Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38166 * 120.50029 * 2 1 4 4 N 1.31794 * 120.89569 * 180.02562 * 3 2 1 5 5 C 1.31828 * 122.05109 * 0.02562 * 4 3 2 6 6 C 1.38131 * 120.89533 * 0.02562 * 5 4 3 7 7 C 1.39803 * 120.49677 * 180.02562 * 2 1 3 8 8 C 1.48149 * 120.92382 * 359.95878 * 7 2 1 9 9 O 1.21513 * 120.00004 * 353.94224 * 8 7 2 10 10 N 1.34778 * 119.99887 * 173.94932 * 8 7 2 11 11 C 1.46493 * 119.99936 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47292 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47400 * 305.00593 * 12 11 10 14 14 C 1.53006 * 109.46681 * 65.00069 * 12 11 10 15 15 C 1.52999 * 109.47310 * 185.00193 * 12 11 10 16 16 N 1.46496 * 109.47021 * 175.00372 * 15 12 11 17 17 C 1.36936 * 120.00047 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00205 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99993 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47135 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47060 * 119.99591 * 21 19 17 24 24 H 1.48493 * 109.47253 * 240.00259 * 21 19 17 25 25 H 1.09003 * 109.46888 * 263.64246 * 1 2 3 26 26 H 1.08990 * 109.47058 * 23.64348 * 1 2 3 27 27 H 1.08998 * 109.46803 * 143.64822 * 1 2 3 28 28 H 1.07997 * 119.55131 * 0.03123 * 3 2 1 29 29 H 1.07999 * 119.55288 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.50085 * 179.97438 * 6 5 4 31 31 H 0.96999 * 119.99871 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47210 * 299.99864 * 11 10 8 33 33 H 1.09005 * 109.47130 * 60.00008 * 11 10 8 34 34 H 1.08996 * 109.46980 * 60.00614 * 14 12 11 35 35 H 1.09001 * 109.46429 * 179.97438 * 14 12 11 36 36 H 1.08999 * 109.47145 * 300.00130 * 14 12 11 37 37 H 1.09002 * 109.46774 * 295.00171 * 15 12 11 38 38 H 1.08996 * 109.47489 * 55.00008 * 15 12 11 39 39 H 0.97000 * 120.00178 * 359.97438 * 16 15 12 40 40 H 0.97003 * 120.00197 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2335 0.0871 -0.0015 6 6 3.6138 -1.1474 -0.0027 7 6 2.2165 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0002 9 8 0.2983 -2.5385 0.1116 10 7 2.2047 -3.6526 -0.1238 11 6 1.5040 -4.9391 -0.1229 12 6 2.5195 -6.0731 -0.2764 13 1 3.1191 -5.9054 -1.1711 14 6 3.4332 -6.1090 0.9504 15 6 1.7799 -7.4067 -0.4007 16 7 2.7443 -8.4769 -0.6669 17 6 2.3109 -9.7671 -0.8178 18 1 1.2582 -9.9958 -0.7403 19 6 3.2246 -10.7811 -1.0705 20 7 4.5075 -10.5024 -1.1655 21 14 2.6335 -12.5412 -1.2757 22 1 1.1569 -12.5883 -1.1252 23 1 3.0090 -13.0354 -2.6248 24 1 3.2646 -13.3991 -0.2409 25 1 -0.3633 -0.1138 1.0214 26 1 -0.3633 0.9413 -0.4121 27 1 -0.3633 -0.8277 -0.6091 28 1 1.6692 2.1262 0.0005 29 1 5.3121 0.1416 -0.0023 30 1 4.1995 -2.0548 -0.0039 31 1 3.1702 -3.6263 -0.2133 32 1 0.9648 -5.0585 0.8169 33 1 0.7982 -4.9690 -0.9531 34 1 2.8337 -6.2768 1.8450 35 1 4.1564 -6.9172 0.8412 36 1 3.9600 -5.1589 1.0389 37 1 1.2512 -7.6170 0.5290 38 1 1.0643 -7.3503 -1.2209 39 1 3.6897 -8.2715 -0.7369 40 1 5.1460 -11.2111 -1.3417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267985825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = -21.583333 kcal Electronic energy + Delta-G solvation = -20615.742882 eV Core-core repulsion = 17429.481367 eV Total energy + Delta-G solvation = -3186.261514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79420 -40.18135 -38.27346 -36.10634 -34.42917 -34.37997 -33.00286 -31.76438 -28.59723 -27.75035 -27.12743 -25.52212 -24.26805 -23.08492 -21.89218 -21.30017 -19.44436 -18.77724 -17.87170 -16.92960 -16.76105 -16.50327 -16.23538 -16.16693 -15.77850 -15.46000 -15.09472 -14.92561 -14.52857 -14.30827 -14.14510 -13.72725 -13.59870 -13.55891 -13.29243 -12.95857 -12.83268 -12.52907 -12.19948 -12.13224 -12.00720 -11.71868 -11.66492 -11.28799 -10.95757 -10.92399 -10.37703 -10.17324 -9.91718 -8.99619 -7.96133 -5.24149 -0.34663 0.07429 1.47921 1.48026 1.58214 1.79817 1.97196 2.56137 2.80261 3.37986 3.46182 3.51089 3.68115 3.78382 3.82341 3.94715 3.96528 4.06320 4.33518 4.42235 4.53098 4.61030 4.69107 4.71772 4.77177 4.79899 4.84328 4.93088 5.02786 5.08363 5.12290 5.24619 5.36386 5.42737 5.47691 5.50231 5.62933 6.26933 6.39999 6.89731 7.05663 7.33926 8.09050 8.33058 9.27499 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040016 B = 0.002812 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.543788 B = 9955.010305 C =10493.404173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.083 3.917 6 C -0.130 4.130 7 C -0.111 4.111 8 C 0.553 3.447 9 O -0.558 6.558 10 N -0.706 5.706 11 C 0.139 3.861 12 C -0.095 4.095 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.157 3.843 16 N -0.742 5.742 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.971 3.029 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.184 0.816 29 H 0.190 0.810 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.377 0.623 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 23.892 3.187 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.067 4.067 4 N -0.195 5.195 5 C -0.073 4.073 6 C -0.151 4.151 7 C -0.122 4.122 8 C 0.341 3.659 9 O -0.438 6.438 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.114 4.114 13 H 0.098 0.902 14 C -0.194 4.194 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.193 1.193 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.201 0.799 29 H 0.207 0.793 30 H 0.183 0.817 31 H 0.251 0.749 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.210 0.790 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.678 24.493 3.263 24.855 hybrid contribution 0.168 -2.096 -0.228 2.115 sum -2.510 22.397 3.036 22.741 Atomic orbital electron populations 1.20915 0.88883 1.03797 1.03305 1.21298 0.98776 0.92776 0.96374 1.23091 0.89706 0.97954 0.95958 1.67608 1.08767 1.32745 1.10353 1.23240 1.01961 0.86719 0.95339 1.22641 0.93034 1.01545 0.97844 1.20292 0.94847 0.93106 1.03916 1.18447 0.86718 0.84281 0.76472 1.90735 1.14876 1.87545 1.50607 1.45817 1.11693 1.05131 1.73175 1.21199 0.94301 0.80805 1.02247 1.21346 0.96829 0.93121 1.00115 0.90198 1.21743 0.99138 1.01906 0.96627 1.20721 0.91919 0.87029 0.97371 1.42514 1.06098 1.03511 1.86379 1.19654 0.92990 0.85701 1.39338 0.90863 1.25527 0.95594 1.01983 1.03534 1.69801 1.01399 1.32724 1.57907 0.85101 0.77811 0.80249 0.76768 1.19250 1.22004 1.21971 0.90821 0.89439 0.90863 0.79876 0.79307 0.81744 0.74908 0.91332 0.91691 0.92930 0.93799 0.90500 0.96021 0.96195 0.79046 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 8.84 71.24 0.63 -1.36 16 2 C -0.09 -1.66 5.93 -19.50 -0.12 -1.78 16 3 C 0.09 1.45 10.83 84.68 0.92 2.37 16 4 N -0.49 -8.58 10.33 -196.01 -2.03 -10.60 16 5 C 0.08 1.16 11.17 84.67 0.95 2.11 16 6 C -0.13 -1.84 9.60 22.63 0.22 -1.62 16 7 C -0.11 -2.15 5.91 -19.88 -0.12 -2.27 16 8 C 0.55 13.05 7.74 86.88 0.67 13.72 16 9 O -0.56 -16.66 13.53 -3.76 -0.05 -16.71 16 10 N -0.71 -14.43 5.24 -465.68 -2.44 -16.87 16 11 C 0.14 3.43 5.06 86.38 0.44 3.86 16 12 C -0.09 -2.68 2.46 -10.79 -0.03 -2.70 16 13 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.14 -3.64 8.94 71.98 0.64 -3.00 16 15 C 0.16 5.98 5.65 86.38 0.49 6.47 16 16 N -0.74 -36.62 5.33 -343.46 -1.83 -38.45 16 17 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 19 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 20 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 21 Si 0.97 45.82 29.55 68.60 2.03 47.84 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 27 H 0.07 1.67 5.95 -2.39 -0.01 1.66 16 28 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.17 1.36 6.58 -2.91 -0.02 1.34 16 31 H 0.41 6.22 5.83 -92.71 -0.54 5.68 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.43 7.18 -2.39 -0.02 1.41 16 36 H 0.08 1.49 7.18 -2.39 -0.02 1.47 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.38 19.46 6.85 -92.71 -0.64 18.83 16 40 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.10 332.88 1.84 -68.25 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.12 Total: 25.13 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.00 Total: -0.67 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.01 Total: -123.85 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.05 Total: -16.71 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.10 1.84 -68.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.670 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds