Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34665 * 125.80202 * 2 1 4 4 H 0.96998 * 124.84812 * 0.02729 * 3 2 1 5 5 C 1.36446 * 110.29413 * 180.29595 * 3 2 1 6 6 C 1.34486 * 108.86038 * 359.74732 * 5 3 2 7 7 C 1.36776 * 125.80189 * 179.86957 * 2 1 3 8 8 C 1.47264 * 126.94297 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99553 * 359.70853 * 8 7 2 10 10 N 1.34772 * 120.00070 * 179.71106 * 8 7 2 11 11 C 1.46495 * 119.99981 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47154 * 179.72646 * 11 10 8 13 13 N 1.46504 * 109.47119 * 179.97438 * 12 11 10 14 14 C 1.36932 * 120.00060 * 270.00224 * 13 12 11 15 15 H 1.08000 * 120.00688 * 144.92384 * 14 13 12 16 16 C 1.38821 * 119.99903 * 324.91504 * 14 13 12 17 17 N 1.31619 * 119.99652 * 337.95235 * 16 14 13 18 18 Si 1.86791 * 119.99843 * 157.94992 * 16 14 13 19 19 H 1.48498 * 109.47269 * 60.00720 * 18 16 14 20 20 H 1.48504 * 109.47025 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47533 * 299.99891 * 18 16 14 22 22 C 1.46505 * 119.99969 * 89.99663 * 13 12 11 23 23 C 1.53000 * 117.49574 * 183.23914 * 22 13 12 24 24 C 1.52995 * 117.49875 * 114.57756 * 22 13 12 25 25 H 1.08994 * 109.47210 * 270.12986 * 1 2 3 26 26 H 1.08995 * 109.46869 * 30.13490 * 1 2 3 27 27 H 1.09006 * 109.46732 * 150.13157 * 1 2 3 28 28 H 1.08002 * 125.56693 * 179.73468 * 5 3 2 29 29 H 1.08003 * 126.83188 * 180.02562 * 6 5 3 30 30 H 0.97004 * 120.00120 * 359.72742 * 10 8 7 31 31 H 1.09004 * 109.47193 * 299.72231 * 11 10 8 32 32 H 1.09001 * 109.47390 * 59.72054 * 11 10 8 33 33 H 1.08998 * 109.46971 * 299.99488 * 12 11 10 34 34 H 1.08993 * 109.47254 * 60.00034 * 12 11 10 35 35 H 0.96999 * 119.99583 * 175.76345 * 17 16 14 36 36 H 1.08997 * 115.54740 * 328.90501 * 22 13 12 37 37 H 1.08994 * 117.50248 * 0.02562 * 23 22 13 38 38 H 1.08997 * 117.49351 * 145.02593 * 23 22 13 39 39 H 1.09000 * 117.50255 * 214.98318 * 24 22 13 40 40 H 1.09005 * 117.49469 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7274 -0.0066 6 6 3.6882 -0.6152 -0.0054 7 6 2.3071 -1.1093 0.0025 8 6 1.8703 -2.5157 0.0063 9 8 0.6840 -2.7839 0.0127 10 7 2.7850 -3.5054 0.0025 11 6 2.3504 -4.9044 0.0057 12 6 3.5766 -5.8194 -0.0065 13 7 3.1420 -7.2185 -0.0027 14 6 2.9504 -7.8727 1.1849 15 1 2.1612 -8.6042 1.2773 16 6 3.7706 -7.5959 2.2701 17 7 4.9605 -7.0673 2.0776 18 14 3.1854 -7.9733 4.0033 19 1 2.9065 -9.4267 4.1262 20 1 4.2385 -7.5870 4.9765 21 1 1.9459 -7.2058 4.2855 22 6 2.9124 -7.9176 -1.2695 23 6 2.3869 -9.3528 -1.1992 24 6 3.8379 -9.0878 -1.6085 25 1 -0.3633 0.0023 1.0276 26 1 -0.3633 0.8887 -0.5159 27 1 -0.3633 -0.8912 -0.5118 28 1 4.4497 1.4060 -0.0121 29 1 4.5890 -1.2109 -0.0091 30 1 3.7311 -3.2915 -0.0066 31 1 1.7604 -5.0996 0.9012 32 1 1.7435 -5.0984 -0.8787 33 1 4.1667 -5.6243 -0.9019 34 1 4.1834 -5.6255 0.8779 35 1 5.5087 -6.8170 2.8377 36 1 2.5660 -7.2947 -2.0941 37 1 2.2117 -9.7767 -0.2104 38 1 1.6952 -9.6742 -1.9778 39 1 4.1002 -9.2349 -2.6562 40 1 4.6180 -9.3371 -0.8891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266588762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = 30.641319 kcal Electronic energy + Delta-G solvation = -21179.946748 eV Core-core repulsion = 17995.949865 eV Total energy + Delta-G solvation = -3183.996883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11615 -40.04552 -38.78389 -36.23800 -34.94519 -32.82825 -32.41389 -31.87523 -29.34767 -27.26390 -26.24264 -24.00647 -23.03449 -22.69558 -21.58678 -21.43241 -20.46227 -18.60934 -18.14287 -17.30805 -16.90647 -16.79717 -16.35809 -16.18582 -15.75962 -15.27962 -14.76084 -14.42748 -14.33869 -14.20847 -13.95935 -13.74721 -13.57141 -13.40603 -13.24183 -12.90235 -12.63508 -12.50440 -12.43322 -12.12026 -11.90099 -11.66426 -11.37109 -10.97030 -10.80923 -10.48539 -10.05607 -9.67634 -9.07975 -8.57152 -7.83144 -5.47300 0.78309 1.43681 1.47411 1.53333 1.57714 2.17746 2.46712 2.61419 2.64161 3.14699 3.41162 3.59879 3.95421 4.09954 4.30387 4.31652 4.32544 4.38880 4.45341 4.54104 4.63748 4.69452 4.73026 4.82230 4.94938 5.01435 5.04717 5.09051 5.23898 5.30663 5.36767 5.55260 5.56269 5.68199 5.77401 5.81754 6.01098 6.42863 6.68084 6.80423 7.12046 7.42722 7.81301 8.30913 9.08732 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.004304 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.457650 B = 6504.743295 C = 7078.092266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.098 3.902 3 N -0.536 5.536 4 H 0.434 0.566 5 C 0.002 3.998 6 C -0.192 4.192 7 C -0.272 4.272 8 C 0.577 3.423 9 O -0.598 6.598 10 N -0.711 5.711 11 C 0.125 3.875 12 C 0.145 3.855 13 N -0.565 5.565 14 C -0.265 4.265 15 H 0.060 0.940 16 C -0.031 4.031 17 N -0.908 5.908 18 Si 0.949 3.051 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.286 1.286 22 C 0.097 3.903 23 C -0.183 4.183 24 C -0.210 4.210 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.211 0.789 29 H 0.153 0.847 30 H 0.408 0.592 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 17.564 -6.283 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.021 4.021 3 N -0.134 5.134 4 H 0.275 0.725 5 C -0.126 4.126 6 C -0.215 4.215 7 C -0.282 4.282 8 C 0.367 3.633 9 O -0.481 6.481 10 N -0.362 5.362 11 C -0.001 4.001 12 C 0.018 3.982 13 N -0.282 5.282 14 C -0.395 4.395 15 H 0.077 0.923 16 C -0.229 4.229 17 N -0.551 5.551 18 Si 0.777 3.223 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.011 4.011 23 C -0.221 4.221 24 C -0.251 4.251 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.228 0.772 29 H 0.171 0.829 30 H 0.243 0.757 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.722 17.482 -6.142 18.729 hybrid contribution 0.229 -0.227 1.159 1.203 sum -2.493 17.256 -4.983 18.133 Atomic orbital electron populations 1.20521 0.86486 1.04286 1.03577 1.20458 0.94335 0.86068 1.01267 1.41563 1.05934 1.08563 1.57301 0.72532 1.22294 0.86473 0.96006 1.07781 1.22307 0.95039 0.95184 1.09011 1.20243 0.95494 0.91034 1.21427 1.17954 0.84939 0.85465 0.74917 1.90666 1.18249 1.85360 1.53839 1.45705 1.10200 1.05695 1.74574 1.21740 0.99189 0.80012 0.99168 1.20944 0.93066 0.82246 1.01941 1.43409 1.77579 1.06731 1.00527 1.19198 1.09504 1.21616 0.89169 0.92266 1.25681 0.94077 1.01271 1.01830 1.70121 1.08178 1.46282 1.30535 0.85636 0.77268 0.78324 0.81055 1.20001 1.21436 1.21309 1.21536 1.01827 0.87918 0.89846 1.23047 0.96914 1.00087 1.02075 1.23260 0.93004 1.08325 1.00506 0.90400 0.88534 0.90955 0.77209 0.82940 0.75671 0.95282 0.93702 0.93724 0.90096 0.93770 0.87262 0.90695 0.87154 0.87817 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.88 71.24 0.70 -1.25 16 2 C 0.10 2.34 7.17 41.78 0.30 2.64 16 3 N -0.54 -8.06 5.90 -182.72 -1.08 -9.14 16 4 H 0.43 2.93 8.96 -92.71 -0.83 2.10 16 5 C 0.00 0.03 11.89 83.12 0.99 1.02 16 6 C -0.19 -4.42 10.56 23.62 0.25 -4.17 16 7 C -0.27 -8.20 6.29 -19.04 -0.12 -8.32 16 8 C 0.58 22.18 7.81 86.62 0.68 22.86 16 9 O -0.60 -26.76 14.82 -4.11 -0.06 -26.82 16 10 N -0.71 -26.77 5.55 -466.53 -2.59 -29.36 16 11 C 0.13 5.49 6.00 86.38 0.52 6.01 16 12 C 0.14 6.71 5.45 86.38 0.47 7.19 16 13 N -0.56 -28.18 2.78 -678.03 -1.88 -30.06 16 14 C -0.26 -14.52 8.63 84.04 0.73 -13.79 16 15 H 0.06 3.28 6.55 -2.91 -0.02 3.26 16 16 C -0.03 -1.70 4.96 84.86 0.42 -1.28 16 17 N -0.91 -51.73 11.33 21.65 0.25 -51.48 16 18 Si 0.95 45.24 29.61 68.60 2.03 47.28 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 C 0.10 4.10 6.56 44.99 0.30 4.40 16 23 C -0.18 -7.09 9.80 30.62 0.30 -6.79 16 24 C -0.21 -8.36 10.36 30.62 0.32 -8.05 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 2.03 6.47 -2.38 -0.02 2.02 16 28 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 29 H 0.15 3.14 7.70 -2.91 -0.02 3.12 16 30 H 0.41 13.30 7.60 -92.71 -0.70 12.59 16 31 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 34 H 0.08 4.22 5.35 -2.39 -0.01 4.21 16 35 H 0.25 13.96 8.32 -92.71 -0.77 13.19 16 36 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.07 3.26 6.37 -2.39 -0.02 3.24 16 38 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -72.23 335.25 2.04 -70.19 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.47 Total: 28.93 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.84 Total: 0.47 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -5.31 Total: -120.05 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.23 2.04 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266588762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.833 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds