Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38228 * 120.41787 * 2 1 4 4 N 1.31850 * 120.76441 * 180.02562 * 3 2 1 5 5 C 1.31893 * 121.72348 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.76334 * 359.74347 * 5 4 3 7 7 C 1.38626 * 120.41660 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.79414 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.46944 * 84.99926 * 8 7 2 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.08992 * 109.46993 * 295.00086 * 13 12 11 15 15 C 1.52995 * 109.47195 * 174.99817 * 13 12 11 16 16 N 1.46506 * 109.46943 * 54.99919 * 13 12 11 17 17 C 1.36929 * 119.99909 * 205.00011 * 16 13 12 18 18 H 1.08006 * 120.00094 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31615 * 119.99668 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47263 * 59.99982 * 21 19 17 23 23 H 1.48501 * 109.46944 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47333 * 300.00103 * 21 19 17 25 25 H 1.09000 * 109.47095 * 270.02469 * 1 2 3 26 26 H 1.09009 * 109.47311 * 30.02045 * 1 2 3 27 27 H 1.09000 * 109.47407 * 150.02207 * 1 2 3 28 28 H 1.07998 * 119.61956 * 359.97438 * 3 2 1 29 29 H 1.07993 * 119.61637 * 179.97438 * 5 4 3 30 30 H 1.08004 * 120.41882 * 180.25959 * 6 5 4 31 31 H 1.09003 * 109.46601 * 325.00366 * 8 7 2 32 32 H 1.08993 * 109.46922 * 205.00666 * 8 7 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 35 35 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 36 36 H 1.08998 * 109.47557 * 300.00470 * 15 13 12 37 37 H 1.09001 * 109.47386 * 60.00224 * 15 13 12 38 38 H 1.08998 * 109.47347 * 179.97438 * 15 13 12 39 39 H 0.97002 * 119.99781 * 25.00223 * 16 13 12 40 40 H 0.96996 * 119.99816 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0823 -0.0005 6 6 3.5948 -1.1470 0.0053 7 6 2.2089 -1.1955 0.0005 8 6 1.4831 -2.5162 0.0017 9 6 1.1321 -2.8977 -1.4133 10 8 1.4413 -2.1692 -2.3323 11 7 0.4755 -4.0491 -1.6576 12 6 0.1290 -4.4171 -3.0326 13 6 -0.6122 -5.7556 -3.0310 14 1 0.0577 -6.5414 -2.6823 15 6 -1.0832 -6.0794 -4.4502 16 7 -1.7715 -5.6707 -2.1392 17 6 -2.2817 -6.8066 -1.5696 18 1 -1.8293 -7.7651 -1.7775 19 6 -3.3804 -6.7263 -0.7250 20 7 -3.9320 -5.5584 -0.4721 21 14 -4.0760 -8.2758 0.0525 22 1 -3.0307 -8.9244 0.8843 23 1 -5.2393 -7.9225 0.9052 24 1 -4.5114 -9.2126 -1.0145 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8899 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6675 2.1277 -0.0004 29 1 5.3046 0.1286 -0.0014 30 1 4.1737 -2.0588 0.0095 31 1 0.5706 -2.4287 0.5914 32 1 2.1245 -3.2828 0.4364 33 1 0.2286 -4.6320 -0.9227 34 1 -0.5113 -3.6477 -3.4644 35 1 1.0394 -4.5067 -3.6252 36 1 -1.7531 -5.2935 -4.7990 37 1 -0.2208 -6.1426 -5.1137 38 1 -1.6109 -7.0332 -4.4491 39 1 -2.1775 -4.8098 -1.9522 40 1 -4.6995 -5.5022 0.1184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266939315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -25.756155 kcal Electronic energy + Delta-G solvation = -21103.953876 eV Core-core repulsion = 17917.511415 eV Total energy + Delta-G solvation = -3186.442461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53862 -40.34328 -37.92412 -35.33735 -35.13815 -33.64890 -33.29961 -30.71270 -29.88326 -28.11311 -26.85123 -25.58663 -23.78023 -22.75346 -21.71750 -21.12926 -19.34191 -18.01878 -17.75649 -17.67320 -16.90953 -16.58146 -16.16611 -15.95515 -15.50168 -15.43249 -14.99443 -14.46693 -14.28069 -13.98748 -13.76839 -13.67339 -13.62245 -13.55652 -13.24740 -13.06159 -12.89328 -12.73172 -12.48861 -12.25427 -12.21522 -11.69974 -11.64405 -11.10147 -10.93598 -10.41528 -10.38105 -10.00371 -9.79544 -9.00916 -7.89930 -5.18734 0.22269 0.26771 1.52106 1.53313 1.59028 1.65328 2.31087 2.59437 2.90218 3.44423 3.51193 3.63436 3.80681 3.88275 3.96706 4.02487 4.06155 4.07861 4.39500 4.44080 4.51197 4.55277 4.64817 4.73905 4.74136 4.75920 4.86280 4.92477 5.06179 5.06577 5.19818 5.26396 5.41826 5.42747 5.58107 5.60917 5.81831 6.30636 6.61532 7.04087 7.26737 7.38573 8.10428 8.35435 9.32383 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.003816 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.367922 B = 7334.930322 C = 7943.893087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.132 4.132 3 C 0.084 3.916 4 N -0.509 5.509 5 C 0.079 3.921 6 C -0.161 4.161 7 C -0.035 4.035 8 C -0.102 4.102 9 C 0.515 3.485 10 O -0.582 6.582 11 N -0.710 5.710 12 C 0.125 3.875 13 C 0.160 3.840 14 H 0.061 0.939 15 C -0.156 4.156 16 N -0.731 5.731 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.301 1.301 24 H -0.285 1.285 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.171 0.829 29 H 0.179 0.821 30 H 0.156 0.844 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.412 0.588 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.373 0.627 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.464 6.730 1.985 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.134 4.134 3 C -0.073 4.073 4 N -0.217 5.217 5 C -0.077 4.077 6 C -0.181 4.181 7 C -0.043 4.043 8 C -0.141 4.141 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.362 5.362 12 C 0.000 4.000 13 C 0.051 3.949 14 H 0.079 0.921 15 C -0.217 4.217 16 N -0.372 5.372 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.260 4.260 20 N -0.615 5.615 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.228 1.228 24 H -0.211 1.211 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.188 0.812 29 H 0.196 0.804 30 H 0.173 0.827 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.205 0.795 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.111 7.839 1.372 16.200 hybrid contribution -1.585 -1.527 0.612 2.284 sum 12.526 6.312 1.984 14.166 Atomic orbital electron populations 1.20759 0.89607 1.03108 1.03322 1.20990 0.98221 0.93891 1.00267 1.22918 0.89971 0.98062 0.96338 1.67653 1.08830 1.32428 1.12828 1.23122 1.01462 0.87392 0.95758 1.22288 0.94183 1.00742 1.00849 1.19830 0.94226 0.94131 0.96149 1.20730 1.03602 0.95868 0.93930 1.20774 0.77096 0.80436 0.91482 1.90685 1.55671 1.52313 1.47586 1.45980 1.57230 1.22706 1.10244 1.21528 0.98930 0.96366 0.83175 1.20667 0.88623 0.94563 0.91005 0.92099 1.22250 1.01058 1.00962 0.97404 1.42584 1.33774 1.06579 1.54275 1.19526 1.08976 0.88409 1.19910 0.90499 1.25407 0.99613 0.98957 1.02011 1.69794 1.25593 1.24224 1.41934 0.85344 0.77499 0.79621 0.78020 1.20194 1.22791 1.21119 0.89127 0.90197 0.93023 0.81235 0.80362 0.82660 0.86378 0.84835 0.75123 0.93428 0.90357 0.94042 0.90929 0.93679 0.79470 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.30 71.24 0.66 -1.82 16 2 C -0.13 -3.27 5.90 -19.77 -0.12 -3.39 16 3 C 0.08 2.04 10.86 84.69 0.92 2.96 16 4 N -0.51 -13.15 10.36 -195.85 -2.03 -15.18 16 5 C 0.08 1.73 11.18 84.67 0.95 2.68 16 6 C -0.16 -3.48 9.80 22.36 0.22 -3.26 16 7 C -0.03 -0.85 4.41 -19.67 -0.09 -0.94 16 8 C -0.10 -2.29 5.19 29.10 0.15 -2.14 16 9 C 0.51 15.37 7.15 87.66 0.63 16.00 16 10 O -0.58 -21.58 16.03 -3.04 -0.05 -21.63 16 11 N -0.71 -21.41 5.39 -463.05 -2.49 -23.91 16 12 C 0.12 3.96 5.23 86.38 0.45 4.41 16 13 C 0.16 5.56 3.05 44.99 0.14 5.69 16 14 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 15 C -0.16 -5.03 9.49 71.98 0.68 -4.35 16 16 N -0.73 -32.71 4.56 -322.94 -1.47 -34.19 16 17 C -0.24 -11.86 9.93 84.04 0.83 -11.02 16 18 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 20 N -0.97 -55.17 13.06 21.65 0.28 -54.89 16 21 Si 0.97 43.32 29.55 68.60 2.03 45.35 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.60 8.10 -2.38 -0.02 1.59 16 27 H 0.05 1.36 6.35 -2.39 -0.02 1.35 16 28 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.12 2.48 7.11 -2.39 -0.02 2.47 16 32 H 0.13 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.41 12.37 8.14 -92.71 -0.75 11.62 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.37 18.44 7.80 -92.71 -0.72 17.71 16 40 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -65.97 340.07 1.73 -64.23 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.43 Total: 38.48 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.90 Total: 1.73 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -5.71 Total: -128.16 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.97 1.73 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.476 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds