Wall clock time and date at job start Mon Mar 30 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38103 * 126.29559 * 2 1 4 4 C 1.47361 * 126.42360 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99764 * 353.65480 * 4 3 2 6 6 N 1.34774 * 120.00198 * 173.65495 * 4 3 2 7 7 C 1.46494 * 120.00286 * 174.35059 * 6 4 3 8 8 C 1.36983 * 119.99764 * 354.34995 * 6 4 3 9 9 H 1.08001 * 119.99958 * 314.80956 * 8 6 4 10 10 C 1.38973 * 119.99970 * 134.53697 * 8 6 4 11 11 N 1.31414 * 120.00031 * 171.55258 * 10 8 6 12 12 Si 1.86804 * 120.00080 * 351.55793 * 10 8 6 13 13 H 1.48492 * 109.47409 * 85.45430 * 12 10 8 14 14 H 1.48503 * 109.46888 * 205.45949 * 12 10 8 15 15 H 1.48501 * 109.46772 * 325.45498 * 12 10 8 16 16 C 1.41316 * 107.15700 * 180.24606 * 3 2 1 17 17 N 1.30450 * 108.02728 * 359.55320 * 16 3 2 18 18 N 1.34281 * 126.29936 * 179.97438 * 2 1 3 19 19 C 1.46502 * 125.74910 * 359.97438 * 18 2 1 20 20 C 1.54273 * 110.02808 * 237.90422 * 19 18 2 21 21 C 1.54968 * 104.15935 * 217.13841 * 20 19 18 22 22 C 1.54893 * 102.77678 * 37.88736 * 21 20 19 23 23 C 1.53873 * 110.03132 * 120.69407 * 19 18 2 24 24 H 1.09004 * 109.47472 * 90.02595 * 1 2 3 25 25 H 1.09003 * 109.47190 * 210.02478 * 1 2 3 26 26 H 1.09005 * 109.47527 * 330.02109 * 1 2 3 27 27 H 1.09002 * 109.47524 * 178.39038 * 7 6 4 28 28 H 1.09003 * 109.47522 * 298.39765 * 7 6 4 29 29 H 1.09004 * 109.47319 * 58.39154 * 7 6 4 30 30 H 0.97007 * 120.00026 * 179.97438 * 11 10 8 31 31 H 1.08001 * 125.98941 * 179.71529 * 16 3 2 32 32 H 1.08995 * 110.02082 * 359.30060 * 19 18 2 33 33 H 1.08995 * 110.48902 * 335.78718 * 20 19 18 34 34 H 1.08997 * 110.48150 * 98.42985 * 20 19 18 35 35 H 1.09009 * 110.71909 * 279.57794 * 21 20 19 36 36 H 1.08991 * 110.76556 * 156.22830 * 21 20 19 37 37 H 1.08999 * 110.48577 * 203.40156 * 22 21 20 38 38 H 1.09005 * 110.59098 * 80.82111 * 22 21 20 39 39 H 1.09008 * 110.02926 * 238.56709 * 23 19 18 40 40 H 1.08994 * 110.03514 * 359.94321 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.1131 0.0000 4 6 1.8868 2.5202 -0.0005 5 8 0.7065 2.7898 -0.1174 6 7 2.7942 3.5083 0.1285 7 6 2.3768 4.9070 0.0042 8 6 4.1068 3.2046 0.3759 9 1 4.3588 2.4655 1.1220 10 6 5.1142 3.8437 -0.3370 11 7 6.3709 3.6790 0.0102 12 14 4.6818 4.9368 -1.7888 13 1 4.3674 6.3042 -1.3025 14 1 5.8340 4.9966 -2.7238 15 1 3.5003 4.3785 -2.4941 16 6 3.6596 0.6498 -0.0058 17 7 3.6343 -0.6545 0.0006 18 7 2.3020 -1.0822 0.0005 19 6 1.8504 -2.4759 0.0016 20 6 2.4207 -3.2150 1.2299 21 6 2.7374 -4.6376 0.7029 22 6 3.2694 -4.3631 -0.7256 23 6 2.3895 -3.2057 -1.2412 24 1 -0.3634 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 3.2358 5.5583 0.1657 28 1 1.9732 5.0785 -0.9937 29 1 1.6106 5.1250 0.7483 30 1 7.0740 4.1248 -0.4877 31 1 4.5456 1.2673 -0.0116 32 1 0.7613 -2.5153 0.0146 33 1 3.3300 -2.7271 1.5805 34 1 1.6786 -3.2591 2.0270 35 1 1.8336 -5.2461 0.6682 36 1 3.5025 -5.1149 1.3151 37 1 3.1467 -5.2450 -1.3544 38 1 4.3164 -4.0614 -0.6934 39 1 1.5619 -3.5999 -1.8310 40 1 2.9863 -2.5227 -1.8457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253831985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:42 Heat of formation + Delta-G solvation = 44.312382 kcal Electronic energy + Delta-G solvation = -22171.249373 eV Core-core repulsion = 18987.845311 eV Total energy + Delta-G solvation = -3183.404061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83357 -38.44508 -37.50792 -34.87992 -32.34631 -31.91705 -31.06246 -28.83754 -28.01205 -26.75038 -25.88663 -24.67605 -21.66245 -21.09512 -20.74968 -18.85181 -18.70428 -17.16278 -16.52635 -15.98681 -15.29893 -14.81584 -14.72833 -14.52018 -13.95954 -13.83142 -13.43582 -13.13290 -12.69060 -12.51965 -12.42979 -12.30062 -12.00914 -11.83451 -11.55423 -11.48159 -11.40631 -11.24876 -11.21537 -10.88452 -10.72277 -10.66918 -10.24725 -10.00645 -9.98295 -9.10194 -8.61729 -8.58987 -7.84476 -7.55390 -6.44375 -4.16002 2.23722 2.90981 3.08617 3.17593 3.28287 3.32329 4.14817 4.35646 4.45880 4.49223 4.61041 4.73701 4.99604 5.06515 5.15251 5.26287 5.34320 5.37350 5.46544 5.52223 5.71379 5.76837 5.88223 5.90313 5.97037 6.08588 6.12902 6.14462 6.24671 6.31712 6.36059 6.38510 6.53382 6.57111 6.82899 7.40805 7.54904 7.56765 8.10226 8.24772 8.43335 8.98358 9.39923 9.76025 10.63745 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.005469 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.894568 B = 5118.825915 C = 5825.743195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.120 3.880 3 C -0.257 4.257 4 C 0.561 3.439 5 O -0.604 6.604 6 N -0.471 5.471 7 C 0.075 3.925 8 C -0.342 4.342 9 H 0.111 0.889 10 C 0.063 3.937 11 N -0.868 5.868 12 Si 0.888 3.112 13 H -0.273 1.273 14 H -0.289 1.289 15 H -0.263 1.263 16 C 0.095 3.905 17 N -0.320 5.320 18 N -0.369 5.369 19 C 0.157 3.843 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.276 0.724 31 H 0.226 0.774 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -12.564 -0.653 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.272 4.272 4 C 0.352 3.648 5 O -0.491 6.491 6 N -0.192 5.192 7 C -0.068 4.068 8 C -0.469 4.469 9 H 0.128 0.872 10 C -0.144 4.144 11 N -0.504 5.504 12 Si 0.715 3.285 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.187 1.187 16 C -0.091 4.091 17 N -0.140 5.140 18 N -0.149 5.149 19 C 0.055 3.945 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.169 4.169 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.774 -13.551 -0.737 15.168 hybrid contribution -0.374 1.454 -0.743 1.675 sum -7.148 -12.097 -1.480 14.129 Atomic orbital electron populations 1.20493 0.87326 1.03544 1.03143 1.21354 0.94221 0.86945 0.98570 1.20001 0.92916 0.93283 1.20959 1.17357 0.84856 0.84232 0.78382 1.90564 1.17487 1.84696 1.56337 1.43369 1.08381 1.03180 1.64232 1.21797 1.00050 0.84787 1.00149 1.19223 0.79207 1.27130 1.21351 0.87194 1.25505 0.94871 0.97042 0.96963 1.69665 0.99348 1.42028 1.39331 0.86788 0.78328 0.80774 0.82635 1.19890 1.21605 1.18748 1.25742 0.99743 0.90402 0.93190 1.77162 0.95242 1.14336 1.27219 1.48540 1.04664 1.04676 1.57061 1.21901 0.98688 0.77336 0.96594 1.22754 1.02361 0.95570 0.96350 1.22465 1.00877 0.96074 0.96461 1.22309 1.00127 0.97373 0.95943 1.22477 0.99957 0.97799 0.96706 0.90585 0.92416 0.88074 0.90905 0.93933 0.93025 0.91324 0.75795 0.88352 0.89530 0.91222 0.91442 0.91134 0.91628 0.90949 0.91129 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.35 36.01 0.34 -1.01 16 2 C 0.12 2.30 7.01 -81.57 -0.57 1.73 16 3 C -0.26 -5.82 6.00 -105.07 -0.63 -6.45 16 4 C 0.56 13.83 7.62 -12.55 -0.10 13.74 16 5 O -0.60 -15.31 14.94 5.25 0.08 -15.23 16 6 N -0.47 -11.68 2.51 -123.44 -0.31 -11.99 16 7 C 0.08 1.68 7.88 59.84 0.47 2.15 16 8 C -0.34 -8.78 6.75 -14.98 -0.10 -8.88 16 9 H 0.11 2.97 6.20 -52.49 -0.33 2.64 16 10 C 0.06 1.64 5.31 -17.46 -0.09 1.55 16 11 N -0.87 -23.33 13.96 55.50 0.77 -22.55 16 12 Si 0.89 20.55 24.57 -169.99 -4.18 16.37 16 13 H -0.27 -6.01 6.68 56.52 0.38 -5.63 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.26 -6.30 6.94 56.52 0.39 -5.91 16 16 C 0.10 2.14 10.12 -16.97 -0.17 1.97 16 17 N -0.32 -6.56 11.92 30.87 0.37 -6.19 16 18 N -0.37 -6.49 3.18 -49.06 -0.16 -6.64 16 19 C 0.16 2.04 3.67 -66.81 -0.25 1.80 16 20 C -0.13 -1.55 6.52 -25.03 -0.16 -1.72 16 21 C -0.12 -1.13 6.91 -24.69 -0.17 -1.30 16 22 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 23 C -0.13 -1.55 6.54 -25.62 -0.17 -1.71 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 0.69 7.07 -51.93 -0.37 0.33 16 26 H 0.10 1.76 6.65 -51.93 -0.35 1.41 16 27 H 0.07 1.58 5.43 -51.93 -0.28 1.30 16 28 H 0.04 0.92 7.26 -51.93 -0.38 0.55 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.28 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.23 5.44 5.03 -52.49 -0.26 5.18 16 32 H 0.10 1.07 6.67 -51.93 -0.35 0.72 16 33 H 0.09 1.25 7.70 -51.93 -0.40 0.85 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -29.60 315.61 -6.10 -35.71 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.66 Total: 5.30 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.77 Total: 0.46 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.68 Total: -47.37 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.23 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.18 Total: 16.37 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.60 -6.10 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253831985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.019 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds