Wall clock time and date at job start Mon Mar 30 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38346 * 120.35098 * 2 1 4 4 N 1.31929 * 121.08067 * 179.97438 * 3 2 1 5 5 C 1.31688 * 121.88072 * 0.02971 * 4 3 2 6 6 C 1.39520 * 120.56433 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.55674 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00009 * 179.97438 * 7 6 5 9 9 N 1.34769 * 120.00013 * 359.95200 * 7 6 5 10 10 C 1.46502 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47481 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47166 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99954 * 90.00346 * 13 12 11 15 15 C 1.36931 * 120.00322 * 269.99836 * 13 12 11 16 16 H 1.07996 * 120.00024 * 23.05065 * 15 13 12 17 17 C 1.38811 * 120.00356 * 203.05264 * 15 13 12 18 18 N 1.31625 * 119.99734 * 12.92027 * 17 15 13 19 19 Si 1.86802 * 120.00379 * 192.93073 * 17 15 13 20 20 H 1.48496 * 109.47177 * 59.99099 * 19 17 15 21 21 H 1.48503 * 109.47144 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46582 * 299.99392 * 19 17 15 23 23 C 1.38356 * 120.34646 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47448 * 89.99572 * 1 2 3 25 25 H 1.09003 * 109.46784 * 209.99717 * 1 2 3 26 26 H 1.09002 * 109.46602 * 329.99311 * 1 2 3 27 27 H 1.08008 * 119.45734 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.71779 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00523 * 0.02562 * 9 7 6 30 30 H 1.08993 * 109.47265 * 300.00339 * 10 9 7 31 31 H 1.09008 * 109.46658 * 59.99994 * 10 9 7 32 32 H 1.09002 * 109.47176 * 300.00152 * 11 10 9 33 33 H 1.09000 * 109.47412 * 60.00077 * 11 10 9 34 34 H 1.09002 * 109.46855 * 300.00123 * 12 11 10 35 35 H 1.09000 * 109.46919 * 59.99549 * 12 11 10 36 36 H 1.08996 * 109.47385 * 95.11810 * 14 13 12 37 37 H 1.08991 * 109.47468 * 215.12440 * 14 13 12 38 38 H 1.09005 * 109.46521 * 335.12095 * 14 13 12 39 39 H 0.97002 * 119.99832 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.85938 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2107 0.0005 5 6 4.2350 0.1014 0.0004 6 6 3.6054 -1.1437 -0.0007 7 6 4.4023 -2.3890 -0.0002 8 8 3.8433 -3.4683 -0.0007 9 7 5.7486 -2.3274 0.0004 10 6 6.5383 -3.5614 0.0015 11 6 8.0282 -3.2134 0.0013 12 6 8.8530 -4.5021 0.0018 13 7 10.2795 -4.1689 0.0011 14 6 10.9933 -4.0015 1.2694 15 6 10.9459 -4.0139 -1.1851 16 1 10.3994 -3.7660 -2.0830 17 6 12.3237 -4.1754 -1.2335 18 7 12.9585 -4.7200 -0.2172 19 14 13.2769 -3.6197 -2.7409 20 1 13.0793 -2.1618 -2.9418 21 1 14.7218 -3.9006 -2.5441 22 1 12.7874 -4.3549 -3.9348 23 6 2.2061 -1.1940 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 1.6630 2.1274 -0.0004 28 1 5.3136 0.1559 0.0005 29 1 6.1948 -1.4661 0.0009 30 1 6.3010 -4.1439 0.8916 31 1 6.3017 -4.1449 -0.8884 32 1 8.2652 -2.6311 -0.8891 33 1 8.2651 -2.6297 0.8909 34 1 8.6160 -5.0848 0.8920 35 1 8.6160 -5.0855 -0.8879 36 1 11.4805 -4.9387 1.5386 37 1 11.7445 -3.2190 1.1632 38 1 10.2859 -3.7224 2.0503 39 1 13.9214 -4.8325 -0.2509 40 1 1.6859 -2.1405 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265819454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:13 Heat of formation + Delta-G solvation = 11.203878 kcal Electronic energy + Delta-G solvation = -20303.578313 eV Core-core repulsion = 17118.738559 eV Total energy + Delta-G solvation = -3184.839754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90281 -39.18953 -36.31111 -34.91908 -34.01390 -32.72138 -31.78633 -29.91961 -27.71019 -26.14594 -25.69423 -24.13499 -23.07031 -21.93385 -20.81393 -20.01352 -17.96006 -17.19262 -16.79236 -16.66812 -15.63732 -15.54937 -14.90386 -14.73378 -14.43484 -14.05276 -13.70428 -13.46884 -13.28364 -13.14227 -13.00177 -12.90306 -12.70883 -12.29654 -11.73997 -11.46439 -11.04036 -10.81557 -10.78550 -10.51641 -10.39647 -10.19735 -10.13243 -9.86410 -9.82207 -9.70406 -9.38582 -9.04986 -8.54183 -6.74228 -5.71704 -3.19063 0.32250 0.82970 2.67450 3.03161 3.38962 3.44276 3.45109 3.53419 3.94489 4.31188 4.44405 4.49584 4.52703 4.57523 4.77651 5.06008 5.14635 5.23287 5.27201 5.41604 5.43366 5.52548 5.67719 5.76426 5.80094 5.88401 6.07221 6.12014 6.19829 6.39436 6.47753 6.74059 6.74784 6.92349 7.37389 7.39153 7.49521 7.73487 7.80699 8.06228 8.40764 9.24430 9.87959 10.36989 11.33062 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.002766 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.169554 B =10120.987362 C =10504.738205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.147 4.147 3 C 0.118 3.882 4 N -0.483 5.483 5 C 0.128 3.872 6 C -0.179 4.179 7 C 0.559 3.441 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.120 3.880 11 C -0.152 4.152 12 C 0.156 3.844 13 N -0.603 5.603 14 C 0.162 3.838 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.283 1.283 23 C -0.020 4.020 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.400 0.600 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.040 0.960 38 H -0.003 1.003 39 H 0.253 0.747 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.495 10.467 1.998 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.039 4.039 4 N -0.190 5.190 5 C -0.031 4.031 6 C -0.184 4.184 7 C 0.344 3.656 8 O -0.416 6.416 9 N -0.369 5.369 10 C -0.003 4.003 11 C -0.193 4.193 12 C 0.027 3.973 13 N -0.326 5.326 14 C 0.017 3.983 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.553 5.553 19 Si 0.735 3.265 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.047 4.047 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.235 0.765 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.063 0.937 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.199 10.421 2.035 24.608 hybrid contribution 0.504 -0.033 -0.796 0.943 sum -21.694 10.388 1.239 24.085 Atomic orbital electron populations 1.20740 0.89570 1.03467 1.02937 1.20957 0.98062 0.93754 1.02073 1.22921 0.89943 0.97712 0.93362 1.67708 1.08050 1.30955 1.12315 1.23017 1.00417 0.86814 0.92832 1.21090 0.95236 0.94975 1.07094 1.18039 0.82377 0.88272 0.76892 1.90779 1.71181 1.29628 1.49996 1.46079 1.05640 1.10969 1.74236 1.21530 0.91170 0.85392 1.02252 1.22558 0.91469 1.02819 1.02421 1.20590 0.84985 0.92289 0.99420 1.43887 1.03794 1.81533 1.03341 1.20793 0.93025 1.00081 0.84369 1.19132 0.90088 1.41504 0.87880 0.91490 1.25042 0.97525 0.99563 0.97597 1.70064 1.08093 1.46021 1.31111 0.86332 0.79013 0.78606 0.82554 1.21108 1.21633 1.20918 1.21653 0.92490 0.99041 0.91476 0.90603 0.90972 0.90900 0.82294 0.82259 0.76490 0.91461 0.91309 0.91439 0.92115 0.94369 0.93235 0.95068 0.94150 0.98399 0.93697 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.03 36.01 0.36 -0.17 16 2 C -0.15 -1.15 5.89 -104.54 -0.62 -1.77 16 3 C 0.12 0.97 10.85 -17.47 -0.19 0.78 16 4 N -0.48 -5.05 10.35 -12.91 -0.13 -5.18 16 5 C 0.13 1.29 10.71 -17.14 -0.18 1.11 16 6 C -0.18 -1.99 5.89 -104.82 -0.62 -2.61 16 7 C 0.56 7.50 7.78 -12.33 -0.10 7.40 16 8 O -0.54 -8.99 16.42 5.32 0.09 -8.90 16 9 N -0.72 -8.83 5.51 -61.25 -0.34 -9.17 16 10 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 11 C -0.15 -2.44 5.65 -26.73 -0.15 -2.59 16 12 C 0.16 3.09 5.64 -4.04 -0.02 3.07 16 13 N -0.60 -15.07 2.92 -181.12 -0.53 -15.59 16 14 C 0.16 3.98 8.98 59.85 0.54 4.52 16 15 C -0.26 -7.01 9.65 -15.06 -0.15 -7.16 16 16 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 17 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 18 N -0.91 -26.61 10.71 55.49 0.59 -26.02 16 19 Si 0.91 21.83 29.57 -169.99 -5.03 16.80 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.02 -0.20 9.39 -38.87 -0.37 -0.56 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 27 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 28 H 0.16 1.28 6.42 -52.49 -0.34 0.94 16 29 H 0.40 3.98 6.54 -40.82 -0.27 3.71 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 36 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 37 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 38 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.15 1.40 7.74 -52.48 -0.41 0.99 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -33.06 338.71 -7.79 -40.86 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.95 Total: -1.53 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.60 Total: 3.63 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.41 Total: -55.96 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.06 -7.79 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265819454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.061 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds