Wall clock time and date at job start Mon Mar 30 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38222 * 120.42157 * 2 1 4 4 N 1.31852 * 120.76923 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72233 * 359.70023 * 4 3 2 6 6 C 1.38178 * 120.76332 * 0.58406 * 5 4 3 7 7 C 1.50706 * 120.41807 * 179.70802 * 6 5 4 8 8 C 1.50699 * 109.46817 * 269.72421 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99713 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 10 8 7 13 13 C 1.53006 * 109.46988 * 89.99457 * 12 10 8 14 14 N 1.46500 * 109.46988 * 179.97438 * 13 12 10 15 15 C 1.36937 * 119.99977 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00368 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99763 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47183 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47152 * 119.99634 * 19 17 15 22 22 H 1.48499 * 109.46918 * 239.99584 * 19 17 15 23 23 C 1.38635 * 120.42172 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46934 * 269.97967 * 1 2 3 25 25 H 1.08994 * 109.47312 * 29.97997 * 1 2 3 26 26 H 1.09001 * 109.47111 * 149.98441 * 1 2 3 27 27 H 1.08006 * 119.61588 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.61630 * 180.31786 * 5 4 3 29 29 H 1.09000 * 109.47318 * 29.71801 * 7 6 5 30 30 H 1.09000 * 109.47161 * 149.72431 * 7 6 5 31 31 H 1.09008 * 109.46586 * 90.00528 * 11 10 8 32 32 H 1.09004 * 109.47061 * 209.99847 * 11 10 8 33 33 H 1.08998 * 109.47333 * 330.00636 * 11 10 8 34 34 H 1.08993 * 109.47349 * 209.99741 * 12 10 8 35 35 H 1.09005 * 109.47039 * 329.99916 * 12 10 8 36 36 H 1.08993 * 109.47307 * 300.00310 * 13 12 10 37 37 H 1.09005 * 109.46855 * 60.00347 * 13 12 10 38 38 H 0.97003 * 119.99788 * 0.02562 * 14 13 12 39 39 H 0.97001 * 120.00057 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.78618 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0048 6 6 3.5948 -1.1471 -0.0009 7 6 4.4027 -2.4193 -0.0013 8 6 4.6715 -2.8430 -1.4223 9 8 4.2491 -2.1773 -2.3439 10 7 5.3813 -3.9619 -1.6691 11 6 5.8920 -4.7657 -0.5558 12 6 5.6422 -4.3742 -3.0504 13 6 6.9510 -3.7447 -3.5320 14 7 7.2121 -4.1574 -4.9132 15 6 8.3356 -3.7152 -5.5592 16 1 9.0290 -3.0617 -5.0506 17 6 8.5828 -4.1059 -6.8681 18 7 7.7375 -4.9018 -7.4881 19 14 10.1150 -3.5019 -7.7495 20 1 10.8959 -2.6251 -6.8404 21 1 10.9463 -4.6653 -8.1507 22 1 9.7207 -2.7350 -8.9584 23 6 2.2090 -1.1955 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5141 27 1 1.6674 2.1276 -0.0004 28 1 5.3047 0.1286 0.0094 29 1 5.3490 -2.2490 0.5121 30 1 3.8463 -3.2032 0.5125 31 1 5.1509 -5.5157 -0.2794 32 1 6.8147 -5.2609 -0.8586 33 1 6.0903 -4.1186 0.2986 34 1 5.7228 -5.4601 -3.0964 35 1 4.8232 -4.0432 -3.6892 36 1 6.8703 -2.6587 -3.4860 37 1 7.7699 -4.0756 -2.8933 38 1 6.5892 -4.7441 -5.3701 39 1 7.9105 -5.1752 -8.4026 40 1 1.6888 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266789076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:09 Heat of formation + Delta-G solvation = -16.819646 kcal Electronic energy + Delta-G solvation = -20720.629956 eV Core-core repulsion = 17534.575011 eV Total energy + Delta-G solvation = -3186.054945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54403 -40.54572 -37.42092 -36.07557 -34.65625 -34.49112 -33.36142 -30.44932 -28.74219 -28.15676 -27.36537 -25.62037 -24.20064 -23.40865 -22.24581 -20.18021 -19.21460 -18.11471 -17.92089 -17.71687 -17.21506 -16.71103 -16.30134 -15.46167 -15.42078 -15.23244 -15.04711 -14.88651 -14.23562 -14.14485 -14.00187 -13.96375 -13.52194 -13.31913 -13.16903 -13.15150 -13.08715 -12.90071 -12.68770 -12.39774 -12.23272 -12.11066 -11.89515 -11.04921 -11.01179 -10.49354 -10.41094 -9.73647 -9.68023 -9.09469 -8.00645 -5.31581 0.12425 0.34009 1.44301 1.46528 1.56451 1.62404 2.00274 2.53607 2.83152 3.32730 3.46212 3.66485 3.75572 3.84127 4.04250 4.06455 4.07471 4.16673 4.22824 4.26542 4.37318 4.44646 4.55075 4.60859 4.76712 4.79538 4.83597 4.91034 4.99971 5.01568 5.08220 5.19220 5.25252 5.32818 5.40567 5.53321 5.80015 6.21200 6.42850 7.02026 7.19017 7.27158 7.98782 8.23985 9.22951 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.003244 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.696995 B = 8628.136218 C = 9078.485830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.512 5.512 5 C 0.082 3.918 6 C -0.119 4.119 7 C -0.083 4.083 8 C 0.504 3.496 9 O -0.587 6.587 10 N -0.610 5.610 11 C 0.067 3.933 12 C 0.122 3.878 13 C 0.149 3.851 14 N -0.744 5.744 15 C -0.251 4.251 16 H 0.073 0.927 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.978 3.022 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.293 1.293 23 C -0.075 4.075 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.055 0.945 36 H -0.004 1.004 37 H 0.032 0.968 38 H 0.375 0.625 39 H 0.254 0.746 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 3.104 24.077 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C -0.080 4.080 4 N -0.220 5.220 5 C -0.074 4.074 6 C -0.122 4.122 7 C -0.123 4.123 8 C 0.293 3.707 9 O -0.467 6.467 10 N -0.343 5.343 11 C -0.074 4.074 12 C -0.002 4.002 13 C 0.022 3.978 14 N -0.387 5.387 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.220 1.220 23 C -0.101 4.101 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.189 0.811 28 H 0.174 0.826 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.014 0.986 37 H 0.050 0.950 38 H 0.207 0.793 39 H 0.063 0.937 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.328 4.338 23.620 26.994 hybrid contribution 0.316 -0.637 -1.325 1.504 sum -12.012 3.701 22.294 25.593 Atomic orbital electron populations 1.20769 0.87883 1.03904 1.03743 1.21272 0.99286 0.93596 1.00061 1.23078 0.89651 0.98928 0.96357 1.67628 1.09632 1.31956 1.12777 1.22806 1.00706 0.87732 0.96198 1.20536 0.95008 0.95814 1.00795 1.20698 1.03333 0.95889 0.92358 1.21336 0.77191 0.79765 0.92378 1.90749 1.53146 1.54330 1.48452 1.47924 1.53512 1.25719 1.07155 1.22210 1.00505 0.96343 0.88334 1.21305 0.96184 0.99847 0.82868 1.20956 0.95691 0.95598 0.85601 1.42418 1.26397 1.58799 1.11130 1.19624 0.99619 1.23349 0.95666 0.90943 1.25636 1.02238 1.00864 0.97850 1.69822 1.38968 1.40351 1.12657 0.85016 0.78779 0.77455 0.78138 1.19134 1.21237 1.21989 1.21687 0.93280 0.99386 0.95757 0.89136 0.90317 0.90860 0.81073 0.82644 0.84702 0.84049 0.89970 0.90699 0.87946 0.88613 0.92627 0.98591 0.95023 0.79266 0.93740 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.04 71.23 0.72 -0.53 16 2 C -0.14 -2.69 5.90 -19.77 -0.12 -2.80 16 3 C 0.08 1.70 10.86 84.69 0.92 2.62 16 4 N -0.51 -14.04 10.36 -195.84 -2.03 -16.07 16 5 C 0.08 2.08 10.86 84.67 0.92 3.00 16 6 C -0.12 -2.60 4.39 -19.77 -0.09 -2.69 16 7 C -0.08 -1.35 4.41 29.10 0.13 -1.22 16 8 C 0.50 13.96 7.67 87.66 0.67 14.63 16 9 O -0.59 -23.44 15.61 -3.04 -0.05 -23.49 16 10 N -0.61 -15.55 2.87 -846.73 -2.43 -17.98 16 11 C 0.07 0.93 10.24 127.77 1.31 2.24 16 12 C 0.12 4.20 5.52 86.38 0.48 4.68 16 13 C 0.15 6.47 6.58 86.38 0.57 7.03 16 14 N -0.74 -40.24 5.60 -343.45 -1.92 -42.17 16 15 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 16 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 18 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 19 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 23 C -0.08 -1.50 9.55 22.47 0.21 -1.28 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.14 1.43 7.35 -2.39 -0.02 1.42 16 30 H 0.14 1.23 8.06 -2.39 -0.02 1.21 16 31 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 1.12 8.07 -2.38 -0.02 1.10 16 33 H 0.10 0.78 6.44 -2.39 -0.02 0.76 16 34 H 0.10 2.93 8.07 -2.39 -0.02 2.91 16 35 H 0.06 2.24 7.42 -2.38 -0.02 2.22 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.38 21.21 7.67 -92.71 -0.71 20.50 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -82.52 342.05 3.22 -79.29 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.32 Total: 23.54 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 7.03 Total: 7.85 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -6.10 Total: -136.64 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -82.52 3.22 -79.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266789076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.473 kcal (2) G-P(sol) polarization free energy of solvation -82.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds