Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38170 * 120.50691 * 2 1 4 4 N 1.31796 * 120.89816 * 180.28383 * 3 2 1 5 5 C 1.31828 * 122.04752 * 359.74725 * 4 3 2 6 6 C 1.38124 * 120.89845 * 359.97438 * 5 4 3 7 7 C 1.39797 * 120.49594 * 179.77649 * 2 1 3 8 8 C 1.48149 * 120.92453 * 359.97438 * 7 2 1 9 9 O 1.21518 * 120.00025 * 353.65174 * 8 7 2 10 10 N 1.34777 * 120.00273 * 173.65016 * 8 7 2 11 11 C 1.46500 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47433 * 54.99898 * 12 11 10 14 14 C 1.53005 * 109.47021 * 294.99772 * 12 11 10 15 15 C 1.53003 * 109.47002 * 175.00166 * 12 11 10 16 16 N 1.46500 * 109.47130 * 184.99535 * 15 12 11 17 17 C 1.36935 * 120.00302 * 179.72358 * 16 15 12 18 18 H 1.08000 * 119.99731 * 0.27844 * 17 16 15 19 19 C 1.38810 * 120.00180 * 180.28019 * 17 16 15 20 20 N 1.31621 * 120.00189 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00041 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46918 * 59.99655 * 21 19 17 23 23 H 1.48494 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47019 * 299.99943 * 21 19 17 25 25 H 1.09001 * 109.46582 * 263.89842 * 1 2 3 26 26 H 1.09007 * 109.46754 * 23.89022 * 1 2 3 27 27 H 1.08989 * 109.47269 * 143.89150 * 1 2 3 28 28 H 1.08002 * 119.54742 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.54638 * 180.02562 * 5 4 3 30 30 H 1.07995 * 120.49913 * 180.02562 * 6 5 4 31 31 H 0.97002 * 119.99700 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.46695 * 59.99737 * 11 10 8 33 33 H 1.09001 * 109.46975 * 300.00771 * 11 10 8 34 34 H 1.09002 * 109.46704 * 60.00210 * 14 12 11 35 35 H 1.09006 * 109.47050 * 180.02562 * 14 12 11 36 36 H 1.08996 * 109.47120 * 300.00317 * 14 12 11 37 37 H 1.09007 * 109.47175 * 65.00047 * 15 12 11 38 38 H 1.08996 * 109.47529 * 304.99730 * 15 12 11 39 39 H 0.97000 * 119.99818 * 0.02562 * 16 15 12 40 40 H 0.97000 * 119.99595 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5264 1.1994 -0.0056 5 6 4.2335 0.0869 -0.0065 6 6 3.6137 -1.1475 -0.0010 7 6 2.2165 -1.2046 0.0047 8 6 1.5078 -2.5055 0.0103 9 8 0.2987 -2.5383 0.1273 10 7 2.2040 -3.6528 -0.1143 11 6 1.5031 -4.9393 -0.1093 12 6 2.5180 -6.0736 -0.2637 13 1 3.2779 -5.9896 0.5132 14 6 3.1822 -5.9799 -1.6389 15 6 1.8022 -7.4196 -0.1338 16 7 2.7889 -8.5022 -0.1623 17 6 2.3797 -9.8045 -0.0549 18 1 1.3292 -10.0339 0.0463 19 6 3.3151 -10.8299 -0.0761 20 7 4.5953 -10.5505 -0.1998 21 14 2.7569 -12.6066 0.0712 22 1 1.8417 -12.9325 -1.0520 23 1 3.9399 -13.5028 0.0212 24 1 2.0454 -12.7966 1.3606 25 1 -0.3632 -0.1092 1.0219 26 1 -0.3633 0.9397 -0.4162 27 1 -0.3633 -0.8302 -0.6056 28 1 1.6693 2.1263 0.0004 29 1 5.3120 0.1414 -0.0107 30 1 4.1993 -2.0549 -0.0013 31 1 3.1692 -3.6267 -0.2073 32 1 0.7944 -4.9701 -0.9368 33 1 0.9672 -5.0573 0.8325 34 1 3.6921 -5.0210 -1.7315 35 1 3.9050 -6.7884 -1.7492 36 1 2.4224 -6.0639 -2.4159 37 1 1.1048 -7.5418 -0.9626 38 1 1.2556 -7.4510 0.8087 39 1 3.7324 -8.2961 -0.2528 40 1 5.2489 -11.2671 -0.2150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267985838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = -21.434438 kcal Electronic energy + Delta-G solvation = -20615.218987 eV Core-core repulsion = 17428.963929 eV Total energy + Delta-G solvation = -3186.255057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79431 -40.18147 -38.27250 -36.10340 -34.42953 -34.38029 -33.00278 -31.76297 -28.59740 -27.75220 -27.12487 -25.52006 -24.26576 -23.08531 -21.89138 -21.30105 -19.44219 -18.77608 -17.86240 -17.00498 -16.64447 -16.54645 -16.24507 -16.13185 -15.82396 -15.44271 -15.08132 -14.93991 -14.53852 -14.31265 -14.12449 -13.71156 -13.60333 -13.55722 -13.30226 -12.96371 -12.77633 -12.52568 -12.22392 -12.18279 -12.00883 -11.72554 -11.66311 -11.28962 -10.93566 -10.92442 -10.37873 -10.17327 -9.91762 -8.99535 -7.95672 -5.23822 -0.34711 0.07368 1.47817 1.50300 1.56428 1.79766 1.97116 2.56535 2.80172 3.38086 3.46166 3.51063 3.68099 3.78461 3.82291 3.94797 3.96279 4.06237 4.33708 4.42250 4.52889 4.61020 4.69149 4.71727 4.77159 4.79877 4.84230 4.92962 5.02557 5.08359 5.12251 5.24532 5.36349 5.42603 5.47423 5.49799 5.62883 6.27090 6.39941 6.89664 7.05588 7.34125 8.09365 8.33439 9.27569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.002811 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.314779 B = 9960.204579 C =10495.533512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.083 3.917 6 C -0.131 4.131 7 C -0.111 4.111 8 C 0.553 3.447 9 O -0.558 6.558 10 N -0.706 5.706 11 C 0.139 3.861 12 C -0.095 4.095 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.157 3.843 16 N -0.741 5.741 17 C -0.248 4.248 18 H 0.073 0.927 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.972 3.028 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.279 1.279 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.184 0.816 29 H 0.190 0.810 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.377 0.623 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 24.023 -0.640 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.067 4.067 4 N -0.195 5.195 5 C -0.073 4.073 6 C -0.151 4.151 7 C -0.121 4.121 8 C 0.341 3.659 9 O -0.438 6.438 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.114 4.114 13 H 0.099 0.901 14 C -0.194 4.194 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.205 1.205 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.201 0.799 29 H 0.207 0.793 30 H 0.182 0.818 31 H 0.251 0.749 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.210 0.790 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.951 24.618 -0.551 24.801 hybrid contribution 0.164 -2.101 0.061 2.108 sum -2.787 22.517 -0.490 22.694 Atomic orbital electron populations 1.20913 0.88874 1.03818 1.03280 1.21296 0.98778 0.92767 0.96370 1.23095 0.89703 0.97959 0.95944 1.67611 1.08771 1.32729 1.10354 1.23235 1.01959 0.86719 0.95341 1.22637 0.93042 1.01540 0.97862 1.20291 0.94837 0.93108 1.03912 1.18449 0.86716 0.84285 0.76474 1.90737 1.14910 1.87565 1.50558 1.45819 1.11735 1.05131 1.73132 1.21198 0.94370 0.80810 1.02173 1.21343 0.97658 0.92991 0.99400 0.90149 1.21742 1.00487 1.01797 0.95378 1.20722 0.91755 0.86781 0.97774 1.42497 1.05692 1.01740 1.88557 1.19588 0.92861 0.84637 1.40903 0.90881 1.25531 0.95477 1.01966 1.03588 1.69791 1.00713 1.32345 1.58976 0.85236 0.76575 0.79945 0.78152 1.20485 1.22037 1.20494 0.90879 0.89410 0.90835 0.79864 0.79319 0.81776 0.74908 0.91349 0.91674 0.90578 0.93783 0.92950 0.96042 0.96205 0.79048 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 8.83 71.24 0.63 -1.36 16 2 C -0.09 -1.66 5.93 -19.50 -0.12 -1.77 16 3 C 0.09 1.45 10.84 84.68 0.92 2.37 16 4 N -0.49 -8.58 10.34 -196.01 -2.03 -10.61 16 5 C 0.08 1.17 11.17 84.67 0.95 2.11 16 6 C -0.13 -1.85 9.60 22.63 0.22 -1.63 16 7 C -0.11 -2.15 5.91 -19.88 -0.12 -2.27 16 8 C 0.55 13.07 7.73 86.88 0.67 13.74 16 9 O -0.56 -16.68 13.54 -3.77 -0.05 -16.73 16 10 N -0.71 -14.46 5.24 -465.69 -2.44 -16.90 16 11 C 0.14 3.43 5.06 86.38 0.44 3.87 16 12 C -0.09 -2.68 2.46 -10.79 -0.03 -2.71 16 13 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.14 -3.67 8.94 71.98 0.64 -3.02 16 15 C 0.16 6.00 5.65 86.38 0.49 6.49 16 16 N -0.74 -36.67 5.33 -343.45 -1.83 -38.50 16 17 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 18 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 20 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 21 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.05 8.06 -2.38 -0.02 1.03 16 27 H 0.07 1.67 5.96 -2.39 -0.01 1.65 16 28 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.16 1.39 6.58 -2.91 -0.02 1.37 16 31 H 0.41 6.24 5.83 -92.71 -0.54 5.70 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.50 7.18 -2.39 -0.02 1.48 16 35 H 0.04 1.44 7.18 -2.38 -0.02 1.42 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.38 19.49 6.85 -92.71 -0.64 18.85 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -70.03 332.90 1.84 -68.19 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.12 Total: 25.51 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.00 Total: -0.80 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.01 Total: -123.97 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.73 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.03 1.84 -68.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.751 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds