Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38176 * 120.49981 * 2 1 4 4 N 1.31796 * 120.89738 * 179.97438 * 3 2 1 5 5 C 1.31829 * 122.04704 * 359.97438 * 4 3 2 6 6 C 1.38131 * 120.89816 * 0.02794 * 5 4 3 7 7 C 1.39792 * 120.49956 * 180.02562 * 2 1 3 8 8 C 1.48147 * 120.92786 * 0.04278 * 7 2 1 9 9 O 1.21520 * 119.99506 * 311.67192 * 8 7 2 10 10 N 1.34773 * 120.00664 * 131.67114 * 8 7 2 11 11 C 1.46501 * 119.99491 * 4.68946 * 10 8 7 12 12 C 1.46495 * 120.00588 * 184.69169 * 10 8 7 13 13 H 1.09005 * 109.46500 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.47417 * 240.00138 * 12 10 8 15 15 C 1.52997 * 109.47337 * 119.99588 * 12 10 8 16 16 N 1.46498 * 109.47242 * 305.00417 * 15 12 10 17 17 C 1.36941 * 120.00326 * 180.02562 * 16 15 12 18 18 H 1.08003 * 119.99782 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00346 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99985 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47104 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47175 * 119.99752 * 21 19 17 24 24 H 1.48500 * 109.47198 * 239.99990 * 21 19 17 25 25 H 1.08998 * 109.46908 * 274.32253 * 1 2 3 26 26 H 1.09000 * 109.47150 * 34.32813 * 1 2 3 27 27 H 1.09002 * 109.47092 * 154.32316 * 1 2 3 28 28 H 1.08003 * 119.54755 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.54836 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.49349 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47383 * 84.96762 * 11 10 8 32 32 H 1.09001 * 109.47201 * 204.96762 * 11 10 8 33 33 H 1.09001 * 109.47159 * 324.96252 * 11 10 8 34 34 H 1.09003 * 109.46995 * 59.99125 * 14 12 10 35 35 H 1.08998 * 109.46887 * 179.97438 * 14 12 10 36 36 H 1.08998 * 109.46678 * 299.99605 * 14 12 10 37 37 H 1.08995 * 109.46951 * 65.00357 * 15 12 10 38 38 H 1.09003 * 109.46942 * 185.00418 * 15 12 10 39 39 H 0.97002 * 120.00165 * 359.97438 * 16 15 12 40 40 H 0.97006 * 120.00540 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1997 0.0005 5 6 4.2335 0.0872 0.0015 6 6 3.6137 -1.1473 0.0015 7 6 2.2165 -1.2045 -0.0005 8 6 1.5080 -2.5055 -0.0021 9 8 0.6024 -2.7050 0.7833 10 7 1.8676 -3.4678 -0.8744 11 6 3.0243 -3.2669 -1.7507 12 6 1.1019 -4.7147 -0.9465 13 1 0.2854 -4.6818 -0.2251 14 6 2.0193 -5.8960 -0.6242 15 6 0.5312 -4.8820 -2.3561 16 7 -0.2508 -3.6949 -2.7104 17 6 -0.8622 -3.6175 -3.9333 18 1 -0.7675 -4.4315 -4.6368 19 6 -1.6027 -2.4926 -4.2692 20 7 -1.7177 -1.5004 -3.4122 21 14 -2.4360 -2.3868 -5.9377 22 1 -2.1555 -3.6236 -6.7104 23 1 -3.9022 -2.2426 -5.7505 24 1 -1.9135 -1.2105 -6.6783 25 1 -0.3633 0.0775 1.0247 26 1 -0.3633 0.8487 -0.5795 27 1 -0.3633 -0.9262 -0.4453 28 1 1.6691 2.1263 0.0004 29 1 5.3121 0.1418 0.0015 30 1 4.1996 -2.0546 0.0020 31 1 3.9343 -3.5510 -1.2221 32 1 2.9153 -3.8829 -2.6433 33 1 3.0840 -2.2173 -2.0387 34 1 2.4259 -5.7767 0.3801 35 1 1.4494 -6.8236 -0.6774 36 1 2.8360 -5.9290 -1.3453 37 1 1.3485 -5.0040 -3.0669 38 1 -0.1109 -5.7623 -2.3860 39 1 -0.3362 -2.9639 -2.0785 40 1 -2.2349 -0.7140 -3.6470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270957564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = 16.705310 kcal Electronic energy + Delta-G solvation = -22353.947788 eV Core-core repulsion = 19169.346594 eV Total energy + Delta-G solvation = -3184.601194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68084 -39.06698 -36.45882 -34.14401 -33.33157 -32.53347 -31.18606 -30.02016 -27.20991 -26.76044 -25.68804 -24.50849 -22.73766 -22.19379 -20.93930 -19.08467 -17.52426 -17.11567 -16.66830 -16.12191 -15.35847 -15.04037 -14.81457 -14.50762 -14.01704 -13.65198 -13.44164 -13.31111 -13.16533 -12.96933 -12.44122 -12.38435 -12.29806 -12.17165 -11.92990 -11.70703 -11.48977 -11.34111 -10.88690 -10.79534 -10.51770 -10.04869 -10.01441 -9.73580 -9.59457 -9.19001 -8.90044 -8.80123 -8.34932 -6.92903 -5.76675 -3.05465 1.00548 1.17986 2.90690 3.24117 3.41723 3.47394 3.49503 3.88529 4.46759 4.52116 4.59233 4.86533 4.97440 5.10068 5.18569 5.32825 5.37393 5.47814 5.51793 5.57588 5.63255 5.75700 5.83230 5.88452 5.97212 6.02104 6.05463 6.09793 6.14135 6.31149 6.37150 6.45707 6.63117 6.67191 6.83348 6.91789 7.60721 7.68643 7.98102 8.38253 8.41144 9.52893 10.10068 10.45683 11.45522 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.006763 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.981412 B = 4139.318971 C = 5272.646366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C 0.093 3.907 4 N -0.474 5.474 5 C 0.079 3.921 6 C -0.143 4.143 7 C -0.078 4.078 8 C 0.565 3.435 9 O -0.527 6.527 10 N -0.588 5.588 11 C 0.080 3.920 12 C 0.125 3.875 13 H 0.101 0.899 14 C -0.154 4.154 15 C 0.143 3.857 16 N -0.728 5.728 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.927 5.927 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.139 0.861 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.030 0.970 39 H 0.385 0.615 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.295 -1.166 7.120 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.064 4.064 4 N -0.182 5.182 5 C -0.077 4.077 6 C -0.163 4.163 7 C -0.090 4.090 8 C 0.352 3.648 9 O -0.404 6.404 10 N -0.320 5.320 11 C -0.063 4.063 12 C 0.022 3.978 13 H 0.119 0.881 14 C -0.213 4.213 15 C 0.014 3.986 16 N -0.372 5.372 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.207 1.207 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.177 0.823 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.219 0.781 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.194 -0.551 7.356 14.251 hybrid contribution -0.844 -0.465 -0.948 1.352 sum 11.350 -1.016 6.408 13.073 Atomic orbital electron populations 1.20829 0.88561 1.05327 1.02392 1.21117 0.98620 0.92285 0.95415 1.22656 0.89635 0.97434 0.96716 1.67498 1.08350 1.31759 1.10600 1.22591 1.00187 0.87364 0.97592 1.22354 0.93726 1.00126 1.00120 1.20249 0.93929 0.94034 1.00744 1.18143 0.82721 0.83112 0.80790 1.90774 1.29884 1.80416 1.39303 1.47580 1.30348 1.16819 1.37223 1.21866 0.86848 1.03039 0.94595 1.21457 0.94243 0.82172 0.99915 0.88068 1.22053 0.99934 0.97874 1.01420 1.21021 0.94103 0.91886 0.91574 1.42285 1.59680 1.17613 1.17631 1.19235 1.24128 1.01455 0.92391 0.91257 1.24720 1.01072 0.96823 0.98151 1.69668 1.45273 1.07725 1.34836 0.86152 0.79180 0.77232 0.83798 1.20659 1.21882 1.21960 0.90713 0.90865 0.89212 0.82291 0.82603 0.84362 0.93106 0.90169 0.91178 0.92602 0.91279 0.92341 0.96099 0.95218 0.78127 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.24 36.01 0.33 -1.65 16 2 C -0.07 -1.18 5.93 -104.06 -0.62 -1.79 16 3 C 0.09 1.35 10.88 -17.59 -0.19 1.16 16 4 N -0.47 -6.80 10.34 -13.30 -0.14 -6.94 16 5 C 0.08 0.97 11.17 -17.59 -0.20 0.77 16 6 C -0.14 -1.83 7.89 -39.02 -0.31 -2.14 16 7 C -0.08 -1.28 4.93 -104.65 -0.52 -1.79 16 8 C 0.56 10.33 6.13 -12.19 -0.07 10.25 16 9 O -0.53 -11.17 15.01 5.35 0.08 -11.09 16 10 N -0.59 -9.68 2.24 -174.93 -0.39 -10.07 16 11 C 0.08 1.07 8.10 59.85 0.49 1.56 16 12 C 0.13 2.09 2.79 -67.93 -0.19 1.90 16 13 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 14 C -0.15 -1.91 9.19 37.16 0.34 -1.57 16 15 C 0.14 2.81 5.52 -4.04 -0.02 2.78 16 16 N -0.73 -18.33 5.43 -59.91 -0.33 -18.65 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 27 H 0.09 1.94 6.57 -51.93 -0.34 1.60 16 28 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.14 1.40 6.34 -52.49 -0.33 1.07 16 31 H 0.05 0.51 7.11 -51.93 -0.37 0.14 16 32 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 33 H 0.07 1.01 6.24 -51.93 -0.32 0.68 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 37 H 0.02 0.40 6.86 -51.93 -0.36 0.05 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.38 10.43 7.07 -40.82 -0.29 10.14 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -32.76 328.48 -6.94 -39.70 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.61 Total: 9.34 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.20 Total: 2.24 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.13 Total: -62.45 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.76 -6.94 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.404 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds