 1.82 16 31 H 0.05 1.31 7.92 -2.39 -0.02 1.29 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.04 1.22 7.77 -2.39 -0.02 1.20 16 34 H 0.06 2.42 7.08 -2.39 -0.02 2.41 16 35 H 0.11 3.94 7.99 -2.91 -0.02 3.92 16 36 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.10 5.54 6.15 -2.91 -0.02 5.53 16 39 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 40 H 0.05 2.09 7.72 -2.39 -0.02 2.07 16 41 H 0.05 1.45 7.67 -2.39 -0.02 1.44 16 Total: -1.00 -58.32 329.58 3.15 -55.17 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 1.00 Total: 26.75 kcal Atomic # 6 Polarization: -55.10 SS G_CDS: 3.81 Total: -51.29 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -4.44 Total: -67.65 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.75 Total: -4.80 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -58.32 3.15 -55.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.328 kcal (2) G-P(sol) polarization free energy of solvation -58.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds