Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34490 * 126.82856 * 2 1 4 4 N 1.36448 * 108.85005 * 180.25047 * 3 2 1 5 5 H 0.97001 * 124.84602 * 179.77072 * 4 3 2 6 6 C 1.34651 * 110.30037 * 359.75129 * 4 3 2 7 7 C 1.36772 * 108.40115 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.94784 * 179.97438 * 7 6 4 9 9 O 1.21621 * 120.00037 * 186.50295 * 8 7 6 10 10 N 1.34778 * 119.99661 * 6.50316 * 8 7 6 11 11 C 1.47426 * 125.65061 * 6.17007 * 10 8 7 12 12 C 1.54908 * 104.83367 * 155.91702 * 11 10 8 13 13 C 1.55161 * 101.58006 * 37.00679 * 12 11 10 14 14 C 1.47023 * 125.64696 * 186.22248 * 10 8 7 15 15 H 1.09002 * 110.00733 * 300.50033 * 14 10 8 16 16 C 1.52990 * 109.88247 * 61.59365 * 14 10 8 17 17 N 1.46501 * 109.47520 * 284.35612 * 16 14 10 18 18 C 1.36939 * 120.00173 * 172.38097 * 17 16 14 19 19 H 1.07996 * 119.99994 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99851 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00149 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47291 * 300.00590 * 22 20 18 25 25 H 1.48510 * 109.46880 * 60.00370 * 22 20 18 26 26 H 1.08994 * 109.47626 * 270.14709 * 1 2 3 27 27 H 1.08999 * 109.47230 * 30.15200 * 1 2 3 28 28 H 1.09008 * 109.47058 * 150.14753 * 1 2 3 29 29 H 1.07996 * 125.57251 * 359.96554 * 3 2 1 30 30 H 1.08003 * 125.80257 * 179.97438 * 6 4 3 31 31 H 1.08997 * 110.36796 * 37.07391 * 11 10 8 32 32 H 1.09006 * 110.45909 * 274.80336 * 11 10 8 33 33 H 1.08997 * 111.00366 * 278.93242 * 12 11 10 34 34 H 1.09004 * 111.03523 * 155.09308 * 12 11 10 35 35 H 1.09004 * 110.71625 * 206.13238 * 13 12 11 36 36 H 1.09000 * 110.71960 * 82.86676 * 13 12 11 37 37 H 1.09001 * 109.47202 * 164.35643 * 16 14 10 38 38 H 1.09001 * 109.47285 * 44.35842 * 16 14 10 39 39 H 0.96993 * 119.99825 * 352.38496 * 17 16 14 40 40 H 0.97002 * 119.99533 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6553 -0.0056 5 1 4.3839 1.2415 -0.0100 6 6 3.6656 -0.6901 -0.0039 7 6 2.3864 -1.1740 0.0036 8 6 1.9750 -2.5880 0.0074 9 8 0.7996 -2.8796 -0.1051 10 7 2.9010 -3.5589 0.1357 11 6 4.3346 -3.3484 0.4073 12 6 4.8126 -4.6693 1.0603 13 6 3.9924 -5.7225 0.2692 14 6 2.6488 -5.0032 0.0268 15 1 1.9219 -5.3126 0.7778 16 6 2.1254 -5.3360 -1.3717 17 7 0.7235 -4.9245 -1.4793 18 6 0.0850 -4.9784 -2.6895 19 1 0.6149 -5.3239 -3.5648 20 6 -1.2432 -4.5879 -2.7915 21 7 -1.8887 -4.1653 -1.7251 22 14 -2.1140 -4.6608 -4.4425 23 1 -3.5150 -4.1943 -4.2842 24 1 -1.4077 -3.7874 -5.4137 25 1 -2.1120 -6.0594 -4.9419 26 1 -0.3634 0.0026 1.0276 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5116 29 1 1.9867 2.1059 -0.0005 30 1 4.5664 -1.2859 -0.0077 31 1 4.4720 -2.5139 1.0948 32 1 4.8757 -3.1668 -0.5214 33 1 4.5612 -4.6943 2.1206 34 1 5.8825 -4.8148 0.9110 35 1 3.8456 -6.6236 0.8648 36 1 4.4794 -5.9593 -0.6768 37 1 2.2029 -6.4098 -1.5427 38 1 2.7180 -4.8057 -2.1172 39 1 0.2476 -4.6137 -0.6933 40 1 -1.4363 -4.1271 -0.8678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270303300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = 44.452594 kcal Electronic energy + Delta-G solvation = -22479.075335 eV Core-core repulsion = 19295.677353 eV Total energy + Delta-G solvation = -3183.397981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05051 -39.36749 -36.72947 -34.39908 -32.13198 -31.80087 -31.12144 -29.30941 -28.27177 -26.27240 -24.80998 -23.41808 -22.30662 -21.32387 -20.63745 -19.36947 -18.45851 -17.47510 -16.87729 -16.27947 -15.94699 -14.86125 -14.45346 -13.90898 -13.82092 -13.46311 -13.38630 -13.21921 -13.08314 -12.81127 -12.70303 -12.37177 -12.27585 -11.94249 -11.80693 -11.43758 -11.10269 -10.94716 -10.76825 -10.56420 -10.48897 -10.22938 -9.76081 -9.02267 -8.77504 -8.56422 -8.36238 -8.10022 -7.99887 -6.53829 -5.70837 -2.65961 2.06253 2.64391 3.25787 3.53441 3.67434 3.73275 3.90245 4.11526 4.61203 4.69259 4.92337 4.96849 5.00038 5.14353 5.34166 5.37479 5.43746 5.56193 5.64849 5.75100 5.80783 5.88823 5.95225 6.02521 6.07302 6.13957 6.26589 6.27903 6.40979 6.52038 6.58813 6.71910 6.88262 7.06560 7.10156 7.18088 7.55859 8.11100 8.16353 9.00698 9.22570 9.76851 10.59179 10.77793 11.80421 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.007374 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.492308 B = 3796.036362 C = 5369.935953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.101 4.101 3 C -0.036 4.036 4 N -0.555 5.555 5 H 0.412 0.588 6 C 0.021 3.979 7 C -0.206 4.206 8 C 0.591 3.409 9 O -0.483 6.483 10 N -0.616 5.616 11 C 0.095 3.905 12 C -0.133 4.133 13 C -0.124 4.124 14 C 0.131 3.869 15 H 0.071 0.929 16 C 0.152 3.848 17 N -0.732 5.732 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.043 4.043 21 N -0.942 5.942 22 Si 1.075 2.925 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.299 1.299 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.165 0.835 30 H 0.177 0.823 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.978 7.847 7.649 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.163 4.163 4 N -0.150 5.150 5 H 0.248 0.752 6 C -0.114 4.114 7 C -0.217 4.217 8 C 0.380 3.620 9 O -0.355 6.355 10 N -0.354 5.354 11 C -0.029 4.029 12 C -0.171 4.171 13 C -0.162 4.162 14 C 0.028 3.972 15 H 0.089 0.911 16 C 0.023 3.977 17 N -0.384 5.384 18 C -0.462 4.462 19 H 0.070 0.930 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.908 3.092 23 H -0.212 1.212 24 H -0.228 1.228 25 H -0.227 1.227 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.183 0.817 30 H 0.193 0.807 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.224 0.776 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.945 8.087 6.614 19.063 hybrid contribution 2.043 0.119 0.755 2.181 sum 17.988 8.206 7.369 21.100 Atomic orbital electron populations 1.20261 0.89026 1.03563 1.01725 1.20647 0.95864 0.90251 1.03979 1.21522 0.82512 0.99031 1.13267 1.41449 1.08008 1.06637 1.58909 0.75189 1.22480 0.99071 0.83658 1.06189 1.20471 0.92468 0.93053 1.15690 1.17039 0.84888 0.83095 0.76999 1.90785 1.16308 1.81880 1.46491 1.48280 1.07478 1.06058 1.73552 1.22480 0.83099 0.98178 0.99136 1.22776 0.99829 0.94567 0.99921 1.22627 0.94902 0.97954 1.00764 1.21834 0.96327 0.79830 0.99252 0.91083 1.20914 0.88275 0.96319 0.92169 1.42730 1.06683 1.79202 1.09767 1.19930 0.96663 1.41773 0.87847 0.92956 1.25535 0.93838 0.99945 1.04896 1.70690 1.38832 1.48915 1.00312 0.83329 0.76175 0.75357 0.74358 1.21226 1.22815 1.22715 0.92175 0.92694 0.88932 0.81744 0.80659 0.90670 0.91968 0.90756 0.90241 0.90253 0.90447 0.96748 0.96452 0.77557 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 10.03 36.01 0.36 -1.23 16 2 C -0.10 -1.72 6.35 -102.54 -0.65 -2.37 16 3 C -0.04 -0.46 11.82 -16.82 -0.20 -0.66 16 4 N -0.56 -5.75 5.90 -12.85 -0.08 -5.83 16 5 H 0.41 2.51 8.96 -40.82 -0.37 2.15 16 6 C 0.02 0.26 10.24 -16.85 -0.17 0.09 16 7 C -0.21 -3.65 6.22 -103.35 -0.64 -4.29 16 8 C 0.59 12.45 7.55 -12.59 -0.10 12.36 16 9 O -0.48 -12.59 11.74 5.26 0.06 -12.53 16 10 N -0.62 -10.79 3.07 -164.34 -0.50 -11.29 16 11 C 0.09 1.11 5.11 -2.53 -0.01 1.10 16 12 C -0.13 -1.31 7.09 -24.58 -0.17 -1.48 16 13 C -0.12 -1.55 6.44 -24.90 -0.16 -1.71 16 14 C 0.13 2.37 3.03 -66.96 -0.20 2.17 16 15 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 16 C 0.15 3.49 5.61 -4.05 -0.02 3.47 16 17 N -0.73 -21.08 4.39 -59.91 -0.26 -21.35 16 18 C -0.33 -10.46 9.99 -15.06 -0.15 -10.61 16 19 H 0.05 1.63 7.83 -52.49 -0.41 1.22 16 20 C -0.04 -1.39 5.50 -17.43 -0.10 -1.49 16 21 N -0.94 -32.10 13.70 55.49 0.76 -31.34 16 22 Si 1.08 28.51 29.92 -169.99 -5.09 23.42 16 23 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.13 6.76 -51.92 -0.35 1.78 16 29 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.18 1.68 4.81 -52.48 -0.25 1.42 16 31 H 0.08 0.75 5.99 -51.93 -0.31 0.44 16 32 H 0.06 0.67 7.74 -51.93 -0.40 0.27 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 11.63 3.89 -40.82 -0.16 11.47 16 40 H 0.27 9.20 6.64 -40.82 -0.27 8.93 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -40.21 318.60 -8.05 -48.26 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.53 Total: 10.51 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.22 Total: -4.66 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.08 Total: -69.80 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.06 Total: -12.53 kcal Atomic # 14 Polarization: 28.51 SS G_CDS: -5.09 Total: 23.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -40.21 -8.05 -48.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270303300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.708 kcal (2) G-P(sol) polarization free energy of solvation -40.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds