Wall clock time and date at job start Mon Mar 30 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38346 * 120.35098 * 2 1 4 4 N 1.31929 * 121.08067 * 179.97438 * 3 2 1 5 5 C 1.31688 * 121.88072 * 0.02971 * 4 3 2 6 6 C 1.39520 * 120.56433 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.55674 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00009 * 179.97438 * 7 6 5 9 9 N 1.34769 * 120.00013 * 359.95200 * 7 6 5 10 10 C 1.46502 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47481 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47166 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99954 * 90.00346 * 13 12 11 15 15 C 1.36931 * 120.00322 * 269.99836 * 13 12 11 16 16 H 1.07996 * 120.00024 * 23.05065 * 15 13 12 17 17 C 1.38811 * 120.00356 * 203.05264 * 15 13 12 18 18 N 1.31625 * 119.99734 * 12.92027 * 17 15 13 19 19 Si 1.86802 * 120.00379 * 192.93073 * 17 15 13 20 20 H 1.48496 * 109.47177 * 59.99099 * 19 17 15 21 21 H 1.48503 * 109.47144 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46582 * 299.99392 * 19 17 15 23 23 C 1.38356 * 120.34646 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47448 * 89.99572 * 1 2 3 25 25 H 1.09003 * 109.46784 * 209.99717 * 1 2 3 26 26 H 1.09002 * 109.46602 * 329.99311 * 1 2 3 27 27 H 1.08008 * 119.45734 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.71779 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00523 * 0.02562 * 9 7 6 30 30 H 1.08993 * 109.47265 * 300.00339 * 10 9 7 31 31 H 1.09008 * 109.46658 * 59.99994 * 10 9 7 32 32 H 1.09002 * 109.47176 * 300.00152 * 11 10 9 33 33 H 1.09000 * 109.47412 * 60.00077 * 11 10 9 34 34 H 1.09002 * 109.46855 * 300.00123 * 12 11 10 35 35 H 1.09000 * 109.46919 * 59.99549 * 12 11 10 36 36 H 1.08996 * 109.47385 * 95.11810 * 14 13 12 37 37 H 1.08991 * 109.47468 * 215.12440 * 14 13 12 38 38 H 1.09005 * 109.46521 * 335.12095 * 14 13 12 39 39 H 0.97002 * 119.99832 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.85938 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2107 0.0005 5 6 4.2350 0.1014 0.0004 6 6 3.6054 -1.1437 -0.0007 7 6 4.4023 -2.3890 -0.0002 8 8 3.8433 -3.4683 -0.0007 9 7 5.7486 -2.3274 0.0004 10 6 6.5383 -3.5614 0.0015 11 6 8.0282 -3.2134 0.0013 12 6 8.8530 -4.5021 0.0018 13 7 10.2795 -4.1689 0.0011 14 6 10.9933 -4.0015 1.2694 15 6 10.9459 -4.0139 -1.1851 16 1 10.3994 -3.7660 -2.0830 17 6 12.3237 -4.1754 -1.2335 18 7 12.9585 -4.7200 -0.2172 19 14 13.2769 -3.6197 -2.7409 20 1 13.0793 -2.1618 -2.9418 21 1 14.7218 -3.9006 -2.5441 22 1 12.7874 -4.3549 -3.9348 23 6 2.2061 -1.1940 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 1.6630 2.1274 -0.0004 28 1 5.3136 0.1559 0.0005 29 1 6.1948 -1.4661 0.0009 30 1 6.3010 -4.1439 0.8916 31 1 6.3017 -4.1449 -0.8884 32 1 8.2652 -2.6311 -0.8891 33 1 8.2651 -2.6297 0.8909 34 1 8.6160 -5.0848 0.8920 35 1 8.6160 -5.0855 -0.8879 36 1 11.4805 -4.9387 1.5386 37 1 11.7445 -3.2190 1.1632 38 1 10.2859 -3.7224 2.0503 39 1 13.9214 -4.8325 -0.2509 40 1 1.6859 -2.1405 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265819454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:12 Heat of formation + Delta-G solvation = -10.425488 kcal Electronic energy + Delta-G solvation = -20304.516233 eV Core-core repulsion = 17118.738559 eV Total energy + Delta-G solvation = -3185.777674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71388 -40.16489 -37.96374 -36.30284 -34.68857 -33.94374 -33.16172 -31.49729 -28.27984 -27.94917 -27.26521 -25.27006 -23.79785 -23.39974 -22.18463 -21.27124 -18.82973 -18.72267 -17.97130 -17.56085 -16.91802 -16.78275 -16.45427 -15.79111 -15.58919 -15.21258 -14.99176 -14.64511 -14.53078 -14.32121 -14.13646 -13.62669 -13.47740 -13.37147 -13.05812 -12.82267 -12.76261 -12.63845 -12.49146 -12.31031 -12.10287 -11.84869 -11.48578 -11.41861 -10.91266 -10.62695 -10.50877 -10.23503 -9.95011 -8.77027 -7.81520 -5.31195 -0.43684 0.12823 1.47478 1.49549 1.56176 1.73846 2.01822 2.52386 2.76520 3.26365 3.31793 3.61603 3.66815 3.77690 3.81244 3.90245 4.11919 4.16658 4.26082 4.46461 4.50457 4.65659 4.74547 4.79874 4.83317 4.86809 4.92221 4.96185 5.15944 5.22413 5.24210 5.29053 5.35131 5.51066 5.57521 5.64561 5.72562 6.34000 6.40300 6.79261 7.05103 7.16556 7.88853 8.32430 9.21469 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.002766 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.169554 B =10120.987362 C =10504.738205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.118 3.882 4 N -0.503 5.503 5 C 0.125 3.875 6 C -0.195 4.195 7 C 0.560 3.440 8 O -0.577 6.577 9 N -0.710 5.710 10 C 0.131 3.869 11 C -0.129 4.129 12 C 0.150 3.850 13 N -0.621 5.621 14 C 0.175 3.825 15 C -0.262 4.262 16 H 0.072 0.928 17 C -0.057 4.057 18 N -0.941 5.941 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.276 1.276 23 C -0.033 4.033 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.191 0.809 28 H 0.175 0.825 29 H 0.412 0.588 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.003 0.997 37 H 0.015 0.985 38 H 0.033 0.967 39 H 0.248 0.752 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.382 12.278 1.595 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.038 4.038 4 N -0.211 5.211 5 C -0.033 4.033 6 C -0.200 4.200 7 C 0.348 3.652 8 O -0.458 6.458 9 N -0.361 5.361 10 C 0.007 3.993 11 C -0.170 4.170 12 C 0.023 3.977 13 N -0.345 5.345 14 C 0.030 3.970 15 C -0.392 4.392 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.588 5.588 19 Si 0.797 3.203 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.202 1.202 23 C -0.059 4.059 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.208 0.792 28 H 0.192 0.808 29 H 0.250 0.750 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.119 12.263 1.627 27.106 hybrid contribution 0.953 -0.573 -0.646 1.286 sum -23.166 11.690 0.980 25.967 Atomic orbital electron populations 1.20829 0.87189 1.04634 1.03921 1.21259 0.99666 0.92737 1.00436 1.23504 0.89484 0.99141 0.91712 1.67771 1.09235 1.30946 1.13151 1.23206 1.01217 0.86367 0.92507 1.20941 0.95597 0.94180 1.09262 1.18363 0.82462 0.88582 0.75838 1.90754 1.71874 1.31185 1.51989 1.45917 1.05444 1.11014 1.73766 1.21259 0.89983 0.86017 1.02031 1.22183 0.91961 1.00421 1.02424 1.20776 0.82862 0.94226 0.99801 1.44155 1.05659 1.81919 1.02739 1.20549 0.93225 0.97828 0.85401 1.19488 0.90523 1.40312 0.88878 0.91021 1.25833 0.98600 1.00296 1.00445 1.70236 1.07823 1.47674 1.33039 0.85313 0.77135 0.78382 0.79440 1.20309 1.22207 1.20164 1.21818 0.92289 0.99949 0.91867 0.89559 0.90716 0.88883 0.79191 0.80845 0.75000 0.91437 0.91956 0.92055 0.91464 0.93158 0.93752 0.97892 0.96640 0.94817 0.94319 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.03 71.24 0.71 -0.02 16 2 C -0.14 -1.89 5.89 -19.81 -0.12 -2.00 16 3 C 0.12 1.65 10.85 84.70 0.92 2.57 16 4 N -0.50 -9.54 10.35 -194.76 -2.01 -11.55 16 5 C 0.12 2.36 10.71 85.02 0.91 3.27 16 6 C -0.19 -4.17 5.89 -19.99 -0.12 -4.29 16 7 C 0.56 14.75 7.78 86.79 0.68 15.43 16 8 O -0.58 -19.35 16.42 -3.89 -0.06 -19.42 16 9 N -0.71 -16.63 5.51 -465.98 -2.57 -19.20 16 10 C 0.13 3.53 5.67 86.38 0.49 4.02 16 11 C -0.13 -3.96 5.65 30.59 0.17 -3.78 16 12 C 0.15 5.82 5.64 86.38 0.49 6.31 16 13 N -0.62 -30.85 2.92 -726.95 -2.12 -32.98 16 14 C 0.17 8.62 8.98 127.77 1.15 9.77 16 15 C -0.26 -14.27 9.65 84.03 0.81 -13.46 16 16 H 0.07 3.76 7.86 -2.91 -0.02 3.73 16 17 C -0.06 -3.20 5.10 84.86 0.43 -2.77 16 18 N -0.94 -56.15 10.71 21.65 0.23 -55.92 16 19 Si 0.97 45.04 29.57 68.60 2.03 47.06 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.03 -0.62 9.39 22.73 0.21 -0.41 16 24 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 25 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 26 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 27 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 28 H 0.17 2.52 6.42 -2.91 -0.02 2.50 16 29 H 0.41 7.54 6.54 -92.71 -0.61 6.93 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 36 H 0.00 0.15 7.34 -2.39 -0.02 0.13 16 37 H 0.01 0.80 7.34 -2.39 -0.02 0.78 16 38 H 0.03 1.38 8.03 -2.38 -0.02 1.36 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 40 H 0.14 2.72 7.74 -2.91 -0.02 2.69 16 Total: -1.00 -71.30 338.71 2.66 -68.64 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.43 Total: 8.73 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.74 Total: 14.63 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -6.47 Total: -119.65 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.42 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.30 2.66 -68.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265819454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.214 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds