Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38166 * 120.50029 * 2 1 4 4 N 1.31794 * 120.89569 * 180.02562 * 3 2 1 5 5 C 1.31828 * 122.05109 * 0.02562 * 4 3 2 6 6 C 1.38131 * 120.89533 * 0.02562 * 5 4 3 7 7 C 1.39803 * 120.49677 * 180.02562 * 2 1 3 8 8 C 1.48149 * 120.92382 * 359.95878 * 7 2 1 9 9 O 1.21513 * 120.00004 * 353.94224 * 8 7 2 10 10 N 1.34778 * 119.99887 * 173.94932 * 8 7 2 11 11 C 1.46493 * 119.99936 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47292 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47400 * 305.00593 * 12 11 10 14 14 C 1.53006 * 109.46681 * 65.00069 * 12 11 10 15 15 C 1.52999 * 109.47310 * 185.00193 * 12 11 10 16 16 N 1.46496 * 109.47021 * 175.00372 * 15 12 11 17 17 C 1.36936 * 120.00047 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00205 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99993 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47135 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47060 * 119.99591 * 21 19 17 24 24 H 1.48493 * 109.47253 * 240.00259 * 21 19 17 25 25 H 1.09003 * 109.46888 * 263.64246 * 1 2 3 26 26 H 1.08990 * 109.47058 * 23.64348 * 1 2 3 27 27 H 1.08998 * 109.46803 * 143.64822 * 1 2 3 28 28 H 1.07997 * 119.55131 * 0.03123 * 3 2 1 29 29 H 1.07999 * 119.55288 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.50085 * 179.97438 * 6 5 4 31 31 H 0.96999 * 119.99871 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47210 * 299.99864 * 11 10 8 33 33 H 1.09005 * 109.47130 * 60.00008 * 11 10 8 34 34 H 1.08996 * 109.46980 * 60.00614 * 14 12 11 35 35 H 1.09001 * 109.46429 * 179.97438 * 14 12 11 36 36 H 1.08999 * 109.47145 * 300.00130 * 14 12 11 37 37 H 1.09002 * 109.46774 * 295.00171 * 15 12 11 38 38 H 1.08996 * 109.47489 * 55.00008 * 15 12 11 39 39 H 0.97000 * 120.00178 * 359.97438 * 16 15 12 40 40 H 0.97003 * 120.00197 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2335 0.0871 -0.0015 6 6 3.6138 -1.1474 -0.0027 7 6 2.2165 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0002 9 8 0.2983 -2.5385 0.1116 10 7 2.2047 -3.6526 -0.1238 11 6 1.5040 -4.9391 -0.1229 12 6 2.5195 -6.0731 -0.2764 13 1 3.1191 -5.9054 -1.1711 14 6 3.4332 -6.1090 0.9504 15 6 1.7799 -7.4067 -0.4007 16 7 2.7443 -8.4769 -0.6669 17 6 2.3109 -9.7671 -0.8178 18 1 1.2582 -9.9958 -0.7403 19 6 3.2246 -10.7811 -1.0705 20 7 4.5075 -10.5024 -1.1655 21 14 2.6335 -12.5412 -1.2757 22 1 1.1569 -12.5883 -1.1252 23 1 3.0090 -13.0354 -2.6248 24 1 3.2646 -13.3991 -0.2409 25 1 -0.3633 -0.1138 1.0214 26 1 -0.3633 0.9413 -0.4121 27 1 -0.3633 -0.8277 -0.6091 28 1 1.6692 2.1262 0.0005 29 1 5.3121 0.1416 -0.0023 30 1 4.1995 -2.0548 -0.0039 31 1 3.1702 -3.6263 -0.2133 32 1 0.9648 -5.0585 0.8169 33 1 0.7982 -4.9690 -0.9531 34 1 2.8337 -6.2768 1.8450 35 1 4.1564 -6.9172 0.8412 36 1 3.9600 -5.1589 1.0389 37 1 1.2512 -7.6170 0.5290 38 1 1.0643 -7.3503 -1.2209 39 1 3.6897 -8.2715 -0.7369 40 1 5.1460 -11.2111 -1.3417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267985825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = 0.520187 kcal Electronic energy + Delta-G solvation = -20614.784401 eV Core-core repulsion = 17429.481367 eV Total energy + Delta-G solvation = -3185.303034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01459 -39.29498 -36.96084 -34.63683 -33.67082 -33.01041 -31.95911 -30.05932 -27.82562 -26.63056 -25.60662 -24.48953 -22.78185 -22.17591 -20.93851 -20.03773 -18.29541 -17.10772 -16.98787 -15.80729 -15.77419 -15.58595 -15.47629 -14.74437 -14.55823 -14.04915 -13.83530 -13.71486 -13.64821 -13.07006 -12.95862 -12.75151 -12.59243 -12.34116 -12.09128 -11.88071 -11.11286 -10.96597 -10.76873 -10.62203 -10.53884 -10.37004 -10.16697 -10.03562 -9.74168 -9.57575 -9.32695 -9.12097 -8.91481 -6.95918 -5.80371 -3.08913 0.40310 0.71672 2.67499 2.91097 3.41467 3.47522 3.49490 3.50303 4.05488 4.28492 4.39302 4.48106 4.56052 4.63667 4.94674 5.03181 5.13698 5.28209 5.30767 5.35879 5.47245 5.51945 5.54536 5.72847 5.75369 5.88065 5.89357 6.00829 6.10264 6.17450 6.27610 6.32392 6.37700 6.59547 6.71437 6.80789 7.28706 7.54731 7.68076 7.96741 8.38697 9.50179 10.06905 10.41583 11.42672 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040016 B = 0.002812 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.543788 B = 9955.010305 C =10493.404173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.092 3.908 4 N -0.467 5.467 5 C 0.086 3.914 6 C -0.136 4.136 7 C -0.093 4.093 8 C 0.554 3.446 9 O -0.526 6.526 10 N -0.716 5.716 11 C 0.126 3.874 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.140 0.860 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 22.724 3.024 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.157 4.157 7 C -0.104 4.104 8 C 0.340 3.660 9 O -0.403 6.403 10 N -0.367 5.367 11 C 0.003 3.997 12 C -0.131 4.131 13 H 0.095 0.905 14 C -0.199 4.199 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.158 0.842 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.962 23.299 3.094 23.689 hybrid contribution 0.279 -1.810 -0.188 1.841 sum -2.683 21.489 2.907 21.850 Atomic orbital electron populations 1.20994 0.88963 1.03490 1.03952 1.21147 0.98507 0.92437 0.95929 1.22753 0.89765 0.97410 0.96662 1.67546 1.08331 1.31854 1.09862 1.22733 1.00639 0.87190 0.96455 1.22388 0.93898 1.00344 0.99059 1.20303 0.93802 0.94013 1.02256 1.18140 0.87014 0.83557 0.77270 1.90742 1.13413 1.87046 1.49129 1.45996 1.11125 1.06085 1.73521 1.21491 0.94988 0.80571 1.02660 1.21571 0.96887 0.95053 0.99541 0.90461 1.21802 0.99811 1.01071 0.97264 1.20566 0.92352 0.86008 0.97800 1.42342 1.05582 1.03164 1.86475 1.19280 0.92842 0.84212 1.40646 0.91084 1.24741 0.95361 0.98129 1.02805 1.69662 1.00426 1.31843 1.56365 0.86107 0.77744 0.84987 0.77311 1.20528 1.21860 1.21852 0.90298 0.91846 0.88532 0.82133 0.82063 0.84210 0.76405 0.90991 0.91011 0.92721 0.91014 0.94015 0.95946 0.96088 0.78208 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.84 36.01 0.32 -0.75 16 2 C -0.08 -0.76 5.93 -104.06 -0.62 -1.38 16 3 C 0.09 0.82 10.83 -17.59 -0.19 0.63 16 4 N -0.47 -4.63 10.33 -13.31 -0.14 -4.77 16 5 C 0.09 0.72 11.17 -17.59 -0.20 0.52 16 6 C -0.14 -1.14 9.60 -39.02 -0.37 -1.51 16 7 C -0.09 -0.97 5.91 -104.64 -0.62 -1.59 16 8 C 0.55 6.81 7.74 -12.19 -0.09 6.71 16 9 O -0.53 -7.86 13.53 5.35 0.07 -7.78 16 10 N -0.72 -7.94 5.24 -61.15 -0.32 -8.26 16 11 C 0.13 1.63 5.06 -4.04 -0.02 1.61 16 12 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 15 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 16 N -0.73 -17.97 5.33 -59.91 -0.32 -18.29 16 17 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.42 8.05 -51.93 -0.42 0.01 16 27 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 28 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.14 0.82 6.58 -52.49 -0.35 0.48 16 31 H 0.40 3.56 5.83 -40.82 -0.24 3.32 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 36 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -32.57 332.88 -7.63 -40.20 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.69 Total: 7.23 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.95 Total: -3.46 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.05 Total: -58.44 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.57 -7.63 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.721 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds