Wall clock time and date at job start Mon Mar 30 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38627 * 120.31775 * 2 1 4 4 C 1.38592 * 118.48529 * 179.72400 * 3 2 1 5 5 C 1.39305 * 119.05922 * 0.49986 * 4 3 2 6 6 C 1.48168 * 119.72533 * 179.76874 * 5 4 3 7 7 O 1.21516 * 119.99754 * 359.72496 * 6 5 4 8 8 N 1.34781 * 120.00159 * 179.72429 * 6 5 4 9 9 C 1.46503 * 119.99847 * 179.72360 * 8 6 5 10 10 C 1.52994 * 109.47033 * 180.27288 * 9 8 6 11 11 N 1.46501 * 109.47412 * 179.97438 * 10 9 8 12 12 C 1.46499 * 119.99623 * 90.00074 * 11 10 9 13 13 C 1.36937 * 120.00041 * 270.00318 * 11 10 9 14 14 H 1.07993 * 119.99834 * 23.04367 * 13 11 10 15 15 C 1.38808 * 119.99826 * 203.04225 * 13 11 10 16 16 N 1.31621 * 120.00366 * 12.93004 * 15 13 11 17 17 Si 1.86796 * 119.99983 * 192.93213 * 15 13 11 18 18 H 1.48495 * 109.47752 * 89.99994 * 17 15 13 19 19 H 1.48504 * 109.47202 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47095 * 329.99449 * 17 15 13 21 21 N 1.32724 * 120.55426 * 359.48903 * 5 4 3 22 22 C 1.31523 * 121.64015 * 0.25785 * 21 5 4 23 23 C 1.50700 * 119.54445 * 179.97438 * 22 21 5 24 24 H 1.09007 * 109.46694 * 270.01431 * 1 2 3 25 25 H 1.08989 * 109.47603 * 30.02001 * 1 2 3 26 26 H 1.08999 * 109.46836 * 150.02478 * 1 2 3 27 27 H 1.07999 * 120.76245 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.47267 * 180.26093 * 4 3 2 29 29 H 0.96995 * 119.99743 * 359.97438 * 8 6 5 30 30 H 1.08994 * 109.47345 * 300.27980 * 9 8 6 31 31 H 1.09001 * 109.46939 * 60.27661 * 9 8 6 32 32 H 1.09003 * 109.47487 * 300.00310 * 10 9 8 33 33 H 1.09007 * 109.47311 * 60.00164 * 10 9 8 34 34 H 1.08998 * 109.47416 * 95.12836 * 12 11 10 35 35 H 1.09002 * 109.46944 * 215.12242 * 12 11 10 36 36 H 1.09003 * 109.47531 * 335.12457 * 12 11 10 37 37 H 0.97000 * 120.00186 * 180.02562 * 16 15 13 38 38 H 1.09005 * 109.46632 * 90.00814 * 23 22 21 39 39 H 1.08997 * 109.46801 * 209.99692 * 23 22 21 40 40 H 1.08997 * 109.47154 * 330.00175 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1967 0.0000 4 6 3.5920 1.1524 0.0059 5 6 4.2294 -0.0863 0.0009 6 6 5.7097 -0.1509 0.0019 7 8 6.3625 0.8741 0.0019 8 7 6.3321 -1.3463 0.0027 9 6 7.7957 -1.4101 -0.0025 10 6 8.2424 -2.8734 -0.0072 11 7 9.7060 -2.9372 -0.0129 12 6 10.4426 -2.9717 1.2529 13 6 10.3855 -2.9646 -1.2015 14 1 9.9231 -2.5762 -2.0969 15 6 11.6686 -3.4914 -1.2555 16 7 12.1365 -4.1897 -0.2426 17 14 12.7312 -3.2095 -2.7656 18 1 13.5184 -1.9625 -2.5913 19 1 13.6560 -4.3581 -2.9416 20 1 11.8642 -3.0840 -3.9646 21 7 3.5218 -1.2092 0.0009 22 6 2.2066 -1.1959 0.0005 23 6 1.4504 -2.4995 -0.0001 24 1 -0.3633 0.0003 1.0278 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6846 2.1420 -0.0004 28 1 4.1692 2.0652 0.0103 29 1 5.8110 -2.1644 0.0031 30 1 8.1781 -0.9106 -0.8925 31 1 8.1841 -0.9145 0.8873 32 1 7.8601 -3.3729 0.8830 33 1 7.8540 -3.3690 -0.8969 34 1 10.6600 -4.0062 1.5188 35 1 11.3768 -2.4205 1.1449 36 1 9.8393 -2.5142 2.0371 37 1 13.0333 -4.5575 -0.2802 38 1 1.2676 -2.8139 1.0275 39 1 0.4984 -2.3669 -0.5141 40 1 2.0380 -3.2602 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267206664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:28 Heat of formation + Delta-G solvation = 15.087993 kcal Electronic energy + Delta-G solvation = -20641.408879 eV Core-core repulsion = 17456.737553 eV Total energy + Delta-G solvation = -3184.671326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85000 -38.96986 -36.04716 -34.35107 -34.02568 -33.22474 -31.29064 -28.93664 -28.34050 -27.18883 -25.81777 -23.84271 -22.99312 -22.01733 -20.63061 -20.29981 -17.94958 -16.84701 -16.64478 -15.51562 -15.46344 -15.40730 -14.77262 -14.69309 -14.52820 -13.73034 -13.57364 -13.49854 -13.25756 -13.15405 -13.02518 -12.63655 -12.36966 -12.33511 -12.22838 -11.76649 -11.14502 -10.86425 -10.84201 -10.56844 -10.33410 -10.20993 -10.01498 -9.91822 -9.88134 -9.58667 -9.06842 -8.63906 -8.53329 -6.76885 -5.71286 -3.19444 0.48455 0.98092 2.76364 3.29691 3.41419 3.47507 3.48975 3.74559 3.93443 4.35002 4.50123 4.53097 4.54038 4.77256 5.00091 5.10090 5.25251 5.30883 5.31966 5.36936 5.42391 5.54645 5.67308 5.76365 5.79391 5.86424 5.93201 5.97710 6.29814 6.38699 6.62679 6.68855 6.79551 6.92271 7.39436 7.51464 7.74153 7.83031 7.85694 8.38272 8.43132 9.24204 9.86500 10.34849 11.33560 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.003067 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.702956 B = 9128.063484 C = 9332.854978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.116 4.116 5 C 0.085 3.915 6 C 0.563 3.437 7 O -0.538 6.538 8 N -0.701 5.701 9 C 0.092 3.908 10 C 0.144 3.856 11 N -0.597 5.597 12 C 0.161 3.839 13 C -0.259 4.259 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.907 5.907 17 Si 0.907 3.093 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 N -0.455 5.455 22 C 0.124 3.876 23 C -0.107 4.107 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.407 0.593 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.042 0.958 36 H -0.001 1.001 37 H 0.253 0.747 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.062 6.546 2.067 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.137 4.137 5 C -0.054 4.054 6 C 0.347 3.653 7 O -0.415 6.415 8 N -0.351 5.351 9 C -0.033 4.033 10 C 0.015 3.985 11 N -0.320 5.320 12 C 0.016 3.984 13 C -0.388 4.388 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.552 5.552 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 N -0.167 5.167 22 C -0.016 4.016 23 C -0.164 4.164 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.158 0.842 28 H 0.166 0.834 29 H 0.242 0.758 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.860 6.356 2.097 24.781 hybrid contribution 0.063 0.675 -0.755 1.015 sum -23.797 7.031 1.342 24.850 Atomic orbital electron populations 1.20856 0.89973 1.03451 1.02871 1.20928 0.97704 0.93614 1.00160 1.21492 0.93622 0.98347 0.97303 1.22121 0.94843 0.99179 0.97557 1.21271 0.94486 0.89491 1.00125 1.17883 0.85512 0.84372 0.77564 1.90782 1.65827 1.34237 1.50687 1.45951 1.08880 1.08039 1.72208 1.22508 0.76453 1.02167 1.02200 1.20836 0.86414 0.91443 0.99786 1.43791 0.98805 1.85771 1.03634 1.20843 0.93912 0.99446 0.84190 1.19213 0.97812 1.34016 0.87768 0.91290 1.25032 0.99046 0.97766 0.97696 1.70076 1.17221 1.36603 1.31263 0.86222 0.80398 0.77280 0.82447 1.21423 1.21732 1.20429 1.67402 1.08027 1.30509 1.10759 1.21160 0.89195 0.95288 0.95965 1.20808 0.99276 0.92997 1.03361 0.90539 0.91170 0.90528 0.84187 0.83408 0.75755 0.91322 0.92001 0.93965 0.92828 0.94847 0.93935 0.98240 0.93711 0.90160 0.90303 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.62 36.01 0.35 -0.22 16 2 C -0.12 -1.04 5.91 -104.36 -0.62 -1.65 16 3 C -0.08 -0.73 9.85 -39.31 -0.39 -1.12 16 4 C -0.12 -1.38 9.63 -39.05 -0.38 -1.76 16 5 C 0.08 1.21 6.75 -83.01 -0.56 0.65 16 6 C 0.56 9.66 7.81 -12.18 -0.10 9.56 16 7 O -0.54 -10.83 16.32 5.35 0.09 -10.74 16 8 N -0.70 -11.65 5.55 -61.15 -0.34 -11.99 16 9 C 0.09 1.79 6.00 -4.04 -0.02 1.77 16 10 C 0.14 2.98 5.76 -4.04 -0.02 2.95 16 11 N -0.60 -15.35 2.92 -181.12 -0.53 -15.87 16 12 C 0.16 4.05 8.98 59.85 0.54 4.58 16 13 C -0.26 -7.25 9.65 -15.06 -0.15 -7.39 16 14 H 0.07 1.90 7.86 -52.49 -0.41 1.48 16 15 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 16 N -0.91 -26.80 10.71 55.49 0.59 -26.21 16 17 Si 0.91 22.27 29.57 -169.99 -5.03 17.25 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 N -0.46 -5.91 9.45 -6.06 -0.06 -5.96 16 22 C 0.12 1.27 6.78 -82.61 -0.56 0.71 16 23 C -0.11 -0.75 9.77 36.01 0.35 -0.39 16 24 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 25 H 0.07 0.28 8.09 -51.94 -0.42 -0.14 16 26 H 0.08 0.30 5.95 -51.93 -0.31 -0.01 16 27 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.15 1.70 7.64 -52.48 -0.40 1.30 16 29 H 0.41 5.99 7.80 -40.82 -0.32 5.67 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.05 1.09 8.04 -51.92 -0.42 0.68 16 34 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 35 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 36 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.37 5.93 -51.93 -0.31 0.06 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -33.22 336.63 -7.70 -40.92 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.86 Total: -0.14 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.64 Total: 7.68 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.33 Total: -60.04 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.22 -7.70 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267206664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.007 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds