Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 120.86016 * 2 1 4 4 C 1.38306 * 119.30936 * 179.97438 * 3 2 1 5 5 N 1.31960 * 121.07786 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.87957 * 359.97438 * 5 4 3 7 7 C 1.39556 * 120.56831 * 359.74330 * 6 5 4 8 8 C 1.47840 * 120.56284 * 180.27941 * 7 6 5 9 9 O 1.21551 * 119.99936 * 186.13619 * 8 7 6 10 10 N 1.34775 * 119.99903 * 6.13698 * 8 7 6 11 11 C 1.46506 * 119.99860 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46899 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46970 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.46979 * 305.00155 * 13 12 11 15 15 C 1.52994 * 109.46975 * 185.00012 * 13 12 11 16 16 N 1.46498 * 109.47013 * 64.99737 * 13 12 11 17 17 C 1.36937 * 119.99797 * 204.99722 * 16 13 12 18 18 H 1.07998 * 120.00091 * 0.02562 * 17 16 13 19 19 C 1.38819 * 119.99461 * 180.02562 * 17 16 13 20 20 N 1.31611 * 120.00199 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99560 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47366 * 59.99958 * 21 19 17 23 23 H 1.48503 * 109.47044 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47234 * 300.00073 * 21 19 17 25 25 H 1.08999 * 109.46892 * 96.30303 * 1 2 3 26 26 H 1.09000 * 109.46881 * 336.30745 * 1 2 3 27 27 H 1.08995 * 109.47050 * 216.30801 * 1 2 3 28 28 H 1.08003 * 120.34720 * 359.95710 * 3 2 1 29 29 H 1.08004 * 119.46588 * 179.97438 * 4 3 2 30 30 H 1.08008 * 119.71398 * 180.02562 * 6 5 4 31 31 H 0.96999 * 119.99807 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.46506 * 299.99514 * 11 10 8 33 33 H 1.08999 * 109.47319 * 59.99643 * 11 10 8 34 34 H 1.08996 * 109.47139 * 300.00171 * 12 11 10 35 35 H 1.09000 * 109.46714 * 59.99797 * 12 11 10 36 36 H 1.08994 * 109.47776 * 299.99889 * 15 13 12 37 37 H 1.09008 * 109.47085 * 60.00324 * 15 13 12 38 38 H 1.09007 * 109.47292 * 179.97438 * 15 13 12 39 39 H 0.96998 * 119.99846 * 25.00394 * 16 13 12 40 40 H 0.97000 * 120.00110 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0024 0.0005 6 6 3.6196 -1.1536 0.0005 7 6 2.2249 -1.2017 0.0059 8 6 1.5175 -2.4999 0.0121 9 8 0.3073 -2.5330 -0.0958 10 7 2.2146 -3.6466 0.1374 11 6 1.5136 -4.9330 0.1430 12 6 2.5296 -6.0667 0.2960 13 6 1.7976 -7.4102 0.3025 14 1 1.0332 -7.4037 1.0796 15 6 2.7974 -8.5345 0.5799 16 7 1.1664 -7.6286 -1.0014 17 6 0.0739 -8.4478 -1.1046 18 1 -0.3227 -8.9324 -0.2247 19 6 -0.5238 -8.6551 -2.3402 20 7 -0.0402 -8.0649 -3.4125 21 14 -2.0146 -9.7720 -2.4808 22 1 -3.1134 -9.2397 -1.6356 23 1 -2.4603 -9.8267 -3.8963 24 1 -1.6548 -11.1379 -2.0226 25 1 -0.3633 -0.1128 -1.0215 26 1 -0.3633 0.9411 0.4130 27 1 -0.3633 -0.8281 0.6085 28 1 1.6967 2.1345 -0.0007 29 1 4.1559 2.0762 0.0001 30 1 4.1871 -2.0727 0.0010 31 1 3.1804 -3.6201 0.2231 32 1 0.8105 -4.9600 0.9755 33 1 0.9715 -5.0555 -0.7946 34 1 3.2325 -6.0395 -0.5366 35 1 3.0721 -5.9443 1.2335 36 1 3.5618 -8.5410 -0.1971 37 1 3.2670 -8.3719 1.5501 38 1 2.2758 -9.4916 0.5850 39 1 1.5224 -7.1931 -1.7916 40 1 -0.4581 -8.2095 -4.2759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267122517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = 0.734359 kcal Electronic energy + Delta-G solvation = -20831.105754 eV Core-core repulsion = 17645.812008 eV Total energy + Delta-G solvation = -3185.293746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85979 -38.98708 -36.63453 -34.72286 -33.78576 -32.43765 -31.65567 -29.32734 -28.34290 -27.66254 -24.78568 -23.80098 -22.92805 -21.94740 -20.83746 -19.76094 -17.86589 -17.16097 -16.85343 -16.46584 -15.62727 -15.29603 -14.96637 -14.88213 -14.29273 -13.85198 -13.70629 -13.48781 -13.04224 -12.89902 -12.87160 -12.62443 -12.49641 -12.15566 -12.00186 -11.54577 -11.09879 -10.91011 -10.73255 -10.64128 -10.30578 -10.15849 -9.95206 -9.76244 -9.63030 -9.48337 -9.41285 -8.92025 -8.82117 -6.94478 -5.73856 -3.02672 0.45006 0.94095 2.83841 3.18783 3.46557 3.51113 3.51811 3.64255 4.04258 4.42472 4.46920 4.61815 4.62821 4.79833 5.12832 5.22770 5.29991 5.38778 5.41813 5.56553 5.60160 5.63230 5.67587 5.87064 5.93432 6.05859 6.16931 6.17118 6.31771 6.36752 6.40139 6.47721 6.64604 6.69523 6.86425 7.06383 7.54135 7.59734 7.72540 8.25342 8.44427 9.55773 10.12305 10.46883 11.48687 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.003544 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.688038 B = 7898.083272 C = 8650.311854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.019 3.981 3 C -0.185 4.185 4 C 0.119 3.881 5 N -0.494 5.494 6 C 0.137 3.863 7 C -0.188 4.188 8 C 0.556 3.444 9 O -0.525 6.525 10 N -0.722 5.722 11 C 0.122 3.878 12 C -0.133 4.133 13 C 0.175 3.825 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.395 0.605 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 17.366 9.105 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.010 3.990 3 C -0.205 4.205 4 C -0.037 4.037 5 N -0.203 5.203 6 C -0.021 4.021 7 C -0.194 4.194 8 C 0.342 3.658 9 O -0.402 6.402 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.172 4.172 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.366 5.366 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.214 1.214 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.039 17.213 9.039 21.039 hybrid contribution -1.001 -0.519 -0.451 1.214 sum 7.038 16.694 8.588 20.050 Atomic orbital electron populations 1.21124 0.88991 1.03570 1.04430 1.20544 0.97691 0.91331 0.89419 1.22081 0.95561 0.98697 1.04177 1.22950 0.91781 0.96411 0.92521 1.67692 1.40858 0.98306 1.13448 1.22985 0.90458 0.96598 0.92091 1.20983 0.95219 0.94656 1.08513 1.17988 0.87091 0.83421 0.77264 1.90767 1.13461 1.86944 1.49071 1.46056 1.10598 1.06566 1.74053 1.21511 0.94958 0.79614 1.03935 1.22076 0.98096 0.95523 1.01530 1.20145 0.93044 0.90102 0.90283 0.93278 1.22427 0.99916 1.01128 0.98906 1.42448 1.33933 1.56505 1.03685 1.19176 1.04281 1.20109 0.93461 0.91266 1.24721 0.99660 1.00789 0.95647 1.69639 1.42724 1.47238 0.98494 0.86297 0.82980 0.80493 0.76587 1.21247 1.21755 1.21365 0.89783 0.91888 0.88071 0.84158 0.82325 0.82401 0.77063 0.91578 0.89459 0.91511 0.91851 0.93505 0.94566 0.92716 0.78284 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.86 36.00 0.32 -1.06 16 2 C 0.02 0.21 5.95 -103.91 -0.62 -0.41 16 3 C -0.19 -1.62 9.78 -39.50 -0.39 -2.00 16 4 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 5 N -0.49 -5.38 10.35 -12.91 -0.13 -5.51 16 6 C 0.14 1.47 10.70 -17.13 -0.18 1.29 16 7 C -0.19 -2.31 5.89 -104.82 -0.62 -2.93 16 8 C 0.56 8.23 7.72 -12.33 -0.10 8.13 16 9 O -0.52 -9.57 13.50 5.32 0.07 -9.50 16 10 N -0.72 -9.54 5.51 -61.25 -0.34 -9.88 16 11 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 12 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 13 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.82 9.49 37.15 0.35 -2.47 16 16 N -0.72 -17.57 4.57 -53.43 -0.24 -17.82 16 17 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.10 1.34 5.93 -51.93 -0.31 1.04 16 28 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.16 1.29 6.47 -52.48 -0.34 0.95 16 31 H 0.39 3.92 6.58 -40.82 -0.27 3.65 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.77 7.75 -51.93 -0.40 1.36 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -32.92 336.10 -7.72 -40.64 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.83 Total: 9.77 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.02 Total: -2.82 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.01 Total: -60.69 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.92 -7.72 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267122517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.375 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds