Wall clock time and date at job start Mon Mar 30 2020 01:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46899 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46970 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.47050 * 54.99903 * 13 12 11 15 15 C 1.52995 * 109.46920 * 175.00247 * 13 12 11 16 16 N 1.46502 * 109.47163 * 295.00011 * 13 12 11 17 17 C 1.36936 * 120.00254 * 154.99981 * 16 13 12 18 18 H 1.08002 * 119.99681 * 0.02562 * 17 16 13 19 19 C 1.38809 * 120.00539 * 180.02562 * 17 16 13 20 20 N 1.31620 * 119.99692 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00259 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47089 * 59.99925 * 21 19 17 23 23 H 1.48505 * 109.47203 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47307 * 299.99711 * 21 19 17 25 25 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 26 26 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 27 27 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 28 28 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 29 29 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 30 30 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 31 31 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 33 33 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 34 34 H 1.08996 * 109.47139 * 300.00171 * 12 11 10 35 35 H 1.09000 * 109.46714 * 59.99797 * 12 11 10 36 36 H 1.08996 * 109.47540 * 59.99956 * 15 13 12 37 37 H 1.09007 * 109.47046 * 180.02562 * 15 13 12 38 38 H 1.09006 * 109.47221 * 299.99535 * 15 13 12 39 39 H 0.97006 * 119.99941 * 335.00045 * 16 13 12 40 40 H 0.96998 * 120.00224 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5296 -6.0667 0.2960 13 6 1.7976 -7.4102 0.3025 14 1 1.1844 -7.4942 -0.5948 15 6 2.8200 -8.5480 0.3299 16 7 0.9416 -7.4942 1.4884 17 6 -0.1597 -8.3081 1.4818 18 1 -0.3969 -8.8884 0.6024 19 6 -0.9710 -8.3873 2.6053 20 7 -0.6815 -7.6805 3.6772 21 14 -2.4728 -9.4981 2.5965 22 1 -2.0490 -10.9016 2.3603 23 1 -3.1655 -9.4044 3.9067 24 1 -3.3975 -9.0717 1.5157 25 1 -0.3633 -0.1128 -1.0215 26 1 -0.3633 0.9411 0.4130 27 1 -0.3633 -0.8281 0.6085 28 1 1.6967 2.1345 -0.0007 29 1 4.1559 2.0762 0.0001 30 1 4.1871 -2.0727 0.0010 31 1 3.1804 -3.6201 0.2231 32 1 0.8105 -4.9600 0.9755 33 1 0.9715 -5.0555 -0.7946 34 1 3.2325 -6.0395 -0.5366 35 1 3.0721 -5.9443 1.2335 36 1 3.4331 -8.4640 1.2271 37 1 2.2985 -9.5052 0.3340 38 1 3.4569 -8.4855 -0.5526 39 1 1.1549 -6.9733 2.2785 40 1 -1.2482 -7.7361 4.4625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267122516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:52 Heat of formation + Delta-G solvation = -22.404754 kcal Electronic energy + Delta-G solvation = -20836.171702 eV Core-core repulsion = 17649.874568 eV Total energy + Delta-G solvation = -3186.297134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76561 -40.04873 -38.14977 -36.06771 -34.72458 -34.20493 -32.67658 -30.94445 -29.69110 -28.67408 -25.99154 -25.47578 -24.10556 -22.91215 -22.03310 -21.21383 -19.32930 -18.76318 -17.74034 -17.22199 -16.96412 -16.65649 -16.35962 -15.81098 -15.76307 -15.32403 -15.08452 -14.75926 -14.34684 -14.09424 -13.81475 -13.69222 -13.61807 -13.42313 -13.24942 -12.96779 -12.78532 -12.62169 -12.30994 -12.24014 -12.11141 -11.62949 -11.59282 -11.09716 -10.92257 -10.63937 -10.40775 -10.27303 -10.03500 -8.97242 -7.91936 -5.18730 -0.37731 0.16562 1.46256 1.49116 1.54613 1.80007 2.07825 2.57700 2.80428 3.31886 3.42168 3.63300 3.69044 3.81563 3.92130 3.98816 4.01961 4.23352 4.37445 4.41919 4.55296 4.66069 4.69502 4.72192 4.77401 4.83823 4.89361 5.02799 5.09489 5.14360 5.20691 5.35450 5.40625 5.45669 5.54591 5.61271 5.62515 6.30941 6.47586 6.83975 7.15761 7.36957 8.15114 8.36284 9.31417 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003571 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.982560 B = 7839.303680 C = 8668.947925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.001 3.999 3 C -0.176 4.176 4 C 0.124 3.876 5 N -0.511 5.511 6 C 0.140 3.860 7 C -0.209 4.209 8 C 0.552 3.448 9 O -0.570 6.570 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.117 4.117 13 C 0.164 3.836 14 H 0.043 0.957 15 C -0.154 4.154 16 N -0.736 5.736 17 C -0.234 4.234 18 H 0.074 0.926 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.281 1.281 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.173 0.827 29 H 0.196 0.804 30 H 0.180 0.820 31 H 0.414 0.586 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.372 0.628 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.840 17.696 -9.970 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.007 4.007 3 C -0.196 4.196 4 C -0.032 4.032 5 N -0.220 5.220 6 C -0.018 4.018 7 C -0.215 4.215 8 C 0.340 3.660 9 O -0.450 6.450 10 N -0.360 5.360 11 C 0.010 3.990 12 C -0.156 4.156 13 C 0.056 3.944 14 H 0.061 0.939 15 C -0.213 4.213 16 N -0.376 5.376 17 C -0.366 4.366 18 H 0.092 0.908 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.796 3.204 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.208 1.208 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.191 0.809 29 H 0.213 0.787 30 H 0.196 0.804 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.203 0.797 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.774 17.530 -10.122 23.417 hybrid contribution -1.645 -0.771 0.739 1.961 sum 10.129 16.758 -9.383 21.714 Atomic orbital electron populations 1.21021 0.89496 1.03727 1.03446 1.20761 0.97720 0.92211 0.90041 1.22401 0.95685 0.98894 1.02573 1.23608 0.92118 0.97092 0.90342 1.67790 1.41215 0.98859 1.14128 1.23246 0.89673 0.97675 0.91242 1.20855 0.96040 0.93466 1.11100 1.18499 0.86718 0.84579 0.76232 1.90751 1.15420 1.87646 1.51215 1.45827 1.11413 1.05284 1.73478 1.21146 0.95314 0.81672 1.00823 1.21936 0.97399 0.92394 1.03841 1.20450 0.91107 0.93276 0.89577 0.93878 1.22266 0.98944 0.98799 1.01325 1.42656 1.28456 1.52582 1.13938 1.19567 1.01600 1.17283 0.98186 0.90833 1.25481 1.02552 1.02528 0.96384 1.69801 1.41353 1.46499 1.04463 0.85308 0.79879 0.79028 0.76170 1.20330 1.22419 1.20781 0.90450 0.89151 0.91382 0.80913 0.78725 0.80356 0.74842 0.94309 0.92681 0.87504 0.90940 0.93642 0.94902 0.90544 0.79652 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.86 71.24 0.63 -2.10 16 2 C 0.00 0.02 5.95 -19.40 -0.12 -0.09 16 3 C -0.18 -2.58 9.78 22.32 0.22 -2.36 16 4 C 0.12 1.75 11.17 84.69 0.95 2.70 16 5 N -0.51 -9.69 10.35 -194.75 -2.01 -11.71 16 6 C 0.14 2.72 10.70 85.04 0.91 3.63 16 7 C -0.21 -5.04 5.89 -19.99 -0.12 -5.16 16 8 C 0.55 16.77 7.72 86.79 0.67 17.44 16 9 O -0.57 -22.09 13.50 -3.87 -0.05 -22.15 16 10 N -0.71 -18.57 5.51 -465.97 -2.57 -21.14 16 11 C 0.13 4.40 5.56 86.38 0.48 4.88 16 12 C -0.12 -3.29 4.87 30.60 0.15 -3.14 16 13 C 0.16 6.05 2.89 44.99 0.13 6.19 16 14 H 0.04 1.64 8.08 -2.39 -0.02 1.63 16 15 C -0.15 -4.98 9.49 71.98 0.68 -4.30 16 16 N -0.74 -36.36 4.57 -322.95 -1.48 -37.84 16 17 C -0.23 -13.06 9.93 84.03 0.83 -12.23 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 20 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 21 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 27 H 0.07 2.05 5.93 -2.39 -0.01 2.03 16 28 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 29 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.18 2.44 6.47 -2.91 -0.02 2.42 16 31 H 0.41 7.51 6.58 -92.71 -0.61 6.90 16 32 H 0.04 1.66 7.75 -2.39 -0.02 1.64 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.37 19.89 7.80 -92.70 -0.72 19.17 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.80 336.10 1.81 -72.99 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.28 Total: 29.33 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.89 Total: 1.40 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.78 Total: -130.88 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -74.80 1.81 -72.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267122516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.588 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds