Wall clock time and date at job start Mon Mar 30 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38176 * 120.49981 * 2 1 4 4 N 1.31796 * 120.89738 * 179.97438 * 3 2 1 5 5 C 1.31829 * 122.04704 * 359.97438 * 4 3 2 6 6 C 1.38131 * 120.89816 * 0.02794 * 5 4 3 7 7 C 1.39792 * 120.49956 * 180.02562 * 2 1 3 8 8 C 1.48147 * 120.92786 * 0.04278 * 7 2 1 9 9 O 1.21520 * 119.99506 * 311.67192 * 8 7 2 10 10 N 1.34773 * 120.00664 * 131.67114 * 8 7 2 11 11 C 1.46501 * 119.99491 * 4.68946 * 10 8 7 12 12 C 1.46495 * 120.00588 * 184.69169 * 10 8 7 13 13 H 1.09005 * 109.46500 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.47417 * 240.00138 * 12 10 8 15 15 C 1.52997 * 109.47337 * 119.99588 * 12 10 8 16 16 N 1.46498 * 109.47242 * 305.00417 * 15 12 10 17 17 C 1.36941 * 120.00326 * 180.02562 * 16 15 12 18 18 H 1.08003 * 119.99782 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00346 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99985 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47104 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47175 * 119.99752 * 21 19 17 24 24 H 1.48500 * 109.47198 * 239.99990 * 21 19 17 25 25 H 1.08998 * 109.46908 * 274.32253 * 1 2 3 26 26 H 1.09000 * 109.47150 * 34.32813 * 1 2 3 27 27 H 1.09002 * 109.47092 * 154.32316 * 1 2 3 28 28 H 1.08003 * 119.54755 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.54836 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.49349 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47383 * 84.96762 * 11 10 8 32 32 H 1.09001 * 109.47201 * 204.96762 * 11 10 8 33 33 H 1.09001 * 109.47159 * 324.96252 * 11 10 8 34 34 H 1.09003 * 109.46995 * 59.99125 * 14 12 10 35 35 H 1.08998 * 109.46887 * 179.97438 * 14 12 10 36 36 H 1.08998 * 109.46678 * 299.99605 * 14 12 10 37 37 H 1.08995 * 109.46951 * 65.00357 * 15 12 10 38 38 H 1.09003 * 109.46942 * 185.00418 * 15 12 10 39 39 H 0.97002 * 120.00165 * 359.97438 * 16 15 12 40 40 H 0.97006 * 120.00540 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1997 0.0005 5 6 4.2335 0.0872 0.0015 6 6 3.6137 -1.1473 0.0015 7 6 2.2165 -1.2045 -0.0005 8 6 1.5080 -2.5055 -0.0021 9 8 0.6024 -2.7050 0.7833 10 7 1.8676 -3.4678 -0.8744 11 6 3.0243 -3.2669 -1.7507 12 6 1.1019 -4.7147 -0.9465 13 1 0.2854 -4.6818 -0.2251 14 6 2.0193 -5.8960 -0.6242 15 6 0.5312 -4.8820 -2.3561 16 7 -0.2508 -3.6949 -2.7104 17 6 -0.8622 -3.6175 -3.9333 18 1 -0.7675 -4.4315 -4.6368 19 6 -1.6027 -2.4926 -4.2692 20 7 -1.7177 -1.5004 -3.4122 21 14 -2.4360 -2.3868 -5.9377 22 1 -2.1555 -3.6236 -6.7104 23 1 -3.9022 -2.2426 -5.7505 24 1 -1.9135 -1.2105 -6.6783 25 1 -0.3633 0.0775 1.0247 26 1 -0.3633 0.8487 -0.5795 27 1 -0.3633 -0.9262 -0.4453 28 1 1.6691 2.1263 0.0004 29 1 5.3121 0.1418 0.0015 30 1 4.1996 -2.0546 0.0020 31 1 3.9343 -3.5510 -1.2221 32 1 2.9153 -3.8829 -2.6433 33 1 3.0840 -2.2173 -2.0387 34 1 2.4259 -5.7767 0.3801 35 1 1.4494 -6.8236 -0.6774 36 1 2.8360 -5.9290 -1.3453 37 1 1.3485 -5.0040 -3.0669 38 1 -0.1109 -5.7623 -2.3860 39 1 -0.3362 -2.9639 -2.0785 40 1 -2.2349 -0.7140 -3.6470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270957564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:07 Heat of formation + Delta-G solvation = -5.315539 kcal Electronic energy + Delta-G solvation = -22354.902683 eV Core-core repulsion = 19169.346594 eV Total energy + Delta-G solvation = -3185.556090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89364 -40.30763 -37.92564 -35.91828 -34.58554 -33.93431 -32.69014 -31.56624 -28.44690 -27.92821 -27.39312 -25.73994 -24.48398 -23.47016 -22.23552 -20.41976 -19.12466 -18.75762 -17.89644 -17.41930 -16.79596 -16.42781 -16.18400 -15.90574 -15.31270 -15.26492 -15.02753 -14.78254 -14.33723 -14.19009 -13.84855 -13.71303 -13.68110 -13.33216 -13.28343 -13.17134 -12.93868 -12.82852 -12.52054 -12.47508 -12.11008 -11.83438 -11.74823 -11.34795 -10.96859 -10.73889 -10.38129 -9.91829 -9.64699 -8.99190 -7.92672 -5.22359 -0.15633 0.10386 1.44933 1.45891 1.55390 1.55935 2.00802 2.54503 2.78445 3.30995 3.39828 3.51168 3.78833 3.82803 3.86217 4.00241 4.07460 4.21049 4.28078 4.39901 4.45015 4.57156 4.65742 4.68856 4.76788 4.79671 4.83606 4.85452 4.92001 4.97448 5.12154 5.13208 5.27557 5.33148 5.48497 5.59727 5.65180 6.26506 6.31654 6.91512 7.04101 7.33437 8.08499 8.32090 9.29628 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.006763 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.981412 B = 4139.318971 C = 5272.646366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.100 4.100 3 C 0.093 3.907 4 N -0.485 5.485 5 C 0.088 3.912 6 C -0.131 4.131 7 C -0.099 4.099 8 C 0.557 3.443 9 O -0.572 6.572 10 N -0.587 5.587 11 C 0.075 3.925 12 C 0.129 3.871 13 H 0.068 0.932 14 C -0.141 4.141 15 C 0.140 3.860 16 N -0.742 5.742 17 C -0.245 4.245 18 H 0.077 0.923 19 C -0.072 4.072 20 N -0.960 5.960 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.294 1.294 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.178 0.822 29 H 0.200 0.800 30 H 0.171 0.829 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.032 0.968 39 H 0.371 0.629 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.229 -1.984 6.480 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.102 4.102 3 C -0.064 4.064 4 N -0.194 5.194 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.110 4.110 8 C 0.345 3.655 9 O -0.452 6.452 10 N -0.318 5.318 11 C -0.066 4.066 12 C 0.026 3.974 13 H 0.087 0.913 14 C -0.199 4.199 15 C 0.013 3.987 16 N -0.385 5.385 17 C -0.377 4.377 18 H 0.095 0.905 19 C -0.265 4.265 20 N -0.610 5.610 21 Si 0.800 3.200 22 H -0.190 1.190 23 H -0.224 1.224 24 H -0.222 1.222 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.195 0.805 29 H 0.217 0.783 30 H 0.189 0.811 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.203 0.797 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.168 -1.419 6.688 16.638 hybrid contribution -1.689 -0.274 -0.742 1.865 sum 13.479 -1.693 5.946 14.829 Atomic orbital electron populations 1.20608 0.90235 1.02746 1.02291 1.21113 0.97760 0.93549 0.97827 1.22856 0.90031 0.97332 0.96171 1.67603 1.07980 1.32820 1.10970 1.23330 1.02013 0.86404 0.95041 1.22669 0.92067 1.01876 0.98425 1.20309 0.95648 0.92774 1.02282 1.18570 0.82326 0.83988 0.80584 1.90734 1.31863 1.81257 1.41348 1.47706 1.30771 1.16327 1.36949 1.22096 0.87315 1.02568 0.94670 1.21362 0.94731 0.84298 0.97051 0.91331 1.21967 0.99587 0.95904 1.02481 1.21235 0.93935 0.89766 0.93770 1.42505 1.60349 1.18884 1.16717 1.19628 1.23471 1.01312 0.93250 0.90534 1.25534 1.02466 0.96886 1.01650 1.69848 1.46351 1.08180 1.36625 0.85120 0.77488 0.77482 0.79902 1.18995 1.22445 1.22161 0.90223 0.90427 0.94062 0.80540 0.78307 0.81138 0.88517 0.90366 0.92176 0.91683 0.90040 0.90172 0.94353 0.94997 0.79738 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.81 9.24 71.24 0.66 -3.15 16 2 C -0.10 -3.36 5.93 -19.50 -0.12 -3.48 16 3 C 0.09 2.64 10.88 84.68 0.92 3.56 16 4 N -0.49 -12.86 10.34 -196.00 -2.03 -14.88 16 5 C 0.09 1.86 11.17 84.67 0.95 2.81 16 6 C -0.13 -2.98 7.89 22.63 0.18 -2.81 16 7 C -0.10 -3.21 4.93 -19.88 -0.10 -3.31 16 8 C 0.56 20.86 6.13 86.88 0.53 21.39 16 9 O -0.57 -25.75 15.01 -3.78 -0.06 -25.81 16 10 N -0.59 -19.00 2.24 -825.66 -1.85 -20.85 16 11 C 0.08 1.84 8.10 127.77 1.04 2.88 16 12 C 0.13 4.27 2.79 44.99 0.13 4.39 16 13 H 0.07 2.73 6.91 -2.38 -0.02 2.71 16 14 C -0.14 -3.12 9.19 71.98 0.66 -2.45 16 15 C 0.14 5.44 5.52 86.38 0.48 5.92 16 16 N -0.74 -38.16 5.43 -343.46 -1.87 -40.02 16 17 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.96 -59.04 13.06 21.65 0.28 -58.76 16 21 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 27 H 0.04 1.94 6.57 -2.39 -0.02 1.92 16 28 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.17 2.68 6.34 -2.91 -0.02 2.66 16 31 H 0.10 1.49 7.11 -2.39 -0.02 1.47 16 32 H 0.08 1.95 6.53 -2.39 -0.02 1.93 16 33 H 0.06 1.61 6.24 -2.39 -0.01 1.60 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.44 7.67 -2.39 -0.02 1.43 16 37 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.37 21.06 7.07 -92.71 -0.65 20.41 16 40 H 0.25 14.87 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -74.61 328.48 3.53 -71.08 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.40 Total: 31.52 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.63 Total: 9.19 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -5.46 Total: -134.51 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.06 Total: -25.81 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.61 3.53 -71.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.763 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds