Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38228 * 120.41787 * 2 1 4 4 N 1.31850 * 120.76441 * 180.02562 * 3 2 1 5 5 C 1.31893 * 121.72348 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.76334 * 359.74347 * 5 4 3 7 7 C 1.38626 * 120.41660 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.79414 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.46944 * 84.99926 * 8 7 2 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.08992 * 109.46993 * 295.00086 * 13 12 11 15 15 C 1.52995 * 109.47195 * 174.99817 * 13 12 11 16 16 N 1.46506 * 109.46943 * 54.99919 * 13 12 11 17 17 C 1.36929 * 119.99909 * 205.00011 * 16 13 12 18 18 H 1.08006 * 120.00094 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31615 * 119.99668 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47263 * 59.99982 * 21 19 17 23 23 H 1.48501 * 109.46944 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47333 * 300.00103 * 21 19 17 25 25 H 1.09000 * 109.47095 * 270.02469 * 1 2 3 26 26 H 1.09009 * 109.47311 * 30.02045 * 1 2 3 27 27 H 1.09000 * 109.47407 * 150.02207 * 1 2 3 28 28 H 1.07998 * 119.61956 * 359.97438 * 3 2 1 29 29 H 1.07993 * 119.61637 * 179.97438 * 5 4 3 30 30 H 1.08004 * 120.41882 * 180.25959 * 6 5 4 31 31 H 1.09003 * 109.46601 * 325.00366 * 8 7 2 32 32 H 1.08993 * 109.46922 * 205.00666 * 8 7 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 35 35 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 36 36 H 1.08998 * 109.47557 * 300.00470 * 15 13 12 37 37 H 1.09001 * 109.47386 * 60.00224 * 15 13 12 38 38 H 1.08998 * 109.47347 * 179.97438 * 15 13 12 39 39 H 0.97002 * 119.99781 * 25.00223 * 16 13 12 40 40 H 0.96996 * 119.99816 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 3.5948 -1.1470 0.0053 7 6 2.2089 -1.1955 0.0005 8 6 1.4831 -2.5162 0.0017 9 6 1.1321 -2.8977 -1.4133 10 8 1.4413 -2.1692 -2.3323 11 7 0.4755 -4.0491 -1.6576 12 6 0.1290 -4.4171 -3.0326 13 6 -0.6122 -5.7556 -3.0310 14 1 0.0577 -6.5414 -2.6823 15 6 -1.0832 -6.0794 -4.4502 16 7 -1.7715 -5.6707 -2.1392 17 6 -2.2817 -6.8066 -1.5696 18 1 -1.8293 -7.7651 -1.7775 19 6 -3.3804 -6.7263 -0.7250 20 7 -3.9320 -5.5584 -0.4721 21 14 -4.0760 -8.2758 0.0525 22 1 -3.0307 -8.9244 0.8843 23 1 -5.2393 -7.9225 0.9052 24 1 -4.5114 -9.2126 -1.0145 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8899 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6675 2.1277 -0.0004 29 1 5.3046 0.1286 -0.0014 30 1 4.1737 -2.0588 0.0095 31 1 0.5706 -2.4287 0.5914 32 1 2.1245 -3.2828 0.4364 33 1 0.2286 -4.6320 -0.9227 34 1 -0.5113 -3.6477 -3.4644 35 1 1.0394 -4.5067 -3.6252 36 1 -1.7531 -5.2935 -4.7990 37 1 -0.2208 -6.1426 -5.1137 38 1 -1.6109 -7.0332 -4.4491 39 1 -2.1775 -4.8098 -1.9522 40 1 -4.6995 -5.5022 0.1184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266939315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -5.161344 kcal Electronic energy + Delta-G solvation = -21103.060818 eV Core-core repulsion = 17917.511415 eV Total energy + Delta-G solvation = -3185.549403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55259 -39.15078 -36.40404 -34.33147 -33.57904 -32.45771 -31.89604 -29.22894 -28.58841 -27.17358 -25.55163 -23.71919 -22.82889 -21.78006 -20.27078 -19.88568 -17.52749 -16.81281 -16.71819 -16.63901 -15.50678 -15.22229 -15.10616 -14.63050 -14.28995 -13.93042 -13.55097 -13.40926 -13.00504 -12.82938 -12.73693 -12.65122 -12.29162 -12.14157 -12.09200 -11.82545 -11.41622 -11.35532 -10.91223 -10.80997 -10.42527 -10.09300 -9.88139 -9.77473 -9.48497 -9.36366 -9.04024 -8.88975 -8.68726 -7.10938 -5.87746 -3.18133 1.12264 1.21170 2.86132 3.35948 3.41587 3.42301 3.47315 3.86356 4.41340 4.49120 4.50810 4.67100 4.91687 4.97066 5.10690 5.28714 5.37949 5.41500 5.41991 5.43160 5.52702 5.59640 5.64163 5.79104 5.88625 5.95504 6.03909 6.10585 6.13445 6.27207 6.33542 6.51055 6.69621 6.70107 6.78229 6.98910 7.59569 7.86589 7.95121 8.29774 8.50085 9.41773 9.96143 10.32050 11.34073 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.003816 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.367922 B = 7334.930322 C = 7943.893087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.095 3.905 4 N -0.487 5.487 5 C 0.087 3.913 6 C -0.158 4.158 7 C -0.017 4.017 8 C -0.110 4.110 9 C 0.513 3.487 10 O -0.546 6.546 11 N -0.711 5.711 12 C 0.116 3.884 13 C 0.159 3.841 14 H 0.053 0.947 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 7.535 1.777 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C -0.062 4.062 4 N -0.195 5.195 5 C -0.069 4.069 6 C -0.178 4.178 7 C -0.025 4.025 8 C -0.150 4.150 9 C 0.299 3.701 10 O -0.425 6.425 11 N -0.363 5.363 12 C -0.009 4.009 13 C 0.049 3.951 14 H 0.071 0.929 15 C -0.223 4.223 16 N -0.366 5.366 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.705 8.673 1.184 15.428 hybrid contribution -1.243 -1.789 0.751 2.304 sum 11.462 6.884 1.935 13.510 Atomic orbital electron populations 1.20778 0.90104 1.03764 1.02519 1.20783 0.97659 0.93539 0.99992 1.22590 0.89888 0.97269 0.96414 1.67616 1.08366 1.31462 1.12088 1.22617 1.00115 0.87660 0.96514 1.21981 0.94374 0.99726 1.01699 1.19599 0.93457 0.93917 0.95576 1.20730 1.02688 0.95289 0.96251 1.20251 0.78159 0.81310 0.90423 1.90704 1.54225 1.51421 1.46103 1.45984 1.57305 1.22431 1.10601 1.21687 0.98885 0.97933 0.82380 1.20509 0.89958 0.93397 0.91210 0.92872 1.22362 1.00063 1.02160 0.97752 1.42463 1.32718 1.07866 1.53574 1.19179 1.09731 0.87427 1.21249 0.91174 1.24734 0.98593 0.96660 1.00561 1.69647 1.25026 1.22444 1.40682 0.86291 0.78443 0.82557 0.78984 1.21239 1.21709 1.21288 0.90670 0.91031 0.90965 0.82969 0.82997 0.85000 0.87122 0.87677 0.75258 0.91872 0.91897 0.93208 0.94204 0.92307 0.78098 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.30 36.01 0.33 -0.97 16 2 C -0.12 -1.50 5.90 -104.48 -0.62 -2.12 16 3 C 0.10 1.20 10.86 -17.55 -0.19 1.00 16 4 N -0.49 -6.53 10.36 -13.26 -0.14 -6.67 16 5 C 0.09 1.03 11.18 -17.55 -0.20 0.84 16 6 C -0.16 -1.85 9.80 -39.44 -0.39 -2.24 16 7 C -0.02 -0.22 4.41 -104.32 -0.46 -0.68 16 8 C -0.11 -1.31 5.19 -29.04 -0.15 -1.47 16 9 C 0.51 7.91 7.15 -10.99 -0.08 7.83 16 10 O -0.55 -10.27 16.03 5.55 0.09 -10.18 16 11 N -0.71 -11.09 5.39 -60.29 -0.32 -11.42 16 12 C 0.12 1.90 5.23 -4.04 -0.02 1.88 16 13 C 0.16 2.88 3.05 -67.93 -0.21 2.68 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.16 -2.76 9.49 37.16 0.35 -2.40 16 16 N -0.72 -16.38 4.56 -53.42 -0.24 -16.63 16 17 C -0.24 -6.25 9.93 -15.06 -0.15 -6.39 16 18 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 21 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.73 8.10 -51.92 -0.42 0.31 16 27 H 0.07 0.95 6.35 -51.93 -0.33 0.62 16 28 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.11 1.23 7.11 -51.93 -0.37 0.86 16 32 H 0.10 1.00 8.07 -51.93 -0.42 0.58 16 33 H 0.41 6.40 8.14 -40.82 -0.33 6.07 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.38 9.45 7.80 -40.82 -0.32 9.13 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.10 340.07 -7.62 -38.72 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.96 Total: 12.88 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.86 Total: -2.38 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.02 Total: -60.32 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.10 -7.62 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.558 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds