Wall clock time and date at job start Mon Mar 30 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38603 * 120.32782 * 2 1 4 4 N 1.31492 * 120.90361 * 180.02562 * 3 2 1 5 5 C 1.32740 * 121.64322 * 359.97438 * 4 3 2 6 6 C 1.48167 * 119.72334 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00045 * 256.04301 * 6 5 4 8 8 N 1.34776 * 120.00388 * 76.03178 * 6 5 4 9 9 C 1.46502 * 119.99789 * 5.07102 * 8 6 5 10 10 C 1.46499 * 120.00534 * 185.06189 * 8 6 5 11 11 C 1.53003 * 109.47264 * 270.00733 * 10 8 6 12 12 N 1.46500 * 109.47047 * 179.97438 * 11 10 8 13 13 C 1.36935 * 119.99596 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00568 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99651 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00196 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47223 * 90.00165 * 17 15 13 19 19 H 1.48507 * 109.47033 * 209.99856 * 17 15 13 20 20 H 1.48494 * 109.47271 * 329.99718 * 17 15 13 21 21 C 1.39271 * 120.55523 * 0.25017 * 5 4 3 22 22 C 1.50697 * 120.46937 * 179.72173 * 21 5 4 23 23 C 1.38586 * 120.32312 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.46919 * 90.00316 * 1 2 3 25 25 H 1.08997 * 109.47307 * 210.00379 * 1 2 3 26 26 H 1.08994 * 109.46845 * 330.00352 * 1 2 3 27 27 H 1.08000 * 119.54386 * 0.02562 * 3 2 1 28 28 H 1.09008 * 109.46572 * 265.34375 * 9 8 6 29 29 H 1.08997 * 109.47144 * 25.33924 * 9 8 6 30 30 H 1.08997 * 109.47200 * 145.34488 * 9 8 6 31 31 H 1.09006 * 109.46811 * 30.00480 * 10 8 6 32 32 H 1.08994 * 109.47153 * 150.00148 * 10 8 6 33 33 H 1.08996 * 109.46893 * 299.99754 * 11 10 8 34 34 H 1.09002 * 109.46905 * 59.99536 * 11 10 8 35 35 H 0.96996 * 120.00169 * 359.97438 * 12 11 10 36 36 H 0.96995 * 120.00212 * 180.02562 * 16 15 13 37 37 H 1.09006 * 109.46663 * 84.80860 * 22 21 5 38 38 H 1.08997 * 109.47461 * 204.81044 * 22 21 5 39 39 H 1.09003 * 109.47307 * 324.81371 * 22 21 5 40 40 H 1.07993 * 120.75837 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1963 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2295 0.0866 -0.0005 6 6 5.7097 0.1511 -0.0017 7 8 6.3270 -0.0765 -1.0233 8 7 6.3716 0.4624 1.1303 9 6 5.6365 0.6279 2.3867 10 6 7.8262 0.6351 1.1045 11 6 8.5043 -0.7083 1.3810 12 7 9.9589 -0.5356 1.3546 13 6 10.7798 -1.6087 1.5776 14 1 10.3551 -2.5823 1.7725 15 6 12.1580 -1.4450 1.5531 16 7 12.6758 -0.2585 1.3151 17 14 13.2779 -2.9089 1.8566 18 1 13.5834 -3.5747 0.5649 19 1 14.5408 -2.4442 2.4848 20 1 12.6001 -3.8715 2.7616 21 6 3.5923 -1.1519 -0.0052 22 6 4.3977 -2.4256 -0.0116 23 6 2.2067 -1.1963 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6648 2.1304 0.0004 28 1 5.4037 1.6824 2.5351 29 1 4.7109 0.0539 2.3444 30 1 6.2481 0.2708 3.2152 31 1 8.1313 1.0012 0.1242 32 1 8.1202 1.3546 1.8686 33 1 8.1992 -1.0743 2.3613 34 1 8.2102 -1.4278 0.6168 35 1 10.3404 0.3387 1.1792 36 1 13.6388 -0.1442 1.2976 37 1 4.6714 -2.6873 1.0106 38 1 3.8031 -3.2293 -0.4457 39 1 5.3012 -2.2812 -0.6040 40 1 1.6845 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266783323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:26 Heat of formation + Delta-G solvation = -14.767846 kcal Electronic energy + Delta-G solvation = -21125.831939 eV Core-core repulsion = 17939.865966 eV Total energy + Delta-G solvation = -3185.965972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.96198 -40.30318 -37.48684 -36.15125 -34.72518 -34.66210 -33.35961 -30.28842 -28.70443 -28.45562 -27.50815 -25.83365 -24.54728 -23.39191 -22.40899 -20.87681 -19.29082 -18.71984 -18.10938 -17.52654 -16.85596 -16.14769 -16.07995 -15.52128 -15.46011 -15.13490 -15.08028 -15.02641 -14.36958 -14.23705 -14.05650 -13.99887 -13.47692 -13.42674 -13.28568 -13.22847 -13.10340 -12.89280 -12.78382 -12.56267 -12.40455 -12.13538 -11.88777 -11.38873 -10.99585 -10.62291 -10.50252 -9.86390 -9.80424 -9.08604 -7.98625 -5.29933 -0.19487 0.21708 1.29860 1.45532 1.48928 1.57036 1.74894 2.54713 2.58975 3.11128 3.34643 3.55402 3.71210 3.88781 3.97250 3.99162 4.02410 4.14960 4.21090 4.23207 4.41724 4.50096 4.52350 4.57839 4.59011 4.76889 4.85571 4.88684 4.94132 5.02100 5.06294 5.13141 5.22042 5.27460 5.34850 5.45810 5.65998 6.16832 6.22452 6.76724 6.90524 7.28585 7.99291 8.25337 9.24916 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037794 B = 0.003332 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.688220 B = 8402.419285 C = 8733.555332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.109 4.109 3 C 0.085 3.915 4 N -0.478 5.478 5 C 0.062 3.938 6 C 0.572 3.428 7 O -0.572 6.572 8 N -0.595 5.595 9 C 0.082 3.918 10 C 0.121 3.879 11 C 0.151 3.849 12 N -0.743 5.743 13 C -0.251 4.251 14 H 0.075 0.925 15 C -0.074 4.074 16 N -0.969 5.969 17 Si 0.979 3.021 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.266 1.266 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.077 4.077 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.188 0.812 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.033 0.967 34 H 0.002 0.998 35 H 0.376 0.624 36 H 0.254 0.746 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.201 -0.044 2.165 30.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.074 4.074 4 N -0.188 5.188 5 C -0.076 4.076 6 C 0.359 3.641 7 O -0.451 6.451 8 N -0.327 5.327 9 C -0.059 4.059 10 C -0.002 4.002 11 C 0.024 3.976 12 N -0.386 5.386 13 C -0.382 4.382 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.619 5.619 17 Si 0.807 3.193 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.191 1.191 21 C -0.103 4.103 22 C -0.178 4.178 23 C -0.103 4.103 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.205 0.795 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.208 0.792 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -29.363 0.468 1.707 29.417 hybrid contribution 1.019 -0.896 -0.235 1.377 sum -28.345 -0.428 1.472 28.386 Atomic orbital electron populations 1.20858 0.86828 1.04938 1.03925 1.21533 0.99723 0.93041 0.96763 1.23264 0.88175 0.99735 0.96261 1.67527 1.10207 1.29654 1.11379 1.20493 0.92476 0.90812 1.03801 1.18528 0.87086 0.75415 0.83072 1.90795 1.69488 1.50638 1.34132 1.47773 1.07237 1.68025 1.09647 1.21963 0.96803 1.02922 0.84240 1.21450 0.78360 0.97516 1.02848 1.20916 0.83659 0.95520 0.97554 1.42392 1.00678 1.09275 1.86293 1.19597 0.88592 0.90168 1.39859 0.90735 1.25654 0.98204 0.99750 1.03039 1.69822 1.11149 1.23330 1.57595 0.85064 0.78069 0.78474 0.77677 1.21513 1.21665 1.19080 1.20963 0.95985 0.94788 0.98529 1.20887 0.99372 0.94198 1.03372 1.21750 0.91383 1.00432 0.96696 0.89527 0.89562 0.89398 0.79546 0.90883 0.90631 0.89277 0.92127 0.88049 0.94884 0.97960 0.79237 0.93757 0.89664 0.87920 0.93655 0.80916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.03 71.24 0.71 0.21 16 2 C -0.11 -1.39 5.91 -19.69 -0.12 -1.51 16 3 C 0.09 1.47 10.86 84.83 0.92 2.39 16 4 N -0.48 -12.52 10.29 -184.91 -1.90 -14.42 16 5 C 0.06 1.78 4.59 41.90 0.19 1.97 16 6 C 0.57 20.66 6.12 86.88 0.53 21.19 16 7 O -0.57 -25.98 16.10 -3.76 -0.06 -26.04 16 8 N -0.60 -19.27 2.87 -849.81 -2.44 -21.71 16 9 C 0.08 1.88 10.28 127.77 1.31 3.19 16 10 C 0.12 4.56 5.51 86.38 0.48 5.04 16 11 C 0.15 6.72 6.58 86.38 0.57 7.29 16 12 N -0.74 -40.50 5.60 -343.45 -1.92 -42.43 16 13 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 14 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 15 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 16 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 17 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 C -0.10 -2.26 5.93 -19.52 -0.12 -2.37 16 22 C -0.12 -2.66 9.55 71.24 0.68 -1.98 16 23 C -0.08 -1.14 9.51 22.45 0.21 -0.92 16 24 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 25 H 0.09 0.20 8.09 -2.39 -0.02 0.18 16 26 H 0.09 0.20 8.09 -2.39 -0.02 0.18 16 27 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 1.55 6.81 -2.39 -0.02 1.53 16 30 H 0.09 1.82 8.11 -2.39 -0.02 1.80 16 31 H 0.06 2.59 7.50 -2.38 -0.02 2.57 16 32 H 0.10 3.37 8.07 -2.39 -0.02 3.35 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.38 21.44 7.67 -92.71 -0.71 20.73 16 36 H 0.25 15.37 8.31 -92.71 -0.77 14.59 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.69 16 38 H 0.10 1.58 8.06 -2.39 -0.02 1.57 16 39 H 0.04 1.35 6.82 -2.39 -0.02 1.33 16 40 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -79.75 341.35 2.99 -76.76 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.33 Total: 22.60 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.69 Total: 16.68 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -5.99 Total: -139.34 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.75 2.99 -76.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266783323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.992 kcal (2) G-P(sol) polarization free energy of solvation -79.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds