Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38222 * 120.42157 * 2 1 4 4 N 1.31852 * 120.76923 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72233 * 359.70023 * 4 3 2 6 6 C 1.38178 * 120.76332 * 0.58406 * 5 4 3 7 7 C 1.50706 * 120.41807 * 179.70802 * 6 5 4 8 8 C 1.50699 * 109.46817 * 269.72421 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99713 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 10 8 7 13 13 C 1.53006 * 109.46988 * 89.99457 * 12 10 8 14 14 N 1.46500 * 109.46988 * 179.97438 * 13 12 10 15 15 C 1.36937 * 119.99977 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00368 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99763 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47183 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47152 * 119.99634 * 19 17 15 22 22 H 1.48499 * 109.46918 * 239.99584 * 19 17 15 23 23 C 1.38635 * 120.42172 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46934 * 269.97967 * 1 2 3 25 25 H 1.08994 * 109.47312 * 29.97997 * 1 2 3 26 26 H 1.09001 * 109.47111 * 149.98441 * 1 2 3 27 27 H 1.08006 * 119.61588 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.61630 * 180.31786 * 5 4 3 29 29 H 1.09000 * 109.47318 * 29.71801 * 7 6 5 30 30 H 1.09000 * 109.47161 * 149.72431 * 7 6 5 31 31 H 1.09008 * 109.46586 * 90.00528 * 11 10 8 32 32 H 1.09004 * 109.47061 * 209.99847 * 11 10 8 33 33 H 1.08998 * 109.47333 * 330.00636 * 11 10 8 34 34 H 1.08993 * 109.47349 * 209.99741 * 12 10 8 35 35 H 1.09005 * 109.47039 * 329.99916 * 12 10 8 36 36 H 1.08993 * 109.47307 * 300.00310 * 13 12 10 37 37 H 1.09005 * 109.46855 * 60.00347 * 13 12 10 38 38 H 0.97003 * 119.99788 * 0.02562 * 14 13 12 39 39 H 0.97001 * 120.00057 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.78618 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0048 6 6 3.5948 -1.1471 -0.0009 7 6 4.4027 -2.4193 -0.0013 8 6 4.6715 -2.8430 -1.4223 9 8 4.2491 -2.1773 -2.3439 10 7 5.3813 -3.9619 -1.6691 11 6 5.8920 -4.7657 -0.5558 12 6 5.6422 -4.3742 -3.0504 13 6 6.9510 -3.7447 -3.5320 14 7 7.2121 -4.1574 -4.9132 15 6 8.3356 -3.7152 -5.5592 16 1 9.0290 -3.0617 -5.0506 17 6 8.5828 -4.1059 -6.8681 18 7 7.7375 -4.9018 -7.4881 19 14 10.1150 -3.5019 -7.7495 20 1 10.8959 -2.6251 -6.8404 21 1 10.9463 -4.6653 -8.1507 22 1 9.7207 -2.7350 -8.9584 23 6 2.2090 -1.1955 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5141 27 1 1.6674 2.1276 -0.0004 28 1 5.3047 0.1286 0.0094 29 1 5.3490 -2.2490 0.5121 30 1 3.8463 -3.2032 0.5125 31 1 5.1509 -5.5157 -0.2794 32 1 6.8147 -5.2609 -0.8586 33 1 6.0903 -4.1186 0.2986 34 1 5.7228 -5.4601 -3.0964 35 1 4.8232 -4.0432 -3.6892 36 1 6.8703 -2.6587 -3.4860 37 1 7.7699 -4.0756 -2.8933 38 1 6.5892 -4.7441 -5.3701 39 1 7.9105 -5.1752 -8.4026 40 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266789076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = 8.805848 kcal Electronic energy + Delta-G solvation = -20719.518751 eV Core-core repulsion = 17534.575011 eV Total energy + Delta-G solvation = -3184.943740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64031 -39.49176 -35.96292 -34.38224 -33.77542 -33.67083 -31.41207 -29.04594 -27.70806 -27.44158 -26.24249 -23.86085 -23.22381 -21.92388 -21.13459 -19.06107 -17.24515 -17.12555 -16.96166 -16.86707 -15.94869 -15.42730 -14.56520 -14.48102 -14.33515 -13.72748 -13.50129 -13.44067 -13.25094 -13.18381 -13.04442 -12.89362 -12.80113 -12.69491 -12.34977 -12.25856 -11.60195 -11.24531 -10.99104 -10.87712 -10.67880 -10.06555 -9.95453 -9.74879 -9.58488 -9.54375 -8.91431 -8.86341 -8.52404 -6.91873 -5.74876 -3.04088 0.95587 1.16417 2.69972 3.05655 3.45377 3.51009 3.53409 3.68477 4.23860 4.49075 4.53932 4.60734 4.64839 4.79215 4.83678 4.92370 5.00665 5.11523 5.24622 5.30307 5.31390 5.49132 5.51086 5.58964 5.62708 5.67104 5.76775 5.83897 6.03145 6.03753 6.09545 6.12704 6.54134 6.58102 6.74646 6.91347 7.47205 7.72337 7.87252 8.26991 8.43682 9.54624 10.10708 10.45728 11.48152 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.003244 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.696995 B = 8628.136218 C = 9078.485830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.094 3.906 4 N -0.480 5.480 5 C 0.108 3.892 6 C -0.110 4.110 7 C -0.096 4.096 8 C 0.510 3.490 9 O -0.525 6.525 10 N -0.613 5.613 11 C 0.076 3.924 12 C 0.108 3.892 13 C 0.143 3.857 14 N -0.731 5.731 15 C -0.237 4.237 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.063 4.063 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 3.770 22.000 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.063 4.063 4 N -0.187 5.187 5 C -0.049 4.049 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.297 3.703 9 O -0.400 6.400 10 N -0.347 5.347 11 C -0.067 4.067 12 C -0.015 4.015 13 C 0.015 3.985 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.089 4.089 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.254 5.019 21.464 25.220 hybrid contribution 0.337 -0.864 -0.733 1.182 sum -11.917 4.155 20.730 24.270 Atomic orbital electron populations 1.20706 0.90239 1.03271 1.02373 1.20886 0.97537 0.94103 1.01567 1.22642 0.90019 0.97394 0.96245 1.67673 1.08343 1.31081 1.11651 1.22586 1.00223 0.87083 0.95010 1.20312 0.94290 0.95520 1.01143 1.20641 1.01581 0.95852 0.95616 1.20434 0.78392 0.80594 0.90919 1.90773 1.50622 1.52441 1.46167 1.47826 1.53850 1.25323 1.07677 1.21837 0.99981 0.95628 0.89265 1.21713 0.99647 0.99391 0.80732 1.20902 0.92977 0.97022 0.87640 1.42223 1.27129 1.58962 1.09237 1.19255 0.98907 1.23593 0.95084 0.91141 1.24754 0.98927 1.00335 0.97025 1.69672 1.37062 1.39027 1.12467 0.86090 0.82458 0.77857 0.79641 1.20528 1.21834 1.21796 1.21301 0.93244 0.98237 0.96150 0.91021 0.91137 0.91300 0.83008 0.82986 0.87566 0.87892 0.92604 0.90435 0.91190 0.90461 0.89763 0.95974 0.96450 0.78279 0.93536 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.04 36.00 0.36 -0.39 16 2 C -0.14 -1.41 5.90 -104.48 -0.62 -2.03 16 3 C 0.09 1.06 10.86 -17.55 -0.19 0.87 16 4 N -0.48 -6.48 10.36 -13.25 -0.14 -6.61 16 5 C 0.11 1.37 10.86 -17.55 -0.19 1.17 16 6 C -0.11 -1.27 4.39 -104.48 -0.46 -1.73 16 7 C -0.10 -0.92 4.41 -29.03 -0.13 -1.05 16 8 C 0.51 7.34 7.67 -10.99 -0.08 7.26 16 9 O -0.52 -10.23 15.61 5.56 0.09 -10.14 16 10 N -0.61 -8.32 2.87 -181.56 -0.52 -8.84 16 11 C 0.08 0.67 10.24 59.85 0.61 1.28 16 12 C 0.11 1.86 5.52 -4.04 -0.02 1.83 16 13 C 0.14 3.07 6.58 -4.04 -0.03 3.04 16 14 N -0.73 -19.40 5.60 -59.91 -0.34 -19.73 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 2.01 7.83 -52.49 -0.41 1.59 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 19 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 C -0.06 -0.68 9.55 -39.28 -0.37 -1.05 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.11 0.77 7.35 -51.93 -0.38 0.38 16 30 H 0.10 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.08 0.70 8.07 -51.93 -0.42 0.29 16 33 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 34 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.08 1.64 7.42 -51.93 -0.39 1.25 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 39 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -36.69 342.05 -7.43 -44.12 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.02 Total: 4.64 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.36 Total: 1.62 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.27 Total: -63.36 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.69 -7.43 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266789076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.928 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds