Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39831 * 126.45614 * 2 1 4 4 C 1.35451 * 107.86181 * 179.83541 * 3 2 1 5 5 N 1.35531 * 108.87507 * 0.43335 * 4 3 2 6 6 H 0.96995 * 125.68259 * 179.70593 * 5 4 3 7 7 C 1.37656 * 108.64089 * 359.72937 * 5 4 3 8 8 C 1.46673 * 126.23091 * 180.02562 * 7 5 4 9 9 O 1.21694 * 119.99968 * 186.10171 * 8 7 5 10 10 N 1.34772 * 120.00461 * 6.10297 * 8 7 5 11 11 C 1.47423 * 125.64813 * 6.26710 * 10 8 7 12 12 C 1.55128 * 104.72549 * 155.81573 * 11 10 8 13 13 C 1.55154 * 101.48327 * 37.29967 * 12 11 10 14 14 C 1.47027 * 125.65152 * 186.57511 * 10 8 7 15 15 H 1.08995 * 109.87965 * 300.44044 * 14 10 8 16 16 C 1.52992 * 109.88076 * 61.60753 * 14 10 8 17 17 N 1.46508 * 109.47033 * 283.72939 * 16 14 10 18 18 C 1.36936 * 119.99617 * 172.21311 * 17 16 14 19 19 H 1.07994 * 120.00688 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99621 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99810 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00204 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46852 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47009 * 120.00192 * 22 20 18 25 25 H 1.48496 * 109.46910 * 240.00207 * 22 20 18 26 26 H 1.08996 * 109.46982 * 269.68702 * 1 2 3 27 27 H 1.08999 * 109.46789 * 149.68851 * 1 2 3 28 28 H 1.08996 * 109.46836 * 29.68893 * 1 2 3 29 29 H 1.08002 * 126.06852 * 0.02562 * 3 2 1 30 30 H 1.08003 * 125.56697 * 180.13081 * 4 3 2 31 31 H 1.09004 * 110.36759 * 274.75066 * 11 10 8 32 32 H 1.09008 * 110.36800 * 37.06967 * 11 10 8 33 33 H 1.09000 * 111.19565 * 279.19362 * 12 11 10 34 34 H 1.09003 * 110.93642 * 155.28907 * 12 11 10 35 35 H 1.08998 * 110.71950 * 205.96985 * 13 12 11 36 36 H 1.08997 * 110.87682 * 82.76701 * 13 12 11 37 37 H 1.09003 * 109.47763 * 43.72948 * 16 14 10 38 38 H 1.09003 * 109.47319 * 163.73095 * 16 14 10 39 39 H 0.96995 * 119.99962 * 352.22466 * 17 16 14 40 40 H 0.97001 * 119.99662 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 0.0037 5 7 3.6285 -0.6625 -0.0037 6 1 4.4191 -1.2244 -0.0070 7 6 2.3263 -1.1089 -0.0061 8 6 1.8899 -2.5092 -0.0132 9 8 0.7084 -2.7778 -0.1267 10 7 2.7974 -3.4985 0.1061 11 6 4.2346 -3.3177 0.3796 12 6 4.6848 -4.6553 1.0235 13 6 3.8484 -5.6833 0.2167 14 6 2.5191 -4.9365 -0.0214 15 1 1.7848 -5.2395 0.7249 16 6 1.9948 -5.2425 -1.4257 17 7 0.5965 -4.8174 -1.5283 18 6 -0.0398 -4.8433 -2.7406 19 1 0.4889 -5.1775 -3.6210 20 6 -1.3645 -4.4400 -2.8379 21 7 -2.0088 -4.0323 -1.7650 22 14 -2.2328 -4.4760 -4.4915 23 1 -1.2959 -4.9714 -5.5318 24 1 -3.4083 -5.3799 -4.4137 25 1 -2.6844 -3.1058 -4.8433 26 1 -0.3633 -0.0056 1.0276 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8927 -0.5090 29 1 2.0137 2.1549 0.0004 30 1 4.4973 1.3251 0.0067 31 1 4.7779 -3.1388 -0.5483 32 1 4.3876 -2.4921 1.0749 33 1 4.4291 -4.6886 2.0825 34 1 5.7524 -4.8186 0.8761 35 1 3.6828 -6.5887 0.8006 36 1 4.3328 -5.9202 -0.7305 37 1 2.5927 -4.7054 -2.1620 38 1 2.0635 -6.3140 -1.6138 39 1 0.1215 -4.5175 -0.7376 40 1 -2.9346 -3.7508 -1.8330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267953881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = 18.474068 kcal Electronic energy + Delta-G solvation = -22514.100099 eV Core-core repulsion = 19329.575604 eV Total energy + Delta-G solvation = -3184.524495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34298 -40.58343 -38.29217 -36.24123 -33.79750 -33.25054 -32.51690 -30.70686 -29.98079 -27.94194 -26.67947 -24.84657 -23.87446 -22.45316 -21.92384 -20.93334 -19.82487 -19.25280 -18.37376 -17.59890 -16.91800 -16.63143 -16.04975 -15.57788 -15.20787 -14.92104 -14.76788 -14.66269 -14.43354 -13.97425 -13.89586 -13.72910 -13.57578 -13.31351 -13.12201 -13.08249 -12.93586 -12.71219 -12.49505 -12.22985 -12.10985 -11.94017 -11.65364 -11.53667 -10.92207 -10.63036 -9.68657 -9.58190 -9.01953 -8.81812 -7.80634 -5.09435 0.60957 1.40483 1.43980 1.52891 1.88292 1.98811 2.34753 2.53718 2.58058 3.46162 3.54599 3.59380 3.89992 3.99320 4.15771 4.26685 4.29035 4.32690 4.36797 4.46742 4.49239 4.76029 4.78608 4.82898 4.84913 4.88251 4.96917 5.06046 5.10805 5.11413 5.20530 5.35822 5.47466 5.51318 5.57106 5.85971 6.03421 6.36000 6.61619 6.69018 7.34850 7.50804 8.31559 8.57087 9.40684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.007347 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.691725 B = 3810.054829 C = 5336.310109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.105 4.105 3 C -0.230 4.230 4 C 0.044 3.956 5 N -0.531 5.531 6 H 0.428 0.572 7 C -0.075 4.075 8 C 0.571 3.429 9 O -0.518 6.518 10 N -0.622 5.622 11 C 0.079 3.921 12 C -0.113 4.113 13 C -0.114 4.114 14 C 0.132 3.868 15 H 0.046 0.954 16 C 0.143 3.857 17 N -0.737 5.737 18 C -0.248 4.248 19 H 0.064 0.936 20 C -0.074 4.074 21 N -0.950 5.950 22 Si 0.967 3.033 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.297 1.297 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.222 0.778 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.010 0.990 38 H 0.026 0.974 39 H 0.387 0.613 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.699 6.447 7.882 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.253 4.253 4 C -0.092 4.092 5 N -0.133 5.133 6 H 0.273 0.727 7 C -0.188 4.188 8 C 0.360 3.640 9 O -0.392 6.392 10 N -0.358 5.358 11 C -0.043 4.043 12 C -0.151 4.151 13 C -0.152 4.152 14 C 0.028 3.972 15 H 0.065 0.935 16 C 0.015 3.985 17 N -0.385 5.385 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.267 4.267 21 N -0.600 5.600 22 Si 0.797 3.203 23 H -0.192 1.192 24 H -0.217 1.217 25 H -0.224 1.224 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.177 0.823 30 H 0.239 0.761 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.028 0.972 38 H 0.044 0.956 39 H 0.225 0.775 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.109 6.174 7.656 23.288 hybrid contribution -1.194 -0.176 -0.804 1.450 sum 19.915 5.997 6.852 21.899 Atomic orbital electron populations 1.20216 0.90975 1.01846 1.01402 1.20194 0.95555 0.92662 1.02965 1.21057 0.92374 0.98611 1.13281 1.22731 1.00149 0.82755 1.03581 1.42494 1.06269 1.08002 1.56487 0.72724 1.20066 0.85500 0.92452 1.20759 1.17347 0.85390 0.83797 0.77428 1.90950 1.17442 1.82398 1.48409 1.48471 1.09457 1.05639 1.72253 1.22844 0.79932 1.00890 1.00669 1.22800 1.01763 0.91012 0.99491 1.22638 0.91784 0.98575 1.02245 1.21839 0.98976 0.80816 0.95576 0.93550 1.21215 0.85885 0.96411 0.94964 1.42978 1.08753 1.78353 1.08395 1.19567 0.94359 1.35653 0.88459 0.91829 1.25557 0.98042 1.02852 1.00265 1.69973 1.09989 1.51255 1.28786 0.85168 0.78484 0.76624 0.80063 1.19220 1.21699 1.22442 0.91958 0.93956 0.90858 0.82271 0.76144 0.89974 0.89524 0.90032 0.85884 0.88386 0.89201 0.97208 0.95609 0.77492 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.49 9.90 71.24 0.71 -2.78 16 2 C -0.10 -3.77 6.21 -19.56 -0.12 -3.90 16 3 C -0.23 -5.89 10.76 22.01 0.24 -5.65 16 4 C 0.04 0.82 11.89 83.48 0.99 1.82 16 5 N -0.53 -12.10 5.37 -183.62 -0.99 -13.08 16 6 H 0.43 6.78 5.35 -92.71 -0.50 6.29 16 7 C -0.08 -2.67 6.82 40.35 0.28 -2.39 16 8 C 0.57 24.53 7.53 86.45 0.65 25.18 16 9 O -0.52 -28.69 11.44 -4.33 -0.05 -28.74 16 10 N -0.62 -20.94 3.06 -792.28 -2.43 -23.37 16 11 C 0.08 1.51 5.24 86.93 0.46 1.96 16 12 C -0.11 -1.59 7.10 32.06 0.23 -1.36 16 13 C -0.11 -2.37 6.44 31.78 0.20 -2.16 16 14 C 0.13 4.61 3.02 45.34 0.14 4.75 16 15 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 16 C 0.14 6.41 5.61 86.38 0.48 6.90 16 17 N -0.74 -43.17 4.40 -343.44 -1.51 -44.68 16 18 C -0.25 -15.67 9.99 84.04 0.84 -14.83 16 19 H 0.06 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -4.77 5.50 84.86 0.47 -4.30 16 21 N -0.95 -65.17 13.06 21.65 0.28 -64.88 16 22 Si 0.97 51.02 29.55 68.60 2.03 53.04 16 23 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.04 2.16 6.38 -2.39 -0.02 2.14 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.08 1.31 7.83 -2.39 -0.02 1.29 16 32 H 0.09 1.35 6.25 -2.38 -0.01 1.33 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.70 7.85 -2.39 -0.02 1.68 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 39 H 0.39 24.77 5.12 -92.71 -0.47 24.30 16 40 H 0.24 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -90.25 320.26 2.98 -87.27 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.09 Total: 31.22 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 5.56 Total: 3.22 kcal Atomic # 7 Polarization: -141.37 SS G_CDS: -4.64 Total: -146.01 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.05 Total: -28.74 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.03 Total: 53.04 kcal Total: -90.25 2.98 -87.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267953881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.739 kcal (2) G-P(sol) polarization free energy of solvation -90.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds