Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38103 * 126.29559 * 2 1 4 4 C 1.47361 * 126.42360 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99764 * 353.65480 * 4 3 2 6 6 N 1.34774 * 120.00198 * 173.65495 * 4 3 2 7 7 C 1.46494 * 120.00286 * 174.35059 * 6 4 3 8 8 C 1.36983 * 119.99764 * 354.34995 * 6 4 3 9 9 H 1.08001 * 119.99958 * 314.80956 * 8 6 4 10 10 C 1.38973 * 119.99970 * 134.53697 * 8 6 4 11 11 N 1.31414 * 120.00031 * 171.55258 * 10 8 6 12 12 Si 1.86804 * 120.00080 * 351.55793 * 10 8 6 13 13 H 1.48492 * 109.47409 * 85.45430 * 12 10 8 14 14 H 1.48503 * 109.46888 * 205.45949 * 12 10 8 15 15 H 1.48501 * 109.46772 * 325.45498 * 12 10 8 16 16 C 1.41316 * 107.15700 * 180.24606 * 3 2 1 17 17 N 1.30450 * 108.02728 * 359.55320 * 16 3 2 18 18 N 1.34281 * 126.29936 * 179.97438 * 2 1 3 19 19 C 1.46502 * 125.74910 * 359.97438 * 18 2 1 20 20 C 1.54273 * 110.02808 * 237.90422 * 19 18 2 21 21 C 1.54968 * 104.15935 * 217.13841 * 20 19 18 22 22 C 1.54893 * 102.77678 * 37.88736 * 21 20 19 23 23 C 1.53873 * 110.03132 * 120.69407 * 19 18 2 24 24 H 1.09004 * 109.47472 * 90.02595 * 1 2 3 25 25 H 1.09003 * 109.47190 * 210.02478 * 1 2 3 26 26 H 1.09005 * 109.47527 * 330.02109 * 1 2 3 27 27 H 1.09002 * 109.47524 * 178.39038 * 7 6 4 28 28 H 1.09003 * 109.47522 * 298.39765 * 7 6 4 29 29 H 1.09004 * 109.47319 * 58.39154 * 7 6 4 30 30 H 0.97007 * 120.00026 * 179.97438 * 11 10 8 31 31 H 1.08001 * 125.98941 * 179.71529 * 16 3 2 32 32 H 1.08995 * 110.02082 * 359.30060 * 19 18 2 33 33 H 1.08995 * 110.48902 * 335.78718 * 20 19 18 34 34 H 1.08997 * 110.48150 * 98.42985 * 20 19 18 35 35 H 1.09009 * 110.71909 * 279.57794 * 21 20 19 36 36 H 1.08991 * 110.76556 * 156.22830 * 21 20 19 37 37 H 1.08999 * 110.48577 * 203.40156 * 22 21 20 38 38 H 1.09005 * 110.59098 * 80.82111 * 22 21 20 39 39 H 1.09008 * 110.02926 * 238.56709 * 23 19 18 40 40 H 1.08994 * 110.03514 * 359.94321 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.1131 0.0000 4 6 1.8868 2.5202 -0.0005 5 8 0.7065 2.7898 -0.1174 6 7 2.7942 3.5083 0.1285 7 6 2.3768 4.9070 0.0042 8 6 4.1068 3.2046 0.3759 9 1 4.3588 2.4655 1.1220 10 6 5.1142 3.8437 -0.3370 11 7 6.3709 3.6790 0.0102 12 14 4.6818 4.9368 -1.7888 13 1 4.3674 6.3042 -1.3025 14 1 5.8340 4.9966 -2.7238 15 1 3.5003 4.3785 -2.4941 16 6 3.6596 0.6498 -0.0058 17 7 3.6343 -0.6545 0.0006 18 7 2.3020 -1.0822 0.0005 19 6 1.8504 -2.4759 0.0016 20 6 2.4207 -3.2150 1.2299 21 6 2.7374 -4.6376 0.7029 22 6 3.2694 -4.3631 -0.7256 23 6 2.3895 -3.2057 -1.2412 24 1 -0.3634 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 3.2358 5.5583 0.1657 28 1 1.9732 5.0785 -0.9937 29 1 1.6106 5.1250 0.7483 30 1 7.0740 4.1248 -0.4877 31 1 4.5456 1.2673 -0.0116 32 1 0.7613 -2.5153 0.0146 33 1 3.3300 -2.7271 1.5805 34 1 1.6786 -3.2591 2.0270 35 1 1.8336 -5.2461 0.6682 36 1 3.5025 -5.1149 1.3151 37 1 3.1467 -5.2450 -1.3544 38 1 4.3164 -4.0614 -0.6934 39 1 1.5619 -3.5999 -1.8310 40 1 2.9863 -2.5227 -1.8457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253831985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = 26.201471 kcal Electronic energy + Delta-G solvation = -22172.034721 eV Core-core repulsion = 18987.845311 eV Total energy + Delta-G solvation = -3184.189409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.37502 -40.16682 -38.64864 -36.80712 -33.92807 -33.74793 -32.47843 -29.72654 -29.48945 -28.04557 -27.61925 -26.54023 -23.08589 -22.66404 -21.61386 -20.56577 -20.15160 -18.95401 -17.98317 -17.46384 -16.68913 -16.47942 -16.24300 -15.88636 -15.61801 -15.45223 -14.71659 -14.41958 -14.34035 -14.15157 -13.91441 -13.79330 -13.62454 -13.41216 -13.01917 -12.85450 -12.63493 -12.53282 -12.10408 -12.09970 -12.01228 -11.91457 -11.89023 -11.52391 -11.49123 -11.03007 -10.48664 -10.11106 -9.66986 -9.30775 -8.44722 -6.18875 0.68021 1.24763 1.32392 1.45057 1.46203 1.56332 2.22238 2.60593 2.78237 3.04486 3.44476 3.55828 3.70536 3.86069 4.06287 4.19970 4.27422 4.34303 4.45634 4.46019 4.55284 4.58328 4.64727 4.71246 4.73056 4.81133 4.86489 4.87953 4.98336 5.00874 5.15897 5.19490 5.24099 5.29267 5.44390 5.49074 5.78097 6.07600 6.18800 6.28109 6.79688 6.99190 7.44286 7.82548 8.66591 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.005469 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.894568 B = 5118.825915 C = 5825.743195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.135 3.865 3 C -0.303 4.303 4 C 0.555 3.445 5 O -0.615 6.615 6 N -0.485 5.485 7 C 0.072 3.928 8 C -0.333 4.333 9 H 0.086 0.914 10 C 0.030 3.970 11 N -0.902 5.902 12 Si 0.935 3.065 13 H -0.249 1.249 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.081 3.919 17 N -0.330 5.330 18 N -0.352 5.352 19 C 0.140 3.860 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.129 4.129 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.280 0.720 31 H 0.200 0.800 32 H 0.134 0.866 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 -14.452 -1.143 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.002 3.998 3 C -0.317 4.317 4 C 0.347 3.653 5 O -0.503 6.503 6 N -0.206 5.206 7 C -0.070 4.070 8 C -0.461 4.461 9 H 0.103 0.897 10 C -0.174 4.174 11 N -0.540 5.540 12 Si 0.760 3.240 13 H -0.174 1.174 14 H -0.214 1.214 15 H -0.201 1.201 16 C -0.105 4.105 17 N -0.150 5.150 18 N -0.132 5.132 19 C 0.040 3.960 20 C -0.171 4.171 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.168 4.168 24 H 0.110 0.890 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.216 0.784 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.110 -15.450 -1.215 17.977 hybrid contribution 0.293 1.859 -0.553 1.962 sum -8.817 -13.591 -1.768 16.296 Atomic orbital electron populations 1.20598 0.84209 1.04783 1.04472 1.21873 0.95911 0.86157 0.95887 1.20080 0.93584 0.93507 1.24505 1.17705 0.84739 0.85091 0.77770 1.90529 1.17644 1.85142 1.56997 1.43515 1.08005 1.04333 1.64719 1.21887 1.00630 0.83575 1.00914 1.18992 0.79961 1.26501 1.20662 0.89699 1.25975 0.94574 0.98222 0.98669 1.69735 1.00153 1.43448 1.40628 0.86043 0.77476 0.80485 0.79963 1.17372 1.21354 1.20068 1.25259 0.99259 0.91111 0.94832 1.77073 0.97445 1.13266 1.27197 1.48927 1.03313 1.06347 1.54611 1.22585 1.00796 0.74706 0.97885 1.22762 1.01255 0.96697 0.96389 1.22463 1.02282 0.94703 0.95324 1.22318 0.98512 0.97665 0.97222 1.22497 1.00760 0.97500 0.95998 0.88988 0.88012 0.89949 0.90460 0.93379 0.91688 0.90994 0.78423 0.84818 0.93021 0.89315 0.88493 0.90627 0.89157 0.93335 0.88044 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.31 9.35 71.24 0.67 -1.64 16 2 C 0.14 5.03 7.01 42.15 0.30 5.33 16 3 C -0.30 -13.98 6.00 -20.15 -0.12 -14.10 16 4 C 0.55 27.80 7.62 86.64 0.66 28.46 16 5 O -0.62 -31.10 14.94 -4.12 -0.06 -31.16 16 6 N -0.48 -24.47 2.51 -662.70 -1.66 -26.13 16 7 C 0.07 3.19 7.88 127.77 1.01 4.20 16 8 C -0.33 -17.80 6.75 84.06 0.57 -17.23 16 9 H 0.09 4.90 6.20 -2.91 -0.02 4.88 16 10 C 0.03 1.57 5.31 84.93 0.45 2.02 16 11 N -0.90 -50.02 13.96 21.67 0.30 -49.72 16 12 Si 0.94 42.46 24.57 68.60 1.69 44.14 16 13 H -0.25 -10.31 6.68 99.48 0.66 -9.65 16 14 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.28 -13.01 6.94 99.48 0.69 -12.32 16 16 C 0.08 3.83 10.12 85.66 0.87 4.70 16 17 N -0.33 -13.92 11.92 -56.26 -0.67 -14.59 16 18 N -0.35 -12.02 3.18 -309.14 -0.98 -13.01 16 19 C 0.14 3.22 3.67 45.72 0.17 3.39 16 20 C -0.13 -2.79 6.52 31.70 0.21 -2.58 16 21 C -0.11 -1.66 6.91 31.91 0.22 -1.44 16 22 C -0.12 -2.14 6.83 31.67 0.22 -1.93 16 23 C -0.13 -2.72 6.54 31.32 0.20 -2.51 16 24 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.10 1.93 7.07 -2.39 -0.02 1.92 16 26 H 0.08 2.70 6.65 -2.38 -0.02 2.69 16 27 H 0.08 3.29 5.43 -2.39 -0.01 3.27 16 28 H 0.05 2.04 7.26 -2.39 -0.02 2.03 16 29 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.28 14.54 8.31 -92.70 -0.77 13.77 16 31 H 0.20 10.38 5.03 -2.91 -0.01 10.37 16 32 H 0.13 2.18 6.67 -2.39 -0.02 2.17 16 33 H 0.05 1.47 7.70 -2.39 -0.02 1.45 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.05 1.29 7.83 -2.39 -0.02 1.27 16 Total: -1.00 -66.84 315.61 5.01 -61.84 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.99 Total: 21.97 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.41 Total: 6.66 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -3.02 Total: -103.45 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.06 Total: -31.16 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.69 Total: 44.14 kcal Total: -66.84 5.01 -61.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253831985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.037 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds