Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38627 * 120.31775 * 2 1 4 4 C 1.38592 * 118.48529 * 179.72400 * 3 2 1 5 5 C 1.39305 * 119.05922 * 0.49986 * 4 3 2 6 6 C 1.48168 * 119.72533 * 179.76874 * 5 4 3 7 7 O 1.21516 * 119.99754 * 359.72496 * 6 5 4 8 8 N 1.34781 * 120.00159 * 179.72429 * 6 5 4 9 9 C 1.46503 * 119.99847 * 179.72360 * 8 6 5 10 10 C 1.52994 * 109.47033 * 180.27288 * 9 8 6 11 11 N 1.46501 * 109.47412 * 179.97438 * 10 9 8 12 12 C 1.46499 * 119.99623 * 90.00074 * 11 10 9 13 13 C 1.36937 * 120.00041 * 270.00318 * 11 10 9 14 14 H 1.07993 * 119.99834 * 23.04367 * 13 11 10 15 15 C 1.38808 * 119.99826 * 203.04225 * 13 11 10 16 16 N 1.31621 * 120.00366 * 12.93004 * 15 13 11 17 17 Si 1.86796 * 119.99983 * 192.93213 * 15 13 11 18 18 H 1.48495 * 109.47752 * 89.99994 * 17 15 13 19 19 H 1.48504 * 109.47202 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47095 * 329.99449 * 17 15 13 21 21 N 1.32724 * 120.55426 * 359.48903 * 5 4 3 22 22 C 1.31523 * 121.64015 * 0.25785 * 21 5 4 23 23 C 1.50700 * 119.54445 * 179.97438 * 22 21 5 24 24 H 1.09007 * 109.46694 * 270.01431 * 1 2 3 25 25 H 1.08989 * 109.47603 * 30.02001 * 1 2 3 26 26 H 1.08999 * 109.46836 * 150.02478 * 1 2 3 27 27 H 1.07999 * 120.76245 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.47267 * 180.26093 * 4 3 2 29 29 H 0.96995 * 119.99743 * 359.97438 * 8 6 5 30 30 H 1.08994 * 109.47345 * 300.27980 * 9 8 6 31 31 H 1.09001 * 109.46939 * 60.27661 * 9 8 6 32 32 H 1.09003 * 109.47487 * 300.00310 * 10 9 8 33 33 H 1.09007 * 109.47311 * 60.00164 * 10 9 8 34 34 H 1.08998 * 109.47416 * 95.12836 * 12 11 10 35 35 H 1.09002 * 109.46944 * 215.12242 * 12 11 10 36 36 H 1.09003 * 109.47531 * 335.12457 * 12 11 10 37 37 H 0.97000 * 120.00186 * 180.02562 * 16 15 13 38 38 H 1.09005 * 109.46632 * 90.00814 * 23 22 21 39 39 H 1.08997 * 109.46801 * 209.99692 * 23 22 21 40 40 H 1.08997 * 109.47154 * 330.00175 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1967 0.0000 4 6 3.5920 1.1524 0.0059 5 6 4.2294 -0.0863 0.0009 6 6 5.7097 -0.1509 0.0019 7 8 6.3625 0.8741 0.0019 8 7 6.3321 -1.3463 0.0027 9 6 7.7957 -1.4101 -0.0025 10 6 8.2424 -2.8734 -0.0072 11 7 9.7060 -2.9372 -0.0129 12 6 10.4426 -2.9717 1.2529 13 6 10.3855 -2.9646 -1.2015 14 1 9.9231 -2.5762 -2.0969 15 6 11.6686 -3.4914 -1.2555 16 7 12.1365 -4.1897 -0.2426 17 14 12.7312 -3.2095 -2.7656 18 1 13.5184 -1.9625 -2.5913 19 1 13.6560 -4.3581 -2.9416 20 1 11.8642 -3.0840 -3.9646 21 7 3.5218 -1.2092 0.0009 22 6 2.2066 -1.1959 0.0005 23 6 1.4504 -2.4995 -0.0001 24 1 -0.3633 0.0003 1.0278 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6846 2.1420 -0.0004 28 1 4.1692 2.0652 0.0103 29 1 5.8110 -2.1644 0.0031 30 1 8.1781 -0.9106 -0.8925 31 1 8.1841 -0.9145 0.8873 32 1 7.8601 -3.3729 0.8830 33 1 7.8540 -3.3690 -0.8969 34 1 10.6600 -4.0062 1.5188 35 1 11.3768 -2.4205 1.1449 36 1 9.8393 -2.5142 2.0371 37 1 13.0333 -4.5575 -0.2802 38 1 1.2676 -2.8139 1.0275 39 1 0.4984 -2.3669 -0.5141 40 1 2.0380 -3.2602 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267206664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = -7.328191 kcal Electronic energy + Delta-G solvation = -20642.380917 eV Core-core repulsion = 17456.737553 eV Total energy + Delta-G solvation = -3185.643365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77705 -40.23179 -37.89816 -35.84992 -34.92006 -34.01731 -33.27381 -30.23061 -29.18849 -28.23640 -27.89322 -25.32169 -23.97449 -23.02683 -22.38967 -21.55004 -19.20558 -18.66180 -17.78169 -17.07325 -16.71412 -16.47167 -16.21378 -15.82551 -15.58915 -15.37256 -15.09584 -14.65497 -14.34636 -14.21258 -14.08990 -13.65153 -13.58281 -13.19407 -13.06006 -12.95026 -12.81797 -12.71791 -12.50126 -12.31482 -12.20443 -11.99183 -11.82723 -11.45484 -10.77902 -10.69795 -10.55256 -10.22238 -9.76576 -8.86517 -7.86496 -5.37499 -0.41253 0.20957 1.45171 1.47464 1.55772 1.63442 2.00482 2.50417 2.77444 3.01479 3.27159 3.64487 3.76045 3.83486 3.87731 3.96805 4.17135 4.21839 4.26675 4.57988 4.61064 4.69823 4.75095 4.77893 4.79464 4.92430 4.99323 5.02956 5.10068 5.17264 5.24265 5.26063 5.29569 5.40667 5.60189 5.67425 5.70686 6.28892 6.37392 6.79737 7.08847 7.11359 7.80225 8.23768 9.16799 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.003067 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.702956 B = 9128.063484 C = 9332.854978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C -0.079 4.079 4 C -0.124 4.124 5 C 0.052 3.948 6 C 0.561 3.439 7 O -0.577 6.577 8 N -0.694 5.694 9 C 0.114 3.886 10 C 0.148 3.852 11 N -0.615 5.615 12 C 0.173 3.827 13 C -0.270 4.270 14 H 0.069 0.931 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.268 1.268 21 N -0.474 5.474 22 C 0.109 3.891 23 C -0.106 4.106 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.175 0.825 28 H 0.143 0.857 29 H 0.417 0.583 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.031 0.969 37 H 0.250 0.750 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.420 6.867 1.664 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 C -0.105 4.105 4 C -0.145 4.145 5 C -0.085 4.085 6 C 0.347 3.653 7 O -0.457 6.457 8 N -0.345 5.345 9 C -0.013 4.013 10 C 0.021 3.979 11 N -0.339 5.339 12 C 0.028 3.972 13 C -0.400 4.400 14 H 0.087 0.913 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.193 1.193 21 N -0.187 5.187 22 C -0.032 4.032 23 C -0.162 4.162 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.193 0.807 28 H 0.161 0.839 29 H 0.255 0.745 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.267 6.671 1.691 28.122 hybrid contribution 0.898 0.592 -0.598 1.230 sum -26.369 7.262 1.094 27.373 Atomic orbital electron populations 1.20993 0.86790 1.05041 1.04235 1.21418 0.99842 0.92643 0.97038 1.21891 0.92277 1.00246 0.96044 1.22217 0.96421 0.98086 0.97761 1.20825 0.92606 0.91010 1.04028 1.18406 0.87120 0.83562 0.76191 1.90743 1.67171 1.35350 1.52452 1.45761 1.07611 1.08769 1.72339 1.21983 0.78206 1.00657 1.00453 1.20909 0.83856 0.92157 1.00952 1.44021 1.00797 1.85964 1.03093 1.20613 0.93484 0.97984 0.85076 1.19508 0.98386 1.33443 0.88621 0.91287 1.25807 1.00259 0.97917 1.00580 1.70225 1.17290 1.37642 1.33044 0.85221 0.78605 0.76801 0.79539 1.21443 1.21700 1.19306 1.67317 1.09634 1.30149 1.11555 1.21815 0.88452 0.97477 0.95446 1.20923 0.99856 0.91106 1.04355 0.88994 0.89558 0.89056 0.80726 0.83947 0.74525 0.93761 0.93181 0.91818 0.92439 0.96911 0.96591 0.95097 0.94073 0.89040 0.87539 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.62 71.24 0.69 0.11 16 2 C -0.11 -1.47 5.91 -19.69 -0.12 -1.59 16 3 C -0.08 -1.21 9.85 22.45 0.22 -0.99 16 4 C -0.12 -2.88 9.63 22.61 0.22 -2.66 16 5 C 0.05 1.49 6.75 41.91 0.28 1.77 16 6 C 0.56 19.84 7.81 86.88 0.68 20.52 16 7 O -0.58 -24.21 16.32 -3.76 -0.06 -24.27 16 8 N -0.69 -23.47 5.55 -465.66 -2.58 -26.05 16 9 C 0.11 4.49 6.00 86.38 0.52 5.01 16 10 C 0.15 6.13 5.76 86.38 0.50 6.62 16 11 N -0.62 -31.94 2.92 -726.94 -2.12 -34.06 16 12 C 0.17 8.86 8.98 127.77 1.15 10.01 16 13 C -0.27 -15.27 9.65 84.03 0.81 -14.46 16 14 H 0.07 3.83 7.86 -2.91 -0.02 3.80 16 15 C -0.05 -2.88 5.10 84.86 0.43 -2.45 16 16 N -0.94 -56.32 10.71 21.65 0.23 -56.08 16 17 Si 0.97 46.26 29.57 68.60 2.03 48.28 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 N -0.47 -11.97 9.45 -173.09 -1.64 -13.60 16 22 C 0.11 1.98 6.78 42.68 0.29 2.27 16 23 C -0.11 -1.16 9.77 71.24 0.70 -0.47 16 24 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 25 H 0.09 0.23 8.09 -2.39 -0.02 0.22 16 26 H 0.09 0.24 5.95 -2.39 -0.01 0.23 16 27 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.14 3.35 7.64 -2.91 -0.02 3.33 16 29 H 0.42 12.29 7.80 -92.71 -0.72 11.56 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.06 2.33 8.04 -2.38 -0.02 2.31 16 34 H 0.01 0.69 7.34 -2.39 -0.02 0.68 16 35 H 0.02 0.86 7.34 -2.39 -0.02 0.84 16 36 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.11 0.56 5.93 -2.39 -0.01 0.54 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.76 336.63 2.54 -71.22 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.32 Total: 10.87 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.36 Total: 23.70 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -6.11 Total: -129.80 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -73.76 2.54 -71.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267206664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.892 kcal (2) G-P(sol) polarization free energy of solvation -73.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds