Wall clock time and date at job start Mon Mar 30 2020 01:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38608 * 120.32230 * 2 1 4 4 N 1.31494 * 120.89762 * 179.97438 * 3 2 1 5 5 C 1.32753 * 121.64557 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72191 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99585 * 179.97438 * 6 5 4 8 8 N 1.34769 * 119.99829 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 13 13 N 1.46500 * 109.47170 * 54.99826 * 12 9 8 14 14 C 1.36937 * 120.00196 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00394 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47624 * 59.99868 * 18 16 14 20 20 H 1.48500 * 109.47270 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46796 * 300.00094 * 18 16 14 22 22 C 1.39267 * 120.55254 * 0.26927 * 5 4 3 23 23 C 1.38579 * 120.32248 * 179.97438 * 2 1 3 24 24 C 1.50692 * 120.75912 * 0.04029 * 23 2 1 25 25 H 1.09007 * 109.46985 * 89.99439 * 1 2 3 26 26 H 1.08998 * 109.46982 * 209.99338 * 1 2 3 27 27 H 1.08998 * 109.46974 * 329.99592 * 1 2 3 28 28 H 1.07997 * 119.54984 * 359.96041 * 3 2 1 29 29 H 0.97000 * 120.00680 * 359.97438 * 8 6 5 30 30 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 31 31 H 1.09000 * 109.46986 * 300.00092 * 11 9 8 32 32 H 1.09002 * 109.47075 * 59.99363 * 11 9 8 33 33 H 1.08998 * 109.47192 * 174.99746 * 12 9 8 34 34 H 1.09000 * 109.47325 * 294.99862 * 12 9 8 35 35 H 0.97004 * 120.00188 * 0.02562 * 13 12 9 36 36 H 0.97000 * 120.00161 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.47137 * 179.70502 * 22 5 4 38 38 H 1.09003 * 109.47638 * 90.00276 * 24 23 2 39 39 H 1.09003 * 109.47603 * 210.00453 * 24 23 2 40 40 H 1.08998 * 109.47345 * 330.00101 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0005 5 6 4.2295 0.0866 0.0005 6 6 5.7098 0.1512 0.0005 7 8 6.3626 -0.8737 0.0010 8 7 6.3321 1.3466 0.0000 9 6 7.7957 1.4104 -0.0006 10 1 8.1956 0.5854 0.5890 11 6 8.3103 1.3067 -1.4377 12 6 8.2485 2.7389 0.6085 13 7 7.6576 2.8922 1.9402 14 6 7.9232 4.0118 2.6825 15 1 8.5680 4.7822 2.2859 16 6 7.3629 4.1572 3.9442 17 7 6.5767 3.2187 4.4273 18 14 7.7247 5.6850 4.9564 19 1 7.2639 6.8884 4.2184 20 1 7.0119 5.5978 6.2562 21 1 9.1864 5.7830 5.1995 22 6 3.5924 -1.1518 -0.0056 23 6 2.2067 -1.1962 0.0005 24 6 1.4780 -2.5152 0.0002 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6648 2.1305 -0.0006 29 1 5.8110 2.1647 -0.0008 30 1 9.3992 1.3537 -1.4381 31 1 7.9877 0.3603 -1.8717 32 1 7.9103 2.1317 -2.0273 33 1 9.3354 2.7496 0.6898 34 1 7.9238 3.5607 -0.0298 35 1 7.0788 2.2001 2.2966 36 1 6.1855 3.3202 5.3090 37 1 4.1695 -2.0646 -0.0104 38 1 1.3029 -2.8335 -1.0275 39 1 2.0809 -3.2636 0.5145 40 1 0.5230 -2.4029 0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268696800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:37 Heat of formation + Delta-G solvation = -25.580906 kcal Electronic energy + Delta-G solvation = -21154.621696 eV Core-core repulsion = 17968.186834 eV Total energy + Delta-G solvation = -3186.434862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77180 -40.33144 -37.73941 -35.72761 -35.40280 -33.44267 -32.99558 -31.55021 -29.36440 -28.06087 -27.43759 -24.78395 -24.11652 -23.77820 -22.02373 -21.24177 -19.32795 -18.71109 -17.99705 -17.00712 -16.74990 -16.34213 -16.16454 -15.91392 -15.45752 -15.28328 -15.13725 -14.86306 -14.05145 -13.94646 -13.74951 -13.67982 -13.66455 -13.60102 -13.38275 -13.09140 -12.75122 -12.71131 -12.66955 -12.45324 -12.21182 -11.92082 -11.73123 -11.37206 -10.96402 -10.51365 -10.48601 -10.18888 -9.85602 -9.03241 -7.94534 -5.25288 -0.38539 0.21188 1.46839 1.50730 1.56676 1.66804 2.10252 2.55824 2.81906 3.15245 3.39354 3.66655 3.74165 3.81376 3.88120 3.91786 4.01074 4.26064 4.27780 4.47487 4.53951 4.63849 4.70924 4.75183 4.78577 4.82984 4.89452 4.90464 4.99874 5.07668 5.12556 5.21748 5.27023 5.36947 5.48140 5.51889 5.70608 6.24996 6.40983 6.81254 7.12689 7.31770 8.05126 8.29213 9.28693 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.004619 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.775308 B = 6060.021523 C = 7252.563917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C 0.088 3.912 4 N -0.480 5.480 5 C 0.047 3.953 6 C 0.565 3.435 7 O -0.574 6.574 8 N -0.689 5.689 9 C 0.135 3.865 10 H 0.064 0.936 11 C -0.145 4.145 12 C 0.146 3.854 13 N -0.745 5.745 14 C -0.248 4.248 15 H 0.081 0.919 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.978 3.022 19 H -0.275 1.275 20 H -0.297 1.297 21 H -0.277 1.277 22 C -0.119 4.119 23 C -0.057 4.057 24 C -0.114 4.114 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.184 0.816 29 H 0.412 0.588 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 -8.291 -13.571 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.113 4.113 3 C -0.072 4.072 4 N -0.192 5.192 5 C -0.089 4.089 6 C 0.351 3.649 7 O -0.454 6.454 8 N -0.338 5.338 9 C 0.030 3.970 10 H 0.082 0.918 11 C -0.203 4.203 12 C 0.019 3.981 13 N -0.388 5.388 14 C -0.379 4.379 15 H 0.099 0.901 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.806 3.194 19 H -0.201 1.201 20 H -0.224 1.224 21 H -0.203 1.203 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.170 4.170 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.201 0.799 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.204 0.796 36 H 0.059 0.941 37 H 0.161 0.839 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.292 -8.035 -13.549 19.981 hybrid contribution -0.284 0.177 1.077 1.128 sum -12.576 -7.858 -12.472 19.377 Atomic orbital electron populations 1.20938 0.86762 1.04835 1.04260 1.21456 0.99845 0.92599 0.97390 1.23247 0.88565 0.99611 0.95819 1.67488 1.10320 1.30387 1.10972 1.20973 0.93338 0.90882 1.03725 1.18269 0.86959 0.83711 0.75964 1.90692 1.66904 1.34962 1.52875 1.45868 1.07718 1.08501 1.71696 1.21262 0.79293 0.98185 0.98241 0.91776 1.22002 1.02496 1.02208 0.93608 1.21139 0.96869 0.94088 0.85980 1.42553 1.58164 1.22611 1.15497 1.19647 1.23376 0.97619 0.97307 0.90093 1.25621 1.00460 1.01494 0.99145 1.69855 1.37698 1.36106 1.18498 0.85154 0.77565 0.79189 0.77466 1.20057 1.22377 1.20338 1.22102 0.95651 0.98046 0.98227 1.20606 0.92200 0.97880 0.95795 1.20967 1.00822 0.90896 1.04343 0.88686 0.89227 0.89855 0.79904 0.75130 0.89460 0.92868 0.91079 0.93759 0.94385 0.79646 0.94148 0.83896 0.88666 0.90731 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.65 71.24 0.69 -0.47 16 2 C -0.11 -2.18 5.91 -19.69 -0.12 -2.30 16 3 C 0.09 2.20 10.86 84.83 0.92 3.12 16 4 N -0.48 -15.95 9.54 -184.91 -1.76 -17.72 16 5 C 0.05 1.65 6.75 41.89 0.28 1.93 16 6 C 0.56 22.45 7.78 86.88 0.68 23.12 16 7 O -0.57 -24.92 15.99 -3.76 -0.06 -24.98 16 8 N -0.69 -26.51 4.51 -445.10 -2.01 -28.52 16 9 C 0.13 4.98 2.73 44.99 0.12 5.10 16 10 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 11 C -0.14 -4.11 9.48 71.98 0.68 -3.43 16 12 C 0.15 5.96 5.82 86.38 0.50 6.47 16 13 N -0.75 -39.40 5.43 -343.45 -1.87 -41.27 16 14 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -61.64 13.06 21.65 0.28 -61.35 16 18 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 C -0.12 -3.46 9.34 22.61 0.21 -3.24 16 23 C -0.06 -1.22 5.91 -19.69 -0.12 -1.34 16 24 C -0.11 -1.45 9.67 71.23 0.69 -0.76 16 25 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.09 0.68 6.06 -2.39 -0.01 0.67 16 27 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 28 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.41 16.13 7.93 -92.71 -0.74 15.39 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.37 21.60 7.33 -92.71 -0.68 20.92 16 36 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.14 4.06 7.64 -2.91 -0.02 4.04 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 40 H 0.10 0.83 6.07 -2.39 -0.01 0.82 16 Total: -1.00 -74.94 338.80 2.11 -72.83 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.36 Total: 41.10 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.85 Total: 10.96 kcal Atomic # 7 Polarization: -143.50 SS G_CDS: -5.35 Total: -148.86 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -74.94 2.11 -72.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268696800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.250 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds