Wall clock time and date at job start Mon Mar 30 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38608 * 120.32230 * 2 1 4 4 N 1.31494 * 120.89762 * 179.97438 * 3 2 1 5 5 C 1.32753 * 121.64557 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72191 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99585 * 179.97438 * 6 5 4 8 8 N 1.34769 * 119.99829 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 13 13 N 1.46500 * 109.47170 * 54.99826 * 12 9 8 14 14 C 1.36937 * 120.00196 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00394 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47624 * 59.99868 * 18 16 14 20 20 H 1.48500 * 109.47270 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46796 * 300.00094 * 18 16 14 22 22 C 1.39267 * 120.55254 * 0.26927 * 5 4 3 23 23 C 1.38579 * 120.32248 * 179.97438 * 2 1 3 24 24 C 1.50692 * 120.75912 * 0.04029 * 23 2 1 25 25 H 1.09007 * 109.46985 * 89.99439 * 1 2 3 26 26 H 1.08998 * 109.46982 * 209.99338 * 1 2 3 27 27 H 1.08998 * 109.46974 * 329.99592 * 1 2 3 28 28 H 1.07997 * 119.54984 * 359.96041 * 3 2 1 29 29 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 30 30 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 31 31 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 32 32 H 1.09002 * 109.47075 * 59.99363 * 11 9 8 33 33 H 1.08998 * 109.47192 * 174.99746 * 12 9 8 34 34 H 1.09000 * 109.47325 * 294.99862 * 12 9 8 35 35 H 0.97004 * 120.00188 * 0.02562 * 13 12 9 36 36 H 0.97000 * 120.00161 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.47137 * 179.70502 * 22 5 4 38 38 H 1.09003 * 109.47638 * 90.00276 * 24 23 2 39 39 H 1.09003 * 109.47603 * 210.00453 * 24 23 2 40 40 H 1.08998 * 109.47345 * 330.00101 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0005 5 6 4.2295 0.0866 0.0005 6 6 5.7098 0.1512 0.0005 7 8 6.3626 -0.8737 0.0010 8 7 6.3321 1.3466 0.0000 9 6 7.7957 1.4104 -0.0006 10 1 8.1956 0.5854 0.5890 11 6 8.3103 1.3067 -1.4377 12 6 8.2485 2.7389 0.6085 13 7 7.6576 2.8922 1.9402 14 6 7.9232 4.0118 2.6825 15 1 8.5680 4.7822 2.2859 16 6 7.3629 4.1572 3.9442 17 7 6.5767 3.2187 4.4273 18 14 7.7247 5.6850 4.9564 19 1 7.2639 6.8884 4.2184 20 1 7.0119 5.5978 6.2562 21 1 9.1864 5.7830 5.1995 22 6 3.5924 -1.1518 -0.0056 23 6 2.2067 -1.1962 0.0005 24 6 1.4780 -2.5152 0.0002 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6648 2.1305 -0.0006 29 1 5.8110 2.1647 -0.0008 30 1 9.3992 1.3537 -1.4381 31 1 7.9877 0.3603 -1.8717 32 1 7.9103 2.1317 -2.0273 33 1 9.3354 2.7496 0.6898 34 1 7.9238 3.5607 -0.0298 35 1 7.0788 2.2001 2.2966 36 1 6.1855 3.3202 5.3090 37 1 4.1695 -2.0646 -0.0104 38 1 1.3029 -2.8335 -1.0275 39 1 2.0809 -3.2636 0.5145 40 1 0.5230 -2.4029 0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268696800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:38 Heat of formation + Delta-G solvation = -2.003707 kcal Electronic energy + Delta-G solvation = -21153.599312 eV Core-core repulsion = 17968.186834 eV Total energy + Delta-G solvation = -3185.412478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65055 -38.99318 -36.10803 -34.72583 -33.54904 -32.47221 -31.22030 -29.90122 -28.52021 -27.20925 -25.62477 -23.35987 -22.82770 -22.43818 -20.62788 -19.87924 -17.69049 -17.09853 -16.74781 -15.64034 -15.25294 -15.07760 -14.91488 -14.59226 -14.27580 -13.63458 -13.58498 -13.29814 -13.15367 -13.10910 -12.87277 -12.65886 -12.29287 -12.16536 -12.11761 -12.03254 -11.65618 -11.54400 -10.86378 -10.77819 -10.43203 -10.04279 -9.99483 -9.69058 -9.53426 -9.36930 -8.99478 -8.86233 -8.58611 -6.90519 -5.72285 -3.02155 0.69873 1.19146 2.94656 3.43930 3.46883 3.50428 3.51767 3.96950 4.27223 4.52310 4.61277 4.68227 4.73373 4.77437 5.20713 5.23033 5.29857 5.33684 5.38644 5.46333 5.54705 5.57111 5.59876 5.71055 5.76920 5.79706 5.95334 6.07149 6.15381 6.18776 6.24624 6.45240 6.53843 6.59973 6.75329 6.99914 7.71932 7.72784 8.04901 8.45073 8.56300 9.56707 10.13509 10.48846 11.49994 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.004619 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.775308 B = 6060.021523 C = 7252.563917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.125 4.125 3 C 0.104 3.896 4 N -0.451 5.451 5 C 0.083 3.917 6 C 0.571 3.429 7 O -0.545 6.545 8 N -0.688 5.688 9 C 0.130 3.870 10 H 0.088 0.912 11 C -0.157 4.157 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.111 4.111 23 C -0.056 4.056 24 C -0.117 4.117 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.415 0.585 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.025 0.975 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 -8.731 -12.646 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.057 4.057 4 N -0.162 5.162 5 C -0.054 4.054 6 C 0.355 3.645 7 O -0.423 6.423 8 N -0.338 5.338 9 C 0.026 3.974 10 H 0.106 0.894 11 C -0.216 4.216 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.132 4.132 23 C -0.064 4.064 24 C -0.173 4.173 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.178 0.822 29 H 0.252 0.748 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.164 0.836 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.781 -8.491 -12.575 18.614 hybrid contribution -0.689 0.337 0.852 1.146 sum -11.469 -8.154 -11.724 18.316 Atomic orbital electron populations 1.20804 0.90111 1.03448 1.02640 1.20995 0.97634 0.93705 1.00377 1.22697 0.89391 0.97557 0.96013 1.67591 1.08575 1.30236 1.09756 1.21196 0.94495 0.89511 1.00242 1.17831 0.85684 0.84181 0.76782 1.90737 1.65919 1.34304 1.51373 1.45853 1.07659 1.08554 1.71710 1.21327 0.79206 1.00453 0.96447 0.89399 1.22099 1.01281 1.01875 0.96308 1.20979 0.96704 0.92491 0.88158 1.42352 1.58056 1.23533 1.13679 1.19176 1.24195 0.97005 0.97020 0.91178 1.24747 1.00042 0.98278 0.97703 1.69668 1.35992 1.33856 1.18369 0.86264 0.77594 0.82704 0.79570 1.21263 1.21744 1.21287 1.21977 0.94072 0.99118 0.98024 1.20154 0.93273 0.95739 0.97197 1.20858 1.00419 0.93143 1.02870 0.90712 0.90904 0.90900 0.82205 0.74840 0.91532 0.92454 0.92496 0.94791 0.95723 0.77963 0.93502 0.83617 0.90493 0.90829 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.65 36.01 0.35 -0.45 16 2 C -0.12 -1.36 5.91 -104.36 -0.62 -1.97 16 3 C 0.10 1.33 10.86 -17.56 -0.19 1.14 16 4 N -0.45 -7.28 9.54 -9.80 -0.09 -7.38 16 5 C 0.08 1.40 6.75 -83.01 -0.56 0.84 16 6 C 0.57 10.74 7.78 -12.19 -0.09 10.64 16 7 O -0.55 -11.20 15.99 5.35 0.09 -11.12 16 8 N -0.69 -12.70 4.51 -54.65 -0.25 -12.94 16 9 C 0.13 2.36 2.73 -67.93 -0.19 2.17 16 10 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 11 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 12 C 0.14 2.97 5.82 -4.04 -0.02 2.94 16 13 N -0.73 -19.00 5.43 -59.91 -0.33 -19.33 16 14 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 C -0.11 -1.57 9.34 -39.05 -0.36 -1.94 16 23 C -0.06 -0.64 5.91 -104.35 -0.62 -1.25 16 24 C -0.12 -0.90 9.67 36.00 0.35 -0.55 16 25 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.07 0.44 6.06 -51.93 -0.31 0.13 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.41 7.77 7.93 -40.82 -0.32 7.45 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.39 10.81 7.33 -40.82 -0.30 10.51 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.07 0.47 6.07 -51.93 -0.32 0.16 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -33.71 338.80 -7.44 -41.15 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.82 Total: 12.81 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.85 Total: 2.13 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: 0.06 Total: -67.78 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.71 -7.44 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268696800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.146 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds