Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38170 * 120.50691 * 2 1 4 4 N 1.31796 * 120.89816 * 180.28383 * 3 2 1 5 5 C 1.31828 * 122.04752 * 359.74725 * 4 3 2 6 6 C 1.38124 * 120.89845 * 359.97438 * 5 4 3 7 7 C 1.39797 * 120.49594 * 179.77649 * 2 1 3 8 8 C 1.48149 * 120.92453 * 359.97438 * 7 2 1 9 9 O 1.21518 * 120.00025 * 353.65174 * 8 7 2 10 10 N 1.34777 * 120.00273 * 173.65016 * 8 7 2 11 11 C 1.46500 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47433 * 54.99898 * 12 11 10 14 14 C 1.53005 * 109.47021 * 294.99772 * 12 11 10 15 15 C 1.53003 * 109.47002 * 175.00166 * 12 11 10 16 16 N 1.46500 * 109.47130 * 184.99535 * 15 12 11 17 17 C 1.36935 * 120.00302 * 179.72358 * 16 15 12 18 18 H 1.08000 * 119.99731 * 0.27844 * 17 16 15 19 19 C 1.38810 * 120.00180 * 180.28019 * 17 16 15 20 20 N 1.31621 * 120.00189 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00041 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46918 * 59.99655 * 21 19 17 23 23 H 1.48494 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47019 * 299.99943 * 21 19 17 25 25 H 1.09001 * 109.46582 * 263.89842 * 1 2 3 26 26 H 1.09007 * 109.46754 * 23.89022 * 1 2 3 27 27 H 1.08989 * 109.47269 * 143.89150 * 1 2 3 28 28 H 1.08002 * 119.54742 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.54638 * 180.02562 * 5 4 3 30 30 H 1.07995 * 120.49913 * 180.02562 * 6 5 4 31 31 H 0.97002 * 119.99700 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.46695 * 59.99737 * 11 10 8 33 33 H 1.09001 * 109.46975 * 300.00771 * 11 10 8 34 34 H 1.09002 * 109.46704 * 60.00210 * 14 12 11 35 35 H 1.09006 * 109.47050 * 180.02562 * 14 12 11 36 36 H 1.08996 * 109.47120 * 300.00317 * 14 12 11 37 37 H 1.09007 * 109.47175 * 65.00047 * 15 12 11 38 38 H 1.08996 * 109.47529 * 304.99730 * 15 12 11 39 39 H 0.97000 * 119.99818 * 0.02562 * 16 15 12 40 40 H 0.97000 * 119.99595 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5264 1.1994 -0.0056 5 6 4.2335 0.0869 -0.0065 6 6 3.6137 -1.1475 -0.0010 7 6 2.2165 -1.2046 0.0047 8 6 1.5078 -2.5055 0.0103 9 8 0.2987 -2.5383 0.1273 10 7 2.2040 -3.6528 -0.1143 11 6 1.5031 -4.9393 -0.1093 12 6 2.5180 -6.0736 -0.2637 13 1 3.2779 -5.9896 0.5132 14 6 3.1822 -5.9799 -1.6389 15 6 1.8022 -7.4196 -0.1338 16 7 2.7889 -8.5022 -0.1623 17 6 2.3797 -9.8045 -0.0549 18 1 1.3292 -10.0339 0.0463 19 6 3.3151 -10.8299 -0.0761 20 7 4.5953 -10.5505 -0.1998 21 14 2.7569 -12.6066 0.0712 22 1 1.8417 -12.9325 -1.0520 23 1 3.9399 -13.5028 0.0212 24 1 2.0454 -12.7966 1.3606 25 1 -0.3632 -0.1092 1.0219 26 1 -0.3633 0.9397 -0.4162 27 1 -0.3633 -0.8302 -0.6056 28 1 1.6693 2.1263 0.0004 29 1 5.3120 0.1414 -0.0107 30 1 4.1993 -2.0549 -0.0013 31 1 3.1692 -3.6267 -0.2073 32 1 0.7944 -4.9701 -0.9368 33 1 0.9672 -5.0573 0.8325 34 1 3.6921 -5.0210 -1.7315 35 1 3.9050 -6.7884 -1.7492 36 1 2.4224 -6.0639 -2.4159 37 1 1.1048 -7.5418 -0.9626 38 1 1.2556 -7.4510 0.8087 39 1 3.7324 -8.2961 -0.2528 40 1 5.2489 -11.2671 -0.2150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267985838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = 0.645658 kcal Electronic energy + Delta-G solvation = -20614.261522 eV Core-core repulsion = 17428.963929 eV Total energy + Delta-G solvation = -3185.297593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01373 -39.29359 -36.95808 -34.63331 -33.67106 -33.00917 -31.95672 -30.05634 -27.82503 -26.63007 -25.60208 -24.48744 -22.78028 -22.17265 -20.93646 -20.03657 -18.29385 -17.10316 -16.98220 -15.90835 -15.65874 -15.62036 -15.43180 -14.78297 -14.54489 -14.04893 -13.83803 -13.71216 -13.63403 -13.11756 -12.93785 -12.72130 -12.54765 -12.37199 -12.10887 -11.87509 -11.10719 -10.94545 -10.74599 -10.63230 -10.53234 -10.38443 -10.16601 -10.08615 -9.73165 -9.57466 -9.32645 -9.11995 -8.90191 -6.95775 -5.79814 -3.08457 0.40378 0.71710 2.67533 2.91177 3.42758 3.47125 3.48101 3.50323 4.05558 4.28623 4.39403 4.48107 4.56372 4.63695 4.94798 5.03406 5.13886 5.28298 5.30937 5.35851 5.47352 5.51948 5.54726 5.73048 5.75325 5.88396 5.89618 6.00806 6.10381 6.17877 6.27619 6.32574 6.37789 6.59843 6.71654 6.81024 7.28797 7.54760 7.67349 7.96811 8.39332 9.50583 10.07306 10.42043 11.43110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.002811 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.314779 B = 9960.204579 C =10495.533512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.092 3.908 4 N -0.467 5.467 5 C 0.086 3.914 6 C -0.136 4.136 7 C -0.093 4.093 8 C 0.554 3.446 9 O -0.526 6.526 10 N -0.716 5.716 11 C 0.126 3.874 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.140 0.860 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 22.863 -0.600 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.157 4.157 7 C -0.104 4.104 8 C 0.340 3.660 9 O -0.403 6.403 10 N -0.367 5.367 11 C 0.003 3.997 12 C -0.130 4.130 13 H 0.095 0.905 14 C -0.200 4.200 15 C 0.033 3.967 16 N -0.375 5.375 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.158 0.842 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.216 23.432 -0.509 23.657 hybrid contribution 0.273 -1.819 0.048 1.840 sum -2.943 21.614 -0.462 21.818 Atomic orbital electron populations 1.20990 0.88965 1.03475 1.03947 1.21145 0.98503 0.92438 0.95939 1.22755 0.89766 0.97410 0.96660 1.67549 1.08331 1.31848 1.09864 1.22730 1.00641 0.87191 0.96452 1.22388 0.93899 1.00350 0.99055 1.20303 0.93803 0.94011 1.02252 1.18141 0.87012 0.83560 0.77275 1.90744 1.13445 1.87064 1.49082 1.45999 1.11168 1.06088 1.73472 1.21489 0.95026 0.80574 1.02618 1.21568 0.97737 0.94958 0.98779 0.90465 1.21803 1.01091 1.01004 0.96054 1.20568 0.92301 0.85739 0.98117 1.42325 1.05117 1.01376 1.88718 1.19189 0.92655 0.83085 1.42217 0.91193 1.24737 0.95304 0.98017 1.02902 1.69644 0.99790 1.31542 1.57370 0.86251 0.77149 0.84764 0.77928 1.21242 1.21679 1.21244 0.90280 0.91850 0.88566 0.82134 0.82063 0.84202 0.76406 0.91002 0.91002 0.94003 0.91016 0.92728 0.95952 0.96100 0.78205 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.83 36.01 0.32 -0.75 16 2 C -0.08 -0.76 5.93 -104.06 -0.62 -1.38 16 3 C 0.09 0.82 10.84 -17.59 -0.19 0.63 16 4 N -0.47 -4.64 10.34 -13.31 -0.14 -4.77 16 5 C 0.09 0.72 11.17 -17.59 -0.20 0.52 16 6 C -0.14 -1.14 9.60 -39.02 -0.37 -1.51 16 7 C -0.09 -0.97 5.91 -104.65 -0.62 -1.59 16 8 C 0.55 6.81 7.73 -12.19 -0.09 6.72 16 9 O -0.53 -7.86 13.54 5.35 0.07 -7.79 16 10 N -0.72 -7.95 5.24 -61.16 -0.32 -8.27 16 11 C 0.13 1.64 5.06 -4.05 -0.02 1.62 16 12 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.14 -2.00 8.94 37.16 0.33 -1.67 16 15 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 16 N -0.73 -17.99 5.33 -59.91 -0.32 -18.31 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.42 8.06 -51.92 -0.42 0.00 16 27 H 0.10 1.08 5.96 -51.94 -0.31 0.77 16 28 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.14 0.83 6.58 -52.49 -0.35 0.48 16 31 H 0.40 3.56 5.83 -40.82 -0.24 3.32 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 35 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -32.55 332.90 -7.63 -40.18 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.69 Total: 7.34 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.95 Total: -3.49 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.05 Total: -58.50 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.55 -7.63 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.828 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds