Wall clock time and date at job start Mon Mar 30 2020 01:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46899 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46970 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.47050 * 54.99903 * 13 12 11 15 15 C 1.52995 * 109.46920 * 175.00247 * 13 12 11 16 16 N 1.46502 * 109.47163 * 295.00011 * 13 12 11 17 17 C 1.36936 * 120.00254 * 154.99981 * 16 13 12 18 18 H 1.08002 * 119.99681 * 0.02562 * 17 16 13 19 19 C 1.38809 * 120.00539 * 180.02562 * 17 16 13 20 20 N 1.31620 * 119.99692 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00259 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47089 * 59.99925 * 21 19 17 23 23 H 1.48505 * 109.47203 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47307 * 299.99711 * 21 19 17 25 25 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 26 26 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 27 27 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 28 28 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 29 29 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 30 30 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 31 31 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 33 33 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 34 34 H 1.08996 * 109.47139 * 300.00171 * 12 11 10 35 35 H 1.09000 * 109.46714 * 59.99797 * 12 11 10 36 36 H 1.08996 * 109.47540 * 59.99956 * 15 13 12 37 37 H 1.09007 * 109.47046 * 180.02562 * 15 13 12 38 38 H 1.09006 * 109.47221 * 299.99535 * 15 13 12 39 39 H 0.97006 * 119.99941 * 335.00045 * 16 13 12 40 40 H 0.96998 * 120.00224 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5296 -6.0667 0.2960 13 6 1.7976 -7.4102 0.3025 14 1 1.1844 -7.4942 -0.5948 15 6 2.8200 -8.5480 0.3299 16 7 0.9416 -7.4942 1.4884 17 6 -0.1597 -8.3081 1.4818 18 1 -0.3969 -8.8884 0.6024 19 6 -0.9710 -8.3873 2.6053 20 7 -0.6815 -7.6805 3.6772 21 14 -2.4728 -9.4981 2.5965 22 1 -2.0490 -10.9016 2.3603 23 1 -3.1655 -9.4044 3.9067 24 1 -3.3975 -9.0717 1.5157 25 1 -0.3633 -0.1128 -1.0215 26 1 -0.3633 0.9411 0.4130 27 1 -0.3633 -0.8281 0.6085 28 1 1.6967 2.1345 -0.0007 29 1 4.1559 2.0762 0.0001 30 1 4.1871 -2.0727 0.0010 31 1 3.1804 -3.6201 0.2231 32 1 0.8105 -4.9600 0.9755 33 1 0.9715 -5.0555 -0.7946 34 1 3.2325 -6.0395 -0.5366 35 1 3.0721 -5.9443 1.2335 36 1 3.4331 -8.4640 1.2271 37 1 2.2985 -9.5052 0.3340 38 1 3.4569 -8.4855 -0.5526 39 1 1.1549 -6.9733 2.2785 40 1 -1.2482 -7.7361 4.4625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267122516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:52 Heat of formation + Delta-G solvation = 0.696748 kcal Electronic energy + Delta-G solvation = -20835.169945 eV Core-core repulsion = 17649.874568 eV Total energy + Delta-G solvation = -3185.295377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85905 -38.98679 -36.63457 -34.72190 -33.78358 -32.43812 -31.65596 -29.32675 -28.34113 -27.65930 -24.78548 -23.80168 -22.92787 -21.94606 -20.83727 -19.76129 -17.86457 -17.16417 -16.85444 -16.46572 -15.54783 -15.41242 -14.93161 -14.86915 -14.29804 -13.80668 -13.76225 -13.48761 -13.02883 -12.89383 -12.85801 -12.63514 -12.49683 -12.15857 -11.99321 -11.54351 -11.09090 -10.91421 -10.73907 -10.63128 -10.31379 -10.15714 -9.95274 -9.76083 -9.62968 -9.48424 -9.41394 -8.91747 -8.82361 -6.94554 -5.73982 -3.02819 0.45032 0.94181 2.83728 3.18779 3.46486 3.51036 3.51704 3.64556 4.03963 4.42674 4.47277 4.61724 4.62721 4.79983 5.12914 5.22798 5.30387 5.38784 5.42521 5.56469 5.60417 5.63004 5.67563 5.87065 5.94106 6.05898 6.17136 6.18101 6.31874 6.36743 6.40371 6.48256 6.64713 6.69429 6.86425 7.06351 7.54146 7.59580 7.72419 8.25377 8.44343 9.55643 10.12147 10.46730 11.48571 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003571 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.982560 B = 7839.303680 C = 8668.947925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.019 3.981 3 C -0.185 4.185 4 C 0.119 3.881 5 N -0.494 5.494 6 C 0.137 3.863 7 C -0.188 4.188 8 C 0.556 3.444 9 O -0.525 6.525 10 N -0.722 5.722 11 C 0.122 3.878 12 C -0.134 4.134 13 C 0.175 3.825 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.395 0.605 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 16.406 -8.635 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.010 3.990 3 C -0.205 4.205 4 C -0.037 4.037 5 N -0.203 5.203 6 C -0.022 4.022 7 C -0.194 4.194 8 C 0.342 3.658 9 O -0.402 6.402 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.172 4.172 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.366 5.366 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.212 1.212 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.159 0.841 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.229 0.771 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.638 16.251 -8.737 20.816 hybrid contribution -1.076 -0.473 0.409 1.245 sum 8.562 15.778 -8.328 19.789 Atomic orbital electron populations 1.21129 0.88972 1.03800 1.04258 1.20547 0.97707 0.91326 0.89377 1.22085 0.95558 0.98710 1.04140 1.22948 0.91782 0.96405 0.92535 1.67689 1.40859 0.98308 1.13462 1.22976 0.90449 0.96589 0.92156 1.20984 0.95215 0.94663 1.08500 1.17988 0.87067 0.83416 0.77295 1.90766 1.13401 1.86928 1.49150 1.46057 1.10594 1.06578 1.74041 1.21511 0.95368 0.79669 1.03470 1.22076 0.97819 0.95593 1.01741 1.20144 0.91038 0.90320 0.92074 0.93271 1.22427 0.99371 1.01113 0.99465 1.42451 1.28226 1.53274 1.12622 1.19175 1.01174 1.18132 0.98521 0.91269 1.24720 0.99432 1.00385 0.96291 1.69643 1.40170 1.44353 1.03950 0.86293 0.83050 0.80358 0.76641 1.21367 1.21756 1.21247 0.89939 0.91830 0.87910 0.84149 0.82325 0.82424 0.77064 0.89466 0.91571 0.91837 0.91523 0.93508 0.92716 0.94561 0.78287 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.86 36.00 0.32 -1.08 16 2 C 0.02 0.21 5.95 -103.91 -0.62 -0.40 16 3 C -0.19 -1.62 9.78 -39.50 -0.39 -2.01 16 4 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 5 N -0.49 -5.36 10.35 -12.91 -0.13 -5.49 16 6 C 0.14 1.46 10.70 -17.13 -0.18 1.27 16 7 C -0.19 -2.31 5.89 -104.82 -0.62 -2.93 16 8 C 0.56 8.23 7.72 -12.33 -0.10 8.13 16 9 O -0.52 -9.57 13.50 5.32 0.07 -9.50 16 10 N -0.72 -9.55 5.51 -61.25 -0.34 -9.88 16 11 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 12 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 13 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.82 9.49 37.15 0.35 -2.47 16 16 N -0.72 -17.56 4.57 -53.43 -0.24 -17.81 16 17 C -0.24 -6.56 9.93 -15.06 -0.15 -6.70 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 27 H 0.10 1.44 5.93 -51.93 -0.31 1.13 16 28 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.16 1.26 6.47 -52.48 -0.34 0.92 16 31 H 0.39 3.92 6.58 -40.82 -0.27 3.65 16 32 H 0.09 1.76 7.75 -51.93 -0.40 1.36 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -32.87 336.10 -7.72 -40.59 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.83 Total: 9.81 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.02 Total: -2.86 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.01 Total: -60.64 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.87 -7.72 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267122516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.285 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds