Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34490 * 126.82856 * 2 1 4 4 N 1.36448 * 108.85005 * 180.25047 * 3 2 1 5 5 H 0.97001 * 124.84602 * 179.77072 * 4 3 2 6 6 C 1.34651 * 110.30037 * 359.75129 * 4 3 2 7 7 C 1.36772 * 108.40115 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.94784 * 179.97438 * 7 6 4 9 9 O 1.21621 * 120.00037 * 186.50295 * 8 7 6 10 10 N 1.34778 * 119.99661 * 6.50316 * 8 7 6 11 11 C 1.47426 * 125.65061 * 6.17007 * 10 8 7 12 12 C 1.54908 * 104.83367 * 155.91702 * 11 10 8 13 13 C 1.55161 * 101.58006 * 37.00679 * 12 11 10 14 14 C 1.47023 * 125.64696 * 186.22248 * 10 8 7 15 15 H 1.09002 * 110.00733 * 300.50033 * 14 10 8 16 16 C 1.52990 * 109.88247 * 61.59365 * 14 10 8 17 17 N 1.46501 * 109.47520 * 284.35612 * 16 14 10 18 18 C 1.36939 * 120.00173 * 172.38097 * 17 16 14 19 19 H 1.07996 * 119.99994 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99851 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00149 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47291 * 300.00590 * 22 20 18 25 25 H 1.48510 * 109.46880 * 60.00370 * 22 20 18 26 26 H 1.08994 * 109.47626 * 270.14709 * 1 2 3 27 27 H 1.08999 * 109.47230 * 30.15200 * 1 2 3 28 28 H 1.09008 * 109.47058 * 150.14753 * 1 2 3 29 29 H 1.07996 * 125.57251 * 359.96554 * 3 2 1 30 30 H 1.08003 * 125.80257 * 179.97438 * 6 4 3 31 31 H 1.08997 * 110.36796 * 37.07391 * 11 10 8 32 32 H 1.09006 * 110.45909 * 274.80336 * 11 10 8 33 33 H 1.08997 * 111.00366 * 278.93242 * 12 11 10 34 34 H 1.09004 * 111.03523 * 155.09308 * 12 11 10 35 35 H 1.09004 * 110.71625 * 206.13238 * 13 12 11 36 36 H 1.09000 * 110.71960 * 82.86676 * 13 12 11 37 37 H 1.09001 * 109.47202 * 164.35643 * 16 14 10 38 38 H 1.09001 * 109.47285 * 44.35842 * 16 14 10 39 39 H 0.96993 * 119.99825 * 352.38496 * 17 16 14 40 40 H 0.97002 * 119.99533 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6553 -0.0056 5 1 4.3839 1.2415 -0.0100 6 6 3.6656 -0.6901 -0.0039 7 6 2.3864 -1.1740 0.0036 8 6 1.9750 -2.5880 0.0074 9 8 0.7996 -2.8796 -0.1051 10 7 2.9010 -3.5589 0.1357 11 6 4.3346 -3.3484 0.4073 12 6 4.8126 -4.6693 1.0603 13 6 3.9924 -5.7225 0.2692 14 6 2.6488 -5.0032 0.0268 15 1 1.9219 -5.3126 0.7778 16 6 2.1254 -5.3360 -1.3717 17 7 0.7235 -4.9245 -1.4793 18 6 0.0850 -4.9784 -2.6895 19 1 0.6149 -5.3239 -3.5648 20 6 -1.2432 -4.5879 -2.7915 21 7 -1.8887 -4.1653 -1.7251 22 14 -2.1140 -4.6608 -4.4425 23 1 -3.5150 -4.1943 -4.2842 24 1 -1.4077 -3.7874 -5.4137 25 1 -2.1120 -6.0594 -4.9419 26 1 -0.3634 0.0026 1.0276 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5116 29 1 1.9867 2.1059 -0.0005 30 1 4.5664 -1.2859 -0.0077 31 1 4.4720 -2.5139 1.0948 32 1 4.8757 -3.1668 -0.5214 33 1 4.5612 -4.6943 2.1206 34 1 5.8825 -4.8148 0.9110 35 1 3.8456 -6.6236 0.8648 36 1 4.4794 -5.9593 -0.6768 37 1 2.2029 -6.4098 -1.5427 38 1 2.7180 -4.8057 -2.1172 39 1 0.2476 -4.6137 -0.6933 40 1 -1.4363 -4.1271 -0.8678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270303300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = 13.900289 kcal Electronic energy + Delta-G solvation = -22480.400182 eV Core-core repulsion = 19295.677353 eV Total energy + Delta-G solvation = -3184.722829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15579 -40.67594 -38.17841 -36.52766 -33.50208 -33.32252 -32.69004 -30.67060 -29.78263 -27.52054 -26.49058 -25.08400 -24.19602 -22.39121 -21.84016 -20.66000 -19.67221 -19.17771 -18.51048 -17.58770 -17.46216 -16.45082 -15.78506 -15.61445 -15.22412 -15.17631 -14.94093 -14.69926 -14.43671 -14.13676 -13.90790 -13.79395 -13.62365 -13.35011 -13.25533 -12.89623 -12.57933 -12.54203 -12.28637 -12.15436 -11.88698 -11.85584 -11.60756 -11.14531 -10.87894 -10.54372 -9.65219 -9.37555 -9.17322 -8.89062 -8.28591 -5.16373 0.89028 1.49474 1.50358 1.64525 1.80709 2.12327 2.49629 2.70267 2.75151 3.49923 3.57869 3.67339 3.94042 3.95979 4.09328 4.20337 4.28732 4.32349 4.34644 4.50871 4.57169 4.66844 4.73370 4.78231 4.82781 4.87285 4.93583 4.96770 5.11304 5.13083 5.14088 5.34152 5.37564 5.57117 5.65495 5.85158 5.97575 6.63915 6.74733 6.80313 7.25858 7.62107 8.26532 8.37730 9.24657 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.007374 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.492308 B = 3796.036362 C = 5369.935953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.158 4.158 3 C -0.003 4.003 4 N -0.529 5.529 5 H 0.440 0.560 6 C 0.057 3.943 7 C -0.262 4.262 8 C 0.572 3.428 9 O -0.556 6.556 10 N -0.618 5.618 11 C 0.083 3.917 12 C -0.116 4.116 13 C -0.114 4.114 14 C 0.131 3.869 15 H 0.040 0.960 16 C 0.150 3.850 17 N -0.748 5.748 18 C -0.340 4.340 19 H 0.053 0.947 20 C -0.109 4.109 21 N -0.969 5.969 22 Si 1.130 2.870 23 H -0.290 1.290 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.204 0.796 30 H 0.214 0.786 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.021 0.979 38 H 0.008 0.992 39 H 0.374 0.626 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.333 9.215 7.445 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.165 4.165 3 C -0.132 4.132 4 N -0.125 5.125 5 H 0.281 0.719 6 C -0.080 4.080 7 C -0.273 4.273 8 C 0.364 3.636 9 O -0.433 6.433 10 N -0.353 5.353 11 C -0.038 4.038 12 C -0.154 4.154 13 C -0.153 4.153 14 C 0.027 3.973 15 H 0.058 0.942 16 C 0.022 3.978 17 N -0.399 5.399 18 C -0.472 4.472 19 H 0.071 0.929 20 C -0.300 4.300 21 N -0.616 5.616 22 Si 0.955 3.045 23 H -0.216 1.216 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.221 0.779 30 H 0.230 0.770 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.212 0.788 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.449 9.458 6.430 23.430 hybrid contribution 0.807 -0.275 0.851 1.204 sum 21.255 9.183 7.282 24.272 Atomic orbital electron populations 1.20019 0.91205 1.01288 1.00965 1.20756 0.95360 0.92199 1.08140 1.21876 0.82519 0.99343 1.09443 1.41467 1.08379 1.06263 1.56429 0.71866 1.22791 0.98107 0.84612 1.02517 1.20451 0.95107 0.91492 1.20202 1.17834 0.84580 0.85162 0.76016 1.90745 1.19366 1.83132 1.50090 1.48390 1.09723 1.05027 1.72184 1.22919 0.79492 1.00476 1.00927 1.22807 1.01584 0.91595 0.99427 1.22625 0.91657 0.98745 1.02225 1.21791 0.98942 0.81560 0.95036 0.94225 1.21127 0.85413 0.96002 0.95266 1.43000 1.09035 1.79279 1.08568 1.20342 0.97190 1.40682 0.88970 0.92863 1.27260 0.95361 0.99633 1.07771 1.70814 1.39077 1.51385 1.00371 0.82646 0.74738 0.76862 0.70301 1.21603 1.21003 1.19966 0.92418 0.90506 0.95336 0.77901 0.76988 0.88290 0.89986 0.90239 0.85976 0.88710 0.89413 0.96186 0.97411 0.78757 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.04 10.03 71.24 0.71 -2.33 16 2 C -0.16 -5.48 6.35 -18.51 -0.12 -5.60 16 3 C 0.00 -0.07 11.82 83.12 0.98 0.91 16 4 N -0.53 -8.53 5.90 -194.56 -1.15 -9.67 16 5 H 0.44 2.68 8.96 -92.71 -0.83 1.85 16 6 C 0.06 1.25 10.24 83.92 0.86 2.11 16 7 C -0.26 -9.36 6.22 -19.04 -0.12 -9.48 16 8 C 0.57 25.61 7.55 86.62 0.65 26.27 16 9 O -0.56 -32.09 11.74 -4.10 -0.05 -32.13 16 10 N -0.62 -21.86 3.07 -792.09 -2.43 -24.29 16 11 C 0.08 1.67 5.11 86.85 0.44 2.11 16 12 C -0.12 -1.78 7.09 31.99 0.23 -1.55 16 13 C -0.11 -2.59 6.44 31.78 0.20 -2.38 16 14 C 0.13 4.88 3.03 45.34 0.14 5.02 16 15 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 16 C 0.15 7.16 5.61 86.38 0.48 7.64 16 17 N -0.75 -45.97 4.39 -343.47 -1.51 -47.48 16 18 C -0.34 -22.53 9.99 84.03 0.84 -21.69 16 19 H 0.05 3.42 7.83 -2.91 -0.02 3.40 16 20 C -0.11 -7.28 5.50 84.86 0.47 -6.81 16 21 N -0.97 -70.24 13.70 21.65 0.30 -69.95 16 22 Si 1.13 59.17 29.92 68.60 2.05 61.23 16 23 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 24 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.03 1.46 6.76 -2.38 -0.02 1.44 16 29 H 0.20 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.21 2.92 4.81 -2.91 -0.01 2.91 16 31 H 0.10 1.53 5.99 -2.39 -0.01 1.52 16 32 H 0.08 1.37 7.74 -2.38 -0.02 1.36 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 37 H 0.02 0.94 8.09 -2.39 -0.02 0.92 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.37 24.68 3.89 -92.71 -0.36 24.32 16 40 H 0.25 18.56 6.64 -92.71 -0.62 17.95 16 Total: -1.00 -100.28 318.60 3.02 -97.26 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.03 Total: 30.83 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.78 Total: -5.80 kcal Atomic # 7 Polarization: -146.59 SS G_CDS: -4.79 Total: -151.38 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.05 Total: -32.13 kcal Atomic # 14 Polarization: 59.17 SS G_CDS: 2.05 Total: 61.23 kcal Total: -100.28 3.02 -97.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270303300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.157 kcal (2) G-P(sol) polarization free energy of solvation -100.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds